• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to previous page

Structural study of D-Ala-D-Ala ligase to develop new antibiotics

Research Project

Project/Area Number 20790035
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeSingle-year Grants
Research Field Physical pharmacy
Research InstitutionHiroshima University

Principal Investigator

MATOBA Yasuyuki  Hiroshima University, 大学院・医歯薬学総合研究科, 准教授 (90363051)

Project Period (FY) 2008 – 2009
Project Status Completed (Fiscal Year 2009)
Budget Amount *help
¥3,900,000 (Direct Cost: ¥3,000,000、Indirect Cost: ¥900,000)
Fiscal Year 2009: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
Fiscal Year 2008: ¥2,080,000 (Direct Cost: ¥1,600,000、Indirect Cost: ¥480,000)
Keywords構造生物 / 抗生物質 / 酵素 / ドラッグデザイン / 構造生物学
Research Abstract

The aim of this study is to clarify the structural basis of D-cycloserine (DCS) resistance of DCS-resistant D-Ala-D-Ala ligase. From the amino acid sequence analysis, it was found that Tyr residue in the substrate-binding pocket, which is conserved among DCS-sensitive D-Ala-D-Ala ligases, is replaced by Phe residue in the DCS-resistant D-Ala-D-Ala ligase. In this study, it was proved that the Phe residue contributes to the DCS-resistance.

Report

(3 results)
  • 2009 Annual Research Report   Final Research Report ( PDF )
  • 2008 Annual Research Report
  • Research Products

    (19 results)

All 2010 2009 2008

All Journal Article (9 results) (of which Peer Reviewed: 9 results) Presentation (10 results)

  • [Journal Article] Molecular cloning and heterologous expression of a biosynthetic gene cluster for an anti-tubercular agent D-cycloserine produced by Streptomyces lavendulae2010

    • Author(s)
      Kumagai T, Koyama Y, Oda K, Noda M, Matoba Y, Sugiyama M
    • Journal Title

      Antimicrobiol. Agents Chemother 54

      Pages: 1132-1139

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Catalytic mechanism of bleomycin-N-acetyltransferase proposed on the base of its crystal structure2010

    • Author(s)
      Oda K, Matoba Y, Noda M, Kumagai T, Sugiyama M
    • Journal Title

      J. Biol. Chem 285

      Pages: 1446-1456

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Catalytic mechanism of bleomycin N-acetyltransferase proposed on the basis of its crystal structure2010

    • Author(s)
      Oda K, et al.
    • Journal Title

      Journal of Biological Chemistry 285

      Pages: 1446-1456

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Molecular cloning and heterologous expression of a biosynthetic gene cluster for the antitubercular agent D-cycloserine produced by Streptomyces lavendulae2010

    • Author(s)
      Kumagai T, et al.
    • Journal Title

      Antimicrobial Agents and Chemotherapy 54

      Pages: 1132-1139

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A novel tyrosine- phosphorylated protein inhibiting the growth of Streptomyces cells2009

    • Author(s)
      Kumagai T, Kihara H, Watanabe W, Noda M, Matoba Y, Sugiyama M
    • Journal Title

      Biochem. Biophys. Res. Commun 385

      Pages: 534-538

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] A novel tyrosine-phosphorylated protein inhibiting the growth of Streptomyces cells2009

    • Author(s)
      Kumagai T, et al.
    • Journal Title

      Biochemical and Biophysical Research Communications 385

      Pages: 534-538

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Crystal structure and mutagenic analysis of a bacteriocin immunity protein, Mun-im2009

    • Author(s)
      Jeon HJ, et.al.
    • Journal Title

      Biochemical and Biophysical Research Communications 378

      Pages: 574-578

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Crystal structure of SCCA1 and insight about the interaction with JNK12009

    • Author(s)
      Zheng B, et.al.
    • Journal Title

      Biochemical and Biophysical Research Communications 380

      Pages: 143-147

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Molecular cloning and functional analysis of minD gene from Streptomyces lavendulae ATCC 252332008

