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Roles of Metallic Ions in Prion Diseases : Structure and Properties of Copper-binding Sites in Prion Protein

Research Project

Project/Area Number 20750008
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeSingle-year Grants
Research Field Physical chemistry
Research InstitutionGifu University

Principal Investigator

YAMAMOTO Norifumi  Gifu University, 情報科学研究科, 特任助教 (30452163)

Project Period (FY) 2008 – 2010
Project Status Completed (Fiscal Year 2010)
Budget Amount *help
¥4,420,000 (Direct Cost: ¥3,400,000、Indirect Cost: ¥1,020,000)
Fiscal Year 2010: ¥780,000 (Direct Cost: ¥600,000、Indirect Cost: ¥180,000)
Fiscal Year 2009: ¥780,000 (Direct Cost: ¥600,000、Indirect Cost: ¥180,000)
Fiscal Year 2008: ¥2,860,000 (Direct Cost: ¥2,200,000、Indirect Cost: ¥660,000)
Keywords生物物理化学 / 量子化学 / 金属複合体 / プリオン病 / 酸化還元電位 / 酸化還元 / 金属イオン / プリオンタンパク / 量子化学計算 / 金属結合タンパク / アミロイド / 電子状態計算 / オクタリピート / 神経変性 / 酸化ストレス / 金属結合蛋白 / クプリゾン
Research Abstract

Prion protein (PrP) is a metalloprotein having several copper-binding regions in the N-terminal half domain. One is a highly conserved octapeptide repeat portion in PrP(60-91). Additional copper-binding sites are located around His96 and His111. In this study, to clarify copper's role in the pathological mechanism underlying prion diseases, we had investigated redox chemical behaviors of these copper-binding sites in PrP using the density functional theory calculations. The results indicated that the octarepeat sites had a high Cu(II)/Cu(I) reduction potential, which can exhibit SOD-like activity. The copper ion bound to the His96 and His111 sites, however, had a high Cu(II)/Cu(III) oxidation potential, which can modify the redox property to react with hydrogen peroxide to generate hydroxyl radicals via a Fenton-type pro-oxidative reaction. These distinct redox activities of PrP, individually or collectively, could be involved in the neurotoxic mechanism underlying prion diseases.

Report

(4 results)
  • 2010 Annual Research Report   Final Research Report ( PDF )
  • 2009 Annual Research Report
  • 2008 Annual Research Report
  • Research Products

    (23 results)

All 2010 2009 2008 Other

All Journal Article (10 results) (of which Peer Reviewed: 10 results) Presentation (12 results) Remarks (1 results)

  • [Journal Article] Partial energy gradient based on the fragment molecular orbital method: Application to geometry optimization2010

    • Author(s)
      石川岳志, 山本典史, 桑田一夫,
    • Journal Title

      Chemical Physics Letters 500巻

      Pages: 149-154

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Redox behaviors of the neurotoxic portion in human prion protein, HuPrP(106-126)2010

    • Author(s)
      山本典史, 桑田一夫
    • Journal Title

      Chemical Physics Letters 498巻

      Pages: 184-187

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Redox behaviors of the neurotoxic portion in human prion protein, HuPrP(106-126)2010

    • Author(s)
      Norifumi Yamamoto
    • Journal Title

      Chemical Physics Letters

      Volume: 498 Pages: 184-187

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Partial energy gradient based on the fragment molecular orbital method : Application to geometry optimization2010

    • Author(s)
      Takeshi Ishikawa
    • Journal Title

      Chemical Physics Letters

      Volume: 500 Pages: 149-154

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Difference in redox behaviors between copper binding octarepeat and nonoctarepeat sites in prion protein2009

    • Author(s)
      山本典史, 桑田一夫
    • Journal Title

      Journal of Biological Inorganic Chemistry 14巻

      Pages: 1209-1218

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Regulating the conformation of prion protein through ligand binding2009

    • Author(s)
      山本典史, 桑田一夫
    • Journal Title

      Journal of Physical Chemistry B 113巻

      Pages: 12853-12856

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] DFT studies on redox properties of copper chelating cuprizone: Unusually high valent copper(III) state2009

    • Author(s)
      山本典史, 桑田一夫
    • Journal Title

      Journal Molecular Structure Theochem 895巻

      Pages: 52-56

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Difference in redox behaviors between copper-binding octarepeat and nonoctarepeat sites in prion protein2009

    • Author(s)
      Norifumi Yamamoto
    • Journal Title

      Journal of Biological Inorganic Chemistry 14

      Pages: 1209-1218

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Regulating the conformation of prion protein through ligand binding2009

