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Supramolecular structural analysis of the pore forming protein

Research Project

Project/Area Number 20780077
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeSingle-year Grants
Research Field Applied biochemistry
Research InstitutionNagasaki University

Principal Investigator

GODA Shuichiro  Nagasaki University, 工学部, 准教授 (00346587)

Project Period (FY) 2008 – 2009
Project Status Completed (Fiscal Year 2009)
Budget Amount *help
¥4,290,000 (Direct Cost: ¥3,300,000、Indirect Cost: ¥990,000)
Fiscal Year 2009: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Fiscal Year 2008: ¥2,600,000 (Direct Cost: ¥2,000,000、Indirect Cost: ¥600,000)
Keywordsタンパク質 / 構造変化 / レクチン / 溶血性 / X線小角散乱 / タシパク質
Research Abstract

To elucidate the pore forming oligomeric structure of the hemolytic lectin derived from sea invertebrate Cucumaria echinata, small-angle x-ray scattering and circular dicolorism(CD) were carried out. CEL-III forms 25-mer in artificial oligomerization solution, but it dissociate into hexamer in the presence of detergent. This suggests that the hexamer is minimum unit of hemolytic activity. Kratky plot showed that the tertiary structure of CEL-III was destroyed and spectra were similar to that of the random coil structure in the absence of Ca^(2+)or lacturose or both. Whereas, CD spectra showed that the secondary structure was almost same as monomeric CEL-III under the same condition. These results suggest that the tertiary structure of CEL-III under the oligomerization was almost destroyed, but still contains same secondary structure as monomeric CEL-III.

Report

(3 results)
  • 2009 Annual Research Report   Final Research Report ( PDF )
  • 2008 Annual Research Report
  • Research Products

    (24 results)

All 2009 2008 Other

All Journal Article (10 results) (of which Peer Reviewed: 9 results) Presentation (13 results) Remarks (1 results)

  • [Journal Article] 大腸菌で生産される超好熱菌由来の不活性型グルタミン酸脱水素酵素の活性化機構2009

    • Author(s)
      郷田秀一郎, 櫻庭春彦, 大島敏久
    • Journal Title

      生化学 81

      Pages: 1049-1055

    • NAID

      10026299785

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] characterization and crystal structure of (S)-malate dehydrogenase from the hyperthermophilic archaeon Aeropyrum pernix2009

    • Author(s)
      Kawakami R., Sakuraba H., Goda S., Tsuge H., Ohshima T. Refolding
    • Journal Title

      Biochimica et Biophysica Acta 1794

      Pages: 1496-1504

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Effects of Ca2+ on Refolding of the Recombinant Hemolytic Lectin CEL-III2009

    • Author(s)
      Hisamatsu K., Unno H., Goda S., Hatakeyama T.
    • Journal Title

      Biosci Biotechnol Biochem 73

      Pages: 1203-1205

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Roles of the Valine Clusters in Domain 3 of the Hemolytic Lectin CEL-III in Its Oligomerization and Hemolytic Abilities2009

    • Author(s)
      Hisamatsu K., Unno H., Goda S., Hatakeyama T.
    • Journal Title

      Protein and Peptide Letters 16

      Pages: 411-414

    • Related Report
      2009 Final Research Report
  • [Journal Article] Effects of Ca2+ on Refolding of the Recombinant Hemolytic Lectin CEL-III2009

    • Author(s)
      HISAMATSU K., UNNO H., GODA S., HATAKEYAMA T.
    • Journal Title

      Biosci Biotechnol Biochem 73

      Pages: 1203-1205

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Refolding, characterization and crystal structure of (S)-malate dehydrogenase from the hyperthermophilic archaeon Aeropyrum pernix2009

    • Author(s)
      Kawakami R., Sakuraba H., Goda S., Tsuge H., Ohshima T.
    • Journal Title

      Biochimica et Biophysica Acta 1794

      Pages: 1496-1504

    • NAID

      120007015445

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 大腸菌で生産される超好熱菌由来の不活性型グルタミン酸脱水素酵素の活性化機構2009

    • Author(s)
      郷田秀一郎、櫻庭春彦、大島敏久
    • Journal Title

      生化学 81

      Pages: 1049-1055

    • NAID

      10026299785

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 大腸菌体内で不活性型遺伝子組換え酵素として生産される好熱菌由来のグルタミン酸脱水素酵素の活性化とそれに伴う構造変化2008

    • Author(s)
      郷田秀一郎
    • Journal Title

      ビタミン 82

      Pages: 337-343

    • NAID

      110006792554

    • Related Report
      2009 Final Research Report 2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Roles of the Valine Clusters in Domain 3 of the Hemolytic Lectin CEL-III in Its OlizomerizatiOn and Hemolytic Abilities

    • Author(s)
      K. Hisamatsu
    • Journal Title

      Protein and Peptide Letters (印刷中)(掲載確定)

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Effects of Ca2+ on Refolding of the Recombinant Hemolytic Lectin CEL-III

    • Author(s)
      K. Hisamatsu
    • Journal Title

      Biosci Biotechnol Biochem (印刷中)(掲載確定)

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Presentation] 溶血性レクチンCEL-IIIの自己会合ドメイン中のアミノ酸残基の役2009