    • Author(s)
      Nguyen TH, et.al.
    • Journal Title

      Journal of Bioscience and Bioengineering 106

      Pages: 303-305

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Presentation] D-サイクロセリン生合成遺伝子クラスターのクローニングと機能解析2010

    • Author(s)
      小山佑介, 熊谷孝則, 野田正文, 的場康幸, 杉山政則
    • Organizer
      日本薬学会第130年会
    • Place of Presentation
      岡山
    • Related Report
      2009 Final Research Report
  • [Presentation] D-サイクロセリン生合成に関与する4種類のタンパク質DcsB, DcsC, DcsDおよびDcsGの機能解析2010

    • Author(s)
      宇田成利, 的場康幸, 小田康祐, 野田正文, 熊谷孝則, 杉山政則
    • Organizer
      日本薬学会第130年会
    • Place of Presentation
      岡山
    • Related Report
      2009 Final Research Report
  • [Presentation] D-サイクロセリン生合成に関与する酵素セリンO-アセチルトランスフェラーゼの構造生物学的研究2010

    • Author(s)
      小田康祐, 的場康幸, 野田正文, 熊谷孝則, 杉山政則
    • Organizer
      日本薬学会第130年会
    • Place of Presentation
      岡山
    • Related Report
      2009 Final Research Report
  • [Presentation] 放線菌Streptomyces coelicolorに存在するチロシンリン酸化タンパク質の同定と機能解析2010

    • Author(s)
      熊谷孝則, 木原春日, 渡邉稚子, 野田正文, 的場康幸, 杉山政則
    • Organizer
      日本薬学会第130年会
    • Place of Presentation
      岡山
    • Related Report
      2009 Final Research Report
  • [Presentation] D-サイクロセリン生合成に関与するセリンO-アセチルトランスフェラーゼの構造解析2009

    • Author(s)
      小田康祐, 的場康幸, 野田正文, 熊谷孝則, 杉山政則
    • Organizer
      第61回日本生物工学会大会
    • Place of Presentation
      名古屋
    • Related Report
      2009 Final Research Report
  • [Presentation] D-サイクロセリン生合成遺伝子クラスターを構成する遺伝子の構造と機能の解析2009

    • Author(s)
      小山正文, 杉山政則
    • Organizer
      2009年度日本放線菌学会大会
    • Place of Presentation
      秋田
    • Related Report
      2009 Final Research Report
  • [Presentation] Streptomyces verticillusの自己耐性因子ブレオマイシンN-アセチル化酵素の反応機構と基質阻害機構の解明2008

    • Author(s)
      小田康祐, 的場康幸, 野田正文, 熊孝則, 杉山政則
    • Organizer
      2008年度日本放線菌学会大会
    • Place of Presentation
      山梨
    • Related Report
      2009 Final Research Report
  • [Presentation] Streptomyces lavendulae ATCC11924からのD-サイクロセリン耐性遺伝子周辺領域のクローニングとその機能解析2008

    • Author(s)
      小山佑介, 熊谷孝則正文, 杉山政則
    • Organizer
      2008年度日本放線菌学会大会
    • Place of Presentation
      山梨
    • Related Report
      2009 Final Research Report
  • [Presentation] 構造学的知見に基づいたブレオマイシンN-アセチルトランスフェラーゼの反応機構の解明2008

    • Author(s)
      小田康祐, 的場康幸, 野田孝則, 杉山政則
    • Organizer
      平成20年度日本蛋白質科学会
    • Place of Presentation
      東京
    • Related Report
      2009 Final Research Report
  • [Presentation] ピューロマイシンハイドロラーゼのX線結晶構造解析2008

    • Author(s)
      中山亮, 則, 西村基弘, 杉山政則
    • Organizer
      平成20年度日本蛋白質科学会
    • Place of Presentation
      東京
    • Related Report
      2009 Final Research Report

URL: 

Published: 2008-04-01   Modified: 2016-04-21  

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi