• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to previous page

Prediction of metabolic dynamics in human erythrocytes based on a large-scale mathematical model and its verification by metabolome analysis

Research Project

Project/Area Number 20790237
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeSingle-year Grants
Research Field General medical chemistry
Research InstitutionKeio University

Principal Investigator

YACHIE Ayako  Keio University, 医学部, 助教 (10453549)

Project Period (FY) 2008 – 2009
Project Status Completed (Fiscal Year 2009)
Budget Amount *help
¥3,640,000 (Direct Cost: ¥2,800,000、Indirect Cost: ¥840,000)
Fiscal Year 2009: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2008: ¥2,340,000 (Direct Cost: ¥1,800,000、Indirect Cost: ¥540,000)
Keywordsシステム生物学 / シミュレーション / 血液保存 / メタボローム / 代謝解析 / 代謝シミュレーション / 細胞シミュレーション / 赤血球 / 保存血液 / アデノシン / 低酸素応答
Research Abstract

Large-scale mathematical model of metabolism in human red blood cells predicted that high extracellular adenosine resulted in decrease in intracellular ATP levels, and that the reduction of cellular energy would be compensated by glycolytic activation through hypoxia-induced hemoglobin-transition. A simulation model that can reproduce the metabolic behavior in long and cold stored red blood cells in MAP solution was also developed. The MAP-stored model would contribute to high-throughput and low-cost screening of optimized stored condition.

Report

(3 results)
  • 2009 Annual Research Report   Final Research Report ( PDF )
  • 2008 Annual Research Report
  • Research Products

    (31 results)

All 2010 2009 2008 Other

All Journal Article (10 results) (of which Peer Reviewed: 8 results) Presentation (18 results) Book (1 results) Remarks (2 results)

  • [Journal Article] A Metabolic Model of Human Erythrocytes: Practical Application of the E-Cell Simulation Environment2010

    • Author(s)
      Yachie-Kinoshita, A., Nishino, T., Shimo, H., Suematsu, M., Tomita, M.
    • Journal Title

      J Biomed Biotechnol (in press)

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Paradoxical ATP elevation in ischemic penumbra revealed by quantitative imaging mass spectrometry Antioxid2010

    • Author(s)
      Hattori, K., Kajimura, M., Hishiki, T., Nakanishi, T., Kubo, A., Nagahata, Y., Ohmura, M., Yachie-Kinoshita, A., Matsuura, T., Morikawa, T., Nakamura, T., Setou, M., Suematsu, M.
    • Journal Title

      Redox Signal (in press)

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Hypotaurine is an energy-saving hepatoprotective compound against ischemia-reperfusion injury of the rat liver2010

    • Author(s)
      Sakuragawa, T., Hishiki, T., Ueno, Y., Ikeda, S., Soga, T., Yachie-Kinoshita, A., Kajimura, M., Suematsu, M.
    • Journal Title

      J. Clin. Biochem. Nutr. 46(2)

      Pages: 126-134

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] T-state stabilization of hemoglobin by nitric oxide to form a-nitrosyl heme causes constitutive release of ATP from human erythrocytes2010

    • Author(s)
      Akatsu, T., Tsukada, K., Hishiki, T., Suganuma, K., Tanabe, M., Shimazu, M., Kitagawa, Y., Yachie-Kinoshita, A., Suematsu, M.
    • Journal Title

      Advances in Experimental Medicine and Biology 662

      Pages: 109-114

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] Hypotaurine is an energy-saving hepatoprotective compound against ischemia-reperfusion injury of the rat liver.2010

    • Author(s)
      Sakuragawa, T., Hishiki, T., Ueno, Y., Ikeda, S., Soga, T., Yachie-Kinoshita, A.,Kajimura, M.,Suematsu, M
    • Journal Title

      J Clin Biochem Nutr. 46(2)

      Pages: 126-134

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] T-state stabilization of hemoglobin by nitric oxide to form alpha-nitrosyl heme causes constitutive release of ATP from human erythrocytes.2010

    • Author(s)
      Akatsu T, Tsukada K, Hishiki T, Suga-Numa K, Tanabe M, Shimazu M,Kitagawa Y,Yachie-Kinoshita A, Suematsu M.
    • Journal Title

      Adv Exp Med Biol. 66

      Pages: 109-114

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] In silico modeling and metabolome analysis of long-stored erythrocytes to improve blood storage methods2009

    • Author(s)
      Nishino, T., Yachie-Kinoshita, A. * (* corresponding authour), Hirayama, A., Soga, T., Suematsu, M., Tomita, M.
    • Journal Title

      J Biotechnol 144(3)

      Pages: 212-223

    • Related Report
      2009 Final Research Report
    • Peer Reviewed
  • [Journal Article] E-Cell systemによるヒト赤血球代謝シミュレーションの展開2009

    • Author(s)
      西野泰子谷内江綾子冨田勝
    • Journal Title

      人工血液 17(1)

      Pages: 37-43

    • Related Report
      2009 Final Research Report
  • [Journal Article] In silico modeling and metabolome analysis of long-stored erythrocytes to improve blood storage methods.2009

    • Author(s)
      Nishino T, Yachie-Kinoshita A, Hirayama A, Soga T, Suematsu M, Tomita M.
    • Journal Title

      J Biotechnol 114(3)

      Pages: 212-223

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] E-Cell systemによるヒト赤血球代謝シミュレーションの展開2009

    • Author(s)
      西野泰子, 谷内江綾子, 冨田勝
    • Journal Title

      人工血液 17(1)(掲載決定済、未刊行)

    • Related Report
      2008 Annual Research Report
  • [Presentation] Development of hepatic lobular model of metabolism based on large-scale biosimulation at individual cellular level2010

    • Author(s)
      Yahcie-Kinoshita A, Kawahara H., Suematsu M.
    • Organizer
      2nd Bio-SuperComputing Symposium 2009
    • Place of Presentation
      東京
    • Related Report
      2009 Final Research Report
  • [Presentation] Development of hepatic lobular model of metabolism based on large-scale biosimulation at individual cellular level2010

    • Author(s)
      Yahcie-Kinoshita A, Kawahara H., Suematsu M.
    • Organizer
      The 2^<nd> Biosupercomputing Symposium
    • Place of Presentation
      MY PLASAホール(東京)
    • Related Report
      2009 Annual Research Report
  • [Presentation] シミュレーションとメタボローム解析による新規血液保存法の開発2009

    • Author(s)
      西野泰子, 谷内江綾子, 平山明由, 曽我朋義, 末松誠, 冨田勝
    • Organizer
      第32回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜
    • Related Report
      2009 Annual Research Report
  • [Presentation] 新規血液保存法の開発に向けた保存赤血球シミュレーションとメタボローム解析」2009

    • Author(s)
      西野泰子, 谷内江綾子, 平山明由, 曽我朋義, 末松誠, 冨田勝
    • Organizer
      第4回メタボロームシンポジウム
    • Place of Presentation
      横浜市立横浜サイエンスフロンティア高等学校
    • Related Report
      2009 Annual Research Report
  • [Presentation] 赤血球代謝シミュレーションとメタボローム解析による新規血液保存法の開発2009

    • Author(s)
      西野泰子, 谷内江綾子, 平山明由, 曽我朋義, 末松誠, 冨田勝
    • Organizer
      第82回日本生化学会大会
    • Place of Presentation
      神戸ポートアイランド
    • Related Report
      2009 Annual Research Report
  • [Presentation] Mathematical modeling of preserved red blood cells towards improvement of blood storage2009

    • Author(s)
      Nishino, T., Yachie-Kinoshita, A., Hirayama, A., Soga, T., Suematsu, M. Tomita, M
    • Organizer
      The 10^<th> International Conference on Systems Biology
    • Place of Presentation
      Stanford, CA, USA
    • Related Report
      2009 Annual Research Report
  • [Presentation] 網羅的代謝解析により強化された肝細胞代謝モデルの開発と応用2008

    • Author(s)
      谷内江綾子, 藤木夏子, 福田亮, 末松誠
    • Organizer
      バイオスーパーコンピューティングシンポジウム2008
    • Place of Presentation
      東京
    • Year and Date
      2008-12-25
    • Related Report
      2008 Annual Research Report
  • [Presentation] 赤血球代謝モデルの応用と4D細胞シミュレーションへの拡張2008

    • Author(s)
      谷内江綾子, 川原仁志, 西野泰子, 須永泰弘, 野田茂穂, 大日向大地, 横田秀夫,末松誠
    • Organizer
      バイオスーパーコンピューティングシンポジウム2008
    • Place of Presentation
      東京
    • Year and Date
      2008-12-25
    • Related Report
      2008 Annual Research Report
  • [Presentation] 細胞における代謝の時空間シミュレーション2008

    • Author(s)
      谷内江綾子川原仁志野田茂穂須 永泰弘大日向大地横田秀夫末松誠
    • Organizer
      BMB2008第31回日本分子生物学会年会・第81回日本生化学会大会合同大会
    • Place of Presentation
      神戸
    • Year and Date
      2008-12-11
    • Related Report
      2009 Final Research Report
  • [Presentation] 細胞における代謝の時空間シミュレーション2008

    • Author(s)
      谷内江綾子, 川原仁志, 野田茂穂, 須永泰弘, 大日向大地, 横田秀夫, 末松誠
    • Organizer
      BMB2008第31回日本分子生物学会年会・第81回日本生化学会大会合同大会
    • Place of Presentation
      神戸市
    • Year and Date
      2008-12-11
    • Related Report
      2008 Annual Research Report
  • [Presentation] ヒト赤血球代謝シミュレーションとメタボローム技術によるMAP保存赤血球代謝の予測と解析2008

    • Author(s)
      西野泰子, 谷内江綾子, 末松誠, 冨田勝
    • Organizer
      BMB2008 第31回日本分子生物学会年会・第81回日本生化学会大会合同大会
    • Place of Presentation
      神戸市
    • Year and Date
      2008-12-11
    • Related Report
      2008 Annual Research Report
  • [Presentation] ヒト赤血球低温保存モデルのシミュレーション解析とメタボローム測定による検証2008

    • Author(s)
      西野泰子, 谷内江綾子, 平山明由, 曽我朋義, 末松誠, 冨田勝
    • Organizer
      第3回メタボロームシンポジウム
    • Place of Presentation
      鶴岡市
    • Year and Date
      2008-10-31
    • Related Report
      2008 Annual Research Report
  • [Presentation] Simulation and metabolome analysis of human red blood cells during storage in MAP medium at 4℃2008

    • Author(s)
      Taiko Nishino, Ayako Yachie-Kinoshita, Makoto Suematsu and Masaru Tomita
    • Organizer
      The 9th International Conference on Systems Biology
    • Place of Presentation
      Gothenburg, Sweden
    • Year and Date
      2008-08-24
    • Related Report
      2008 Annual Research Report
  • [Presentation] Simulation on Temporospatial Dynamics of Cellular Metabolism2008

    • Author(s)
      Ayako Yachie-Kinoshita, Shigeho Noda, Shin Yoshizawa, Hideo Yokota and Makoto Suematsu
    • Organizer
      1st Joint Workshop on Computational Science
    • Place of Presentation
      和光市
    • Year and Date
      2008-07-08
    • Related Report
      2008 Annual Research Report
  • [Presentation] 赤血球代謝モデルの応用と4D細胞シミュレーションへの拡張2008

    • Author(s)
      谷内江綾子川原仁志西野泰子須 永泰弘野田茂穂大日向大地横田秀夫末松誠
    • Organizer
      Bio-SuperComputing Symposium
    • Place of Presentation
      東京
    • Related Report
      2009 Final Research Report
  • [Presentation] 網羅的代謝解析により強化された肝細胞代謝モデルの開発と応用2008

    • Author(s)
      谷内江綾子藤木夏子福田亮末松誠
    • Organizer
      Bio-SuperComputing Symposium
    • Place of Presentation
