• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to previous page

Analysis of the biosynthetic pathway and the regulatory mechanism of secondary metabolites in Streptomyces

Research Project

Project/Area Number 20780083
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeSingle-year Grants
Research Field Bioproduction chemistry/Bioorganic chemistry
Research InstitutionHiroshima University

Principal Investigator

ARAKAWA Kenji  Hiroshima University, 大学院・先端物質科学研究科, 助教 (80346527)

Project Period (FY) 2008 – 2009
Project Status Completed (Fiscal Year 2009)
Budget Amount *help
¥4,160,000 (Direct Cost: ¥3,200,000、Indirect Cost: ¥960,000)
Fiscal Year 2009: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
Fiscal Year 2008: ¥2,340,000 (Direct Cost: ¥1,800,000、Indirect Cost: ¥540,000)
Keywords生合成 / 抗生物質 / ポリケチド / 制御遺伝子 / 転写活性化因子 / 糖転移酵素 / アミンオキシダーゼ / 大員環 / ポリケチド合成酵素 / P450 / ガンマブチロラクトン
Research Abstract

We analyzed the function of the secondary metabolites genes located on the linear plasmid pSLA2-L. In LC biosynthesis, the C-18 amine group in an acyclic compound is oxidized by LkcE to form the iminium intermediate, which then receives the nucleophilic attack from C-2 enolate to form the 17-membered macrocyclic LC. We also determined the order of post-PKS modification in LM biosynthesis. The extensive transcriptional analysis has revealed that the γ-butyrolactone signaling cascade goes from srrX through srrA to srrY, leading to LC and LM production.

Report

(3 results)
  • 2009 Annual Research Report   Final Research Report ( PDF )
  • 2008 Annual Research Report
  • Research Products

    (39 results)

All 2010 2009 2008 Other

All Journal Article (11 results) (of which Peer Reviewed: 10 results) Presentation (25 results) Remarks (3 results)

  • [Journal Article] Regulation of lankamycin biosynthesis in Streptomyces rochei by two SARP genes, srrY and srrZ2010

    • Author(s)
      T. Suzuki, S. Mochizuki, S. Yamamoto, K. Arakawa, H. Kinashi
    • Journal Title

      Biosci. Biotechnol. Biochem 74(in press)

    • NAID

      10027554042

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] The structure of ribosome-lankacidin complex reveals ribosomal sites for synergistic antibiotics2010

    • Author(s)
      T. Auerbach, I. Mermershtain, C. Davidovich, A. Bashan, M. Belousoff, I. Wekselman, E. Zimmerman, L. Xiong, D. Klepacki, K. Arakawa, H. Kinashi, A. Mankin, A. Yonath
    • Journal Title

      Proc. Natl. Acad. Sci. USA 107

      Pages: 1983-1988

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] The structure of ribosome-lankacidin complex reveals ribosomal sites for synercistic antibiotics2010

    • Author(s)
      Tamar AUERBACH
    • Journal Title

      Proceedings of the National Academy of Sciences of the United States of America 107・5

      Pages: 1983-1988

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Regulation of lankamycin biosynthesis in Streptomyces rochei by two SARP genes, srrY and srrZ2010

    • Author(s)
      鈴木敏弘
    • Journal Title

      Bioscience, Biotechnology, and Biochemistry 74(in press)

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Extensive mutational analysis of modular-iterative mixed polyketide biosynthesis of lankacidin in Streptomyces rochei2009

    • Author(s)
      S. Tatsuno, K. Arakawa, H. Kinashi
    • Journal Title

      Biosci. Biotechnol. Biochem 73

      Pages: 2712-2719

    • NAID

      10027549212

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Extensive mutational analysis of modular-iterative mixed polyketide biosynthesis of lankacidin in Streptomvices rochei2009

    • Author(s)
      立野智資
    • Journal Title

      Bioscience, Biotechnology, and Biochemistry 73・12

      Pages: 2712-2719

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Gene disruption analysis of two glycosylation steps in lankamycin biosynthesis in Streptomyces rochei2008

    • Author(s)
      K. Arakawa, T. Suzuki, H. Kinashi
    • Journal Title

      Actinomycetol 22

      Pages: 35-41

    • NAID

      10024656843

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] γ-Butyrolactone-dependent expression of the SARP gene srrY plays a central role in the regulatory cascade leading to lankacidin and lankamycin production in Streptomyces rochei2008

    • Author(s)
      S. Yamamoto, Y. He, K. Arakawa, H. Kinashi
    • Journal Title

      J. Bacteriol 190

      Pages: 1308-1316

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] γ-Butyrolactone-dependent expression of the SARP gene srrY plays a central role in the regulatory cascade leading to lankacidin and lankamycin production in Streptomyces rochei2008

    • Author(s)
      山本章治
    • Journal Title

      Journal of Bacteriology 190-4

      Pages: 1308-1316

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Gene disruption analysis of two glycosylation steps in lankamycin biosynthesis in Streptomyces rochei2008

    • Author(s)
      荒川賢治
    • Journal Title

      Actinomycetologica 22-2

      Pages: 35-41

    • NAID

      10024656843

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 線状プラスミド上の抗生物質生合成クラスターの解析とその応用2008

