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Structural basis for the cleavage of VWF by ADAMTS-13 under shear forces

Research Project

Project/Area Number 20790030
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeSingle-year Grants
Research Field Physical pharmacy
Research InstitutionThe University of Tokyo

Principal Investigator

NISHIDA Noritaka  The University of Tokyo, 大学院・薬学系研究科, 助教 (50456183)

Project Period (FY) 2008 – 2009
Project Status Completed (Fiscal Year 2009)
Budget Amount *help
¥4,290,000 (Direct Cost: ¥3,300,000、Indirect Cost: ¥990,000)
Fiscal Year 2009: ¥2,080,000 (Direct Cost: ¥1,600,000、Indirect Cost: ¥480,000)
Fiscal Year 2008: ¥2,210,000 (Direct Cost: ¥1,700,000、Indirect Cost: ¥510,000)
Keywords構造生物学 / NMR / 血小板凝集 / VWF / ADAMTS-13
Research Abstract

Von Willebrand factor (VWF) mediates platelet adhesion under high shear stress. The activity of VWF is controlled by the ADAMTS13, which cuts the VWF in the force dependent manner. However, the structural basis as to how VWF exposes the cryptic site in the A2 domain for ADAMTS13 is unknown. In this study, I made a recombinant VWF A2 domain, using Pichia Pastorsis. Backbone resonance assignment of A2 domain was established for >80% signals. Based on the chemical shift change induced by low concentration of urea, the a3 and a5 helices and a4less loop, which is proximal to the scissile bond, undergoes a conformational change that would exposes the cleavage site for ADAMTS13.

Report

(3 results)
  • 2009 Annual Research Report   Final Research Report ( PDF )
  • 2008 Annual Research Report
  • Research Products

    (16 results)

All 2010 2009 2008

All Journal Article (14 results) (of which Peer Reviewed: 6 results) Presentation (2 results)

  • [Journal Article] Shimada I "Two-state conformations in the hyarulonan-binding domain regulate CD44 adhesiveness under flow condition"2010

    • Author(s)
      Ogino S, Nishida N, Umemoto R, Suzuki M, Takeda M, Terasawa H, Kitayama J, Matsumoto M, Hayasaka H, Miyasaka M, Shimada I
    • Journal Title

      Structure 18

      Pages: 649-56

    • Related Report
      2009 Final Research Report
  • [Journal Article] Springer TA "Structure of an integrin with anαI domain, complement receptor type 4"2010

    • Author(s)
      Xie C, Zhu J, Chen X, Mi LZ, Nishida N, Springer TA
    • Journal Title

      EMBO J 29

      Pages: 666-79

    • Related Report
      2009 Final Research Report
  • [Journal Article] Structure of an integrin with an αl domain, complement receptor type 42010

    • Author(s)
      Can Xie
    • Journal Title

      The EMBO Journal 29

      Pages: 666-79

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Two-state conformations in the hyaluronan-binding domain regulate CD44 adhesiveness under flow condition2010

    • Author(s)
      Shinji Ogino
    • Journal Title

      Structure (in press)

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Shimada I "Observation of NMR signals from proteins introduced into living mammalian cells by reversible membrane permeabilization using a pore-forming toxin, Streptolysin O"2009

    • Author(s)
      Ogino S, Kubo S, Umemoto R, Huang S, Nishida N, Shimada I
    • Journal Title

      J Am Chem Soc 131

      Pages: 10834-5

    • Related Report
      2009 Final Research Report
  • [Journal Article] Cross-saturation and transferred cross-saturation experiments.2009

    • Author(s)
      Shimada I, Ueda T, Matsumoto M, Sakakura M, Osawa M, Takeuchi K, Nishida N, Takahashi H.
    • Journal Title

      Prog. Nuc. Magn. Reson. Spect. 54

      Pages: 123-140

    • Related Report
      2009 Final Research Report
  • [Journal Article] Observation of NMR signals from proteins introduced into living mammalian cells by reversible membrane permeabilization using a pore-forming toxin, Streptolysin O2009

    • Author(s)
      Shinji Ogino
    • Journal Title

      Journal of American Chemical Society 131

      Pages: 10834-35

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Cross-saturation and transferred cross-saturation experiments2009

    • Author(s)
      Ichio Shimada
    • Journal Title

      Prog. Nuc. Magn. Reson. Spect. 54

      Pages: 123-140

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Structure of a complete integrin ectodomain in a physiologic resting state and activation and deactivation by applied forces2008

    • Author(s)
      Zhu J, Luo BH, Xiao T, Zhang C, Nishida N, Springer TA.
    • Journal Title

      Mol Cell 32

      Pages: 849-61

    • Related Report
      2009 Final Research Report
  • [Journal Article] Functional and structural stability of the epidermal growth factor receptor in detergent micelles and phospholipid nanodiscs2008

    • Author(s)
      Mi LZ, Grey MJ, Nishida N, Walz T, Lu C, Springer TA.
    • Journal Title

      Biochemistry 47

      Pages: 10314-23

    • Related Report
      2009 Final Research Report
  • [Journal Article] コラーゲン結合タンパク質を介した生命プロセスの活性化機構2008

    • Author(s)
      西田紀貴・嶋田一夫
    • Journal Title

      生化学 80

      Pages: 483-92

    • NAID

      10021192049

    • Related Report
      2009 Final Research Report
  • [Journal Article] 不溶性の細胞外マトリックスとの相互作用を解明する新しいNMR測定法2008

    • Author(s)
      西田紀貴・嶋田一夫
    • Journal Title

      生体の科学 59

      Pages: 358-59

    • Related Report
      2009 Final Research Report
  • [Journal Article] Structure of a complete integrin ectodomain in a physiologic resting state and activation and deactivation by applied forces2008

    • Author(s)
      Jianhai Zhu
    • Journal Title

      Molecular Cell 32

      Pages: 849-861

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Functional and structural stability of the epidermal growth factor receptor in detergent micelles and phospholipid nanodiscs2008

    • Author(s)
      LiZhi Mi
    • Journal Title

      Biochemistry 47

      Pages: 10314-23

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Presentation] Structural mechanism for the affinity regulation of cytoplasmic Dynein2009

    • Author(s)
      宝田理
    • Organizer
      Dynein2009
    • Place of Presentation
      神戸ポートアイランド
    • Year and Date
      2009-11-02
    • Related Report
      2009 Annual Research Report
  • [Presentation] Structural Mechanism for the Affinity Regulation of Cytoplasmic Dynein2009

    • Author(s)
      宝田理、西田紀貴、久保智史、吉川雅英、嶋田一夫
    • Organizer
      International Workshop Dynein 2009
    • Place of Presentation
      神戸
    • Related Report
      2009 Final Research Report

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Published: 2008-04-01   Modified: 2016-04-21  

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