    • Author(s)
      Norifumi Yamamoto
    • Journal Title

      Journal of Physical Chemistry B 113

      Pages: 12853-12856

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] DFT studies on redox properties of copper-chelating cuprizone : Unusually high-valent copper(III) state2009

    • Author(s)
      Norifumi Yamamoto
    • Journal Title

      Journal of Molecular Structure : THEOCHEM 895

      Pages: 52-56

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Presentation] プリオンタンパク質変性状態の構造類比2010

    • Author(s)
      山本典史, 桑田一夫
    • Organizer
      第4回分子科学討論会
    • Place of Presentation
      大阪
    • Year and Date
      2010-09-14
    • Related Report
      2010 Final Research Report
  • [Presentation] プリオンタンパク質変性状態の構造類比2010

    • Author(s)
      山本典史
    • Organizer
      第4回分子科学討論会
    • Place of Presentation
      大阪大学豊中キャンパス
    • Year and Date
      2010-09-14
    • Related Report
      2010 Annual Research Report
  • [Presentation] A pharmacological chaperone preventing the partial unfolding of prion protein2010

    • Author(s)
      Norifumi Yamamoto
    • Organizer
      The 54th Annual Meeting of The Biophysical Society
    • Place of Presentation
      サンフランシスコ(米国)
    • Year and Date
      2010-02-23
    • Related Report
      2009 Annual Research Report
  • [Presentation] A pharmacological chaperone preventing the partial unfolding of prion protein2010

    • Author(s)
      山本典史, 桑田一夫
    • Organizer
      The 54th Annual Meeting of The Biophysical Society
    • Place of Presentation
      San Francisco
    • Year and Date
      2010-02-20
    • Related Report
      2010 Final Research Report
  • [Presentation] Anti prion compound GN8 acts as a chemical chaperon for prion protein2009

    • Author(s)
      山本典史, 桑田一夫
    • Organizer
      第47回日本生物物理学会年会
    • Place of Presentation
      徳島
    • Year and Date
      2009-10-30
    • Related Report
      2010 Final Research Report
  • [Presentation] Anti-prion compound GN8 acts as a chemical chaperon for prion protein2009

    • Author(s)
      Norifumi Yamamoto
    • Organizer
      The 47th Annual Meeting of the Biophysical Society of Japan
    • Place of Presentation
      徳島(日本)
    • Year and Date
      2009-10-30
    • Related Report
      2009 Annual Research Report
  • [Presentation] 抗プリオン化合物の作用機序:ケミカルシャペロンによるプリオンタンパクの構造制御2009

    • Author(s)
      山本典史
    • Organizer
      第3回分子科学討論会
    • Place of Presentation
      名古屋(日本)
    • Year and Date
      2009-09-22
    • Related Report
      2009 Annual Research Report
  • [Presentation] 抗プリオン化合物の作用機序:ケミカルシャペロンによるプリオンタンパクの構造制御2009

    • Author(s)
      山本典史, 桑田一夫
    • Organizer
      第3回分子科学討論会
    • Place of Presentation
      名古屋
    • Year and Date
      2009-09-21
    • Related Report
      2010 Final Research Report
  • [Presentation] Regulating the conformation of prion protein through ligand binding2009

    • Author(s)
      Norifumi Yamamoto
    • Organizer
      The 23rd Annual Symposium of The Protein Society
    • Place of Presentation
      ボストン(米国)
    • Year and Date
      2009-07-26
    • Related Report
      2009 Annual Research Report
  • [Presentation] Regulating the conformation of prion protein through ligand binding2009

    • Author(s)
      山本典史, 桑田一夫
    • Organizer
      The 23rd Annual Symposium of The Protein Society
    • Place of Presentation
      Boston
    • Year and Date
      2009-07-25
    • Related Report
      2010 Final Research Report
  • [Presentation] プリオン病における毒性作用の発現機構 : 遷移金属イオンの生体作用を軸とした分子論的解析2008

    • Author(s)
      山本典史
    • Organizer
      第46回日本生物物理学会年会
    • Place of Presentation
      福岡
    • Year and Date
      2008-12-05
    • Related Report
      2008 Annual Research Report
  • [Presentation] DFT studies on physiochemical properties of prion derived copper binding peptides: Pivotal roles of metallic ions in prion diseases2008

    • Author(s)
      山本典史, 桑田一夫
    • Organizer
      第46回日本生物物理学会年会
    • Place of Presentation
      福岡
    • Year and Date
      2008-12-03
    • Related Report
      2010 Final Research Report
  • [Remarks]

    • URL

      http://researchmap.jp/yamnor

    • Related Report
      2010 Annual Research Report

URL: 

Published: 2008-04-01   Modified: 2016-04-21  

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