    • Author(s)
      荒川賢治
    • Journal Title

      バイオサイエンスとインダストリー 66-9

      Pages: 504-508

    • NAID

      10024745648

    • Related Report
      2008 Annual Research Report
  • [Presentation] Studies on the genes essential for a linear topology of Streptomyces replicons2010

    • Author(s)
      Yosi NINDITA
    • Organizer
      日本農芸化学会2010年度大会
    • Place of Presentation
      東京大学(東京都文京区)
    • Year and Date
      2010-03-30
    • Related Report
      2009 Annual Research Report
  • [Presentation] Streptomyces rocheiの線状プラスミドpSLA2-Mの全塩基配列決定2010

    • Author(s)
      楊英悉
    • Organizer
      日本農芸化学会2010年度大会
    • Place of Presentation
      東京大学(東京都文京区)
    • Year and Date
      2010-03-30
    • Related Report
      2009 Annual Research Report
  • [Presentation] 放線菌Streptomyces rochei 7434AN4株の抗生物質生合成制御カスケードにおけるリプレッサーSrrB, SrrCの機能及び代謝産物解析2010

    • Author(s)
      高橋譲
    • Organizer
      日本農芸化学会2010年度大会
    • Place of Presentation
      東京大学(東京都文京区)
    • Year and Date
      2010-03-28
    • Related Report
      2009 Annual Research Report
  • [Presentation] Biosynthetic study of the 17-membered polyketide antibiotic lankacidin2009

    • Author(s)
      荒川賢治
    • Organizer
      The 25th Naito Conference "Chemical Biology [ll]"
    • Place of Presentation
      北海道札幌市
    • Year and Date
      2009-09-10
    • Related Report
      2009 Annual Research Report
  • [Presentation] Biosynthesis of the 17-membered polyketide antibiotic lankacidin(国際会議招待講演)2009

    • Author(s)
      荒川賢治
    • Organizer
      International Symposium of Chemical Biology
    • Place of Presentation
      中華人民共和国・厦門市
    • Year and Date
      2009-08-27
    • Related Report
      2009 Annual Research Report
  • [Presentation] Analysis of the regulatory cascade of antibiotic production in Streptomyces rochei 7434AN42009

    • Author(s)
      鈴木敏弘
    • Organizer
      15th International Symposium on the Biology of Actinomyicetes
    • Place of Presentation
      中華人民共和国・上海市
    • Year and Date
      2009-08-23
    • Related Report
      2009 Annual Research Report
  • [Presentation] Complete nucleotide sequence of linear plasmid pSLA2-M in Streptomyces rochei2009

    • Author(s)
      楊英悉
    • Organizer
      15th International Symposium on the Biology of Actinomycetes
    • Place of Presentation
      中華人民共和国・上海市
    • Year and Date
      2009-08-23
    • Related Report
      2009 Annual Research Report
  • [Presentation] Isolation, characterization and biological activity of borrelidin produced by a potato pathogenic Streptomyces strain2009

    • Author(s)
      曹志生
    • Organizer
      15th International Symposium on the Biology of Actinomycetes
    • Place of Presentation
      中華人民共和国・厦門市
    • Year and Date
      2009-08-22
    • Related Report
      2009 Annual Research Report
  • [Presentation] Mutational analysis of the modular-iterative mixed polyketide biosynthesis of lankacidin2009

    • Author(s)
      荒川賢治
    • Organizer
      15th International Symposium on the Biology of Actinomyicetes
    • Place of Presentation
      中華人民共和国・上海市
    • Year and Date
      2009-08-21
    • Related Report
      2009 Annual Research Report
  • [Presentation] Streptomyces rocheiにおける二次代謝制御カスケードの解析2009

    • Author(s)
      鈴木敏弘
    • Organizer
      2009年度日本放線菌学会大会
    • Place of Presentation
      秋田県秋田市
    • Year and Date
      2009-07-17
    • Related Report
      2009 Annual Research Report
  • [Presentation] 放線菌線状プラスミドにコードされた生合成遺伝子群の機能解析2009

    • Author(s)
      荒川賢治
    • Organizer
      2009年度日本放線菌学会大会
    • Place of Presentation
      秋田県秋田市
    • Year and Date
      2009-07-16
    • Related Report
      2009 Final Research Report
  • [Presentation] 放線菌線状プラスミドにコードされた生合成遺伝子群の機能解析(浜田賞 受賞講演)2009

    • Author(s)
      荒川賢治
    • Organizer
      2009年度日本放線菌学会大会
    • Place of Presentation
      秋田県秋田市
    • Year and Date
      2009-07-16
    • Related Report
      2009 Annual Research Report
  • [Presentation] Streptomyces rocheiの線状プラスミドpSLA2-Mの全塩基配列決定2009

    • Author(s)
      楊英恋
    • Organizer
      2009年度日本放線菌学会大会
    • Place of Presentation
      秋田県秋田市
    • Year and Date
      2009-07-16
    • Related Report
      2009 Annual Research Report
  • [Presentation] Streptomyces rocheiのPQQ生合成遺伝子破壊株の代謝産物解析2009