    • Author(s)
      久松啓伍 海野英昭 郷田秀一郎 畠山智充
    • Organizer
      日本蛋白質科学会年会
    • Place of Presentation
      熊本市
    • Year and Date
      2009-05-22
    • Related Report
      2009 Annual Research Report
  • [Presentation] Analysis of the oligomerization mechanism and structure of CEL-III by small-angle x-ray scattering2009

    • Author(s)
      Shuichiro Goda, Hitoshi Sadakata, Keigo Hisamatsu, Yuzuru Hiragi, Tomomitsu Hatakeyama
    • Organizer
      日本生物物理学会
    • Place of Presentation
      徳島市
    • Related Report
      2009 Annual Research Report 2009 Final Research Report
  • [Presentation] 海産無脊椎動物グミ由来溶血性レクチンCEL-IIIのX線小角散乱による多量体構造及び形成機構の解析2009

    • Author(s)
      郷田秀一郎貞方仁久松啓伍柊弓絃 畠山智充
    • Organizer
      日本蛋白質科学会年会
    • Place of Presentation
      熊本市
    • Related Report
      2009 Annual Research Report 2009 Final Research Report
  • [Presentation] 溶血性レクチンCEL-IIIの自己会合ドメイン中のアミノ酸残基の役割2009

    • Author(s)
      久松啓伍海野英昭郷田秀一郎畠山智充
    • Organizer
      日本蛋白質科学会年会
    • Place of Presentation
      熊本市
    • Related Report
      2009 Final Research Report
  • [Presentation] 溶血性レクチンの構造解析2009

    • Author(s)
      郷田秀一郎
    • Organizer
      第二回長崎プリオン研究会
    • Place of Presentation
      長崎市
    • Related Report
      2009 Final Research Report
  • [Presentation] 海産無脊椎動物グミ由来溶血性レクチンCEL-III会合体のX線小角散乱による構造解析2009

    • Author(s)
      郷田秀一郎貞方仁久松啓伍柊弓絃 畠山智充
    • Organizer
      日本農芸化学会大会
    • Place of Presentation
      福岡市
    • Related Report
      2009 Final Research Report
  • [Presentation] ANALYSIS OF THE OLIGOMERIZATION MECHANISM AND STRUCTURE OF THE HEMOLYTIC LECTIN CEL-III DERIVED FROM SEA CUCUMBER BY SMALL-ANGLE X-RAY SCATTERING Joint international open symposium2009

    • Author(s)
      Shuichiro Goda, Hitoshi Sadakata, Keigo Hisamatsu, Yuzuru Hiragi, Tomomitsu Hatakeyama
    • Organizer
      Molecular science of fluctuations toward biological functions and chemistry of biological processes created by water and biomolecules
    • Place of Presentation
      OKAZAKI
    • Related Report
      2009 Final Research Report
  • [Presentation] 海鼠(グミ)由来溶血性レクチンCEL-IIIの多量化機構のX線小角散乱による解析2008

    • Author(s)
      貞方仁
    • Organizer
      日本生物物理学会年会
    • Place of Presentation
      福岡国際会議場
    • Year and Date
      2008-12-04
    • Related Report
      2008 Annual Research Report
  • [Presentation] グミ由来CEL-III膜貫通型複合体のX線結晶構造解析2008

    • Author(s)
      松本尚樹
    • Organizer
      日本農芸化学会西日本支部大会
    • Place of Presentation
      長崎大学
    • Year and Date
      2008-09-20
    • Related Report
      2008 Annual Research Report
  • [Presentation] 溶血性レクチンCEL-III会合ドメインの部位特異的変異体作製とその性質2008

    • Author(s)
      久松啓伍
    • Organizer
      日本農芸化学会西日本支部大会
    • Place of Presentation
      長崎大学
    • Year and Date
      2008-09-20
    • Related Report
      2008 Annual Research Report
  • [Presentation] 海鼠(グミ)由来溶血性レクチンCEL-IIIの多量化機構のX線小角散乱による解析2008

    • Author(s)
      貞方仁、久松啓伍、柊弓絃、畠山智充、郷田秀一郎
    • Organizer
      日本生物物理学会
    • Place of Presentation
      福岡市
    • Related Report
      2009 Final Research Report
  • [Presentation] グミ由来CEL-III膜貫通型複合体のX線結晶構造解析2008

    • Author(s)
      松本尚樹、貞方仁、郷田秀一郎、海野英昭、畠山智充
    • Organizer
      日本農芸化学会西日本支部大会
    • Place of Presentation
      長崎市
    • Related Report
      2009 Final Research Report
  • [Presentation] 溶血性レクチンCEL-III会合ドメインの部位特異的変異体作製とその性質2008

    • Author(s)
      久松啓伍、海野英昭、郷田秀一郎、畠山智充
    • Organizer
      日本農芸化学会西日本支部大会
    • Place of Presentation
      長崎市
    • Related Report
      2009 Final Research Report
  • [Remarks]

    • URL

      http://www.ch.nagasaki-u.ac.jp/bio/

    • Related Report
      2009 Final Research Report

URL: 

Published: 2008-04-01   Modified: 2016-04-21  

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