    • Author(s)
      吉田竜平
    • Organizer
      2009年度日本放線菌学会大会
    • Place of Presentation
      秋田県秋田市
    • Year and Date
      2009-07-16
    • Related Report
      2009 Annual Research Report
  • [Presentation] 放線菌Strptomyces rocheiにおける抗生物質生合成制御力スケードSrrX→SrrA→SrrYに対するリプレッサーSrrB, SrrCの関与2009

    • Author(s)
      高橋譲
    • Organizer
      日本農芸化学会2009年度大会
    • Place of Presentation
      福岡県福岡市
    • Year and Date
      2009-03-28
    • Related Report
      2008 Annual Research Report
  • [Presentation] Type-ll型チオエステラーゼlkmE破壊株より得られた新規ランカマイシン誘導体の化学構造と生合成起源2009

    • Author(s)
      荒川賢治
    • Organizer
      日本農芸化学会2009年度大会
    • Place of Presentation
      福岡県福岡市
    • Year and Date
      2009-03-28
    • Related Report
      2008 Annual Research Report
  • [Presentation] 放線菌より単離したジャガイモそうか病の新規病原因子の化学構造および生物活性2009

    • Author(s)
      曹志生
    • Organizer
      日本農芸化学会2009年度大会
    • Place of Presentation
      福岡県福岡市
    • Year and Date
      2009-03-28
    • Related Report
      2008 Annual Research Report
  • [Presentation] Regulation of lankacidin and lankamycin biosynthesis in Streptomyces rochei2008

    • Author(s)
      荒川賢治
    • Organizer
      Japan-UK Workshop on Genomics of Antibiotic-producing Actinomycetes: Implications and Applications
    • Place of Presentation
      日本大学・東京
    • Year and Date
      2008-10-31
    • Related Report
      2009 Final Research Report
  • [Presentation] Regulation of lankacidin and lankamycin biosynthesis in Streptomyces rochei2008

    • Author(s)
      荒川賢治
    • Organizer
      Japan-UK Workshop on Genomics of Antibiotic-producing Actinomycetes : Implications and Applications
    • Place of Presentation
      日本大学・東京
    • Year and Date
      2008-10-31
    • Related Report
      2008 Annual Research Report
  • [Presentation] 17員環ポリケチド抗生物質ランカサイジンの生合成機構2008

    • Author(s)
      荒川賢治
    • Organizer
      2008年度日本放線菌学会大会
    • Place of Presentation
      山梨県山梨市
    • Year and Date
      2008-07-11
    • Related Report
      2008 Annual Research Report
  • [Presentation] Streptomyces coelicolor変異株における染色体環状化の解析2008

    • Author(s)
      西川友也
    • Organizer
      2008年度日本放線菌学会大会
    • Place of Presentation
      山梨県山梨市
    • Year and Date
      2008-07-10
    • Related Report
      2008 Annual Research Report
  • [Presentation] Streptomyces rocheiの胞子形成制御に関与するTetR型リプレッサーの機能解析2008

    • Author(s)
      鈴木敏弘
    • Organizer
      2008年度日本放線菌学会大会
    • Place of Presentation
      山梨県山梨市
    • Year and Date
      2008-07-10
    • Related Report
      2008 Annual Research Report
  • [Presentation] Type-II型チオエステラーゼLkmEの機能解析2008

    • Author(s)
      荒川賢治
    • Organizer
      2008年度日本放線菌学会大会
    • Place of Presentation
      山梨県山梨市
    • Year and Date
      2008-07-10
    • Related Report
      2008 Annual Research Report
  • [Presentation] A modular-iterative mixed polyketide synthases and oxidative macrocyclization in the biosynthesis of the 17-membered antibiotic lankacidin2008

    • Author(s)
      荒川賢治
    • Organizer
      7th-Japan-US seminar
    • Place of Presentation
      米国San Diego
    • Year and Date
      2008-05-31
    • Related Report
      2009 Final Research Report
  • [Presentation] A modular-iterative mixed polyketide synthases and oxidative macrocyclization in the biosynthesis of the 17-membered antibiotic lankacidin2008

    • Author(s)
      荒川賢治
    • Organizer
      7th-Japan-US seminar
    • Place of Presentation
      San Diego, USA
    • Year and Date
      2008-05-31
    • Related Report
      2008 Annual Research Report
  • [Remarks]

    • URL

      http://home.hiroshima-u.ac.jp/mbiotech/hosenkin_lab/hosen_lab.html

    • Related Report
      2009 Final Research Report
  • [Remarks] 研究室のホームページ

    • URL

      http://home.hiroshima-u.ac.jp/mbiotech/hosenkin_lab/hosen_lab.html

    • Related Report
      2009 Annual Research Report
  • [Remarks] 研究室のホームページ

    • URL

      http://home.hiroshima-u.ac.jp/mbiotech/hosenkin_lab/hosen_lab.html

    • Related Report
      2008 Annual Research Report

URL: 

Published: 2008-04-01   Modified: 2016-04-21  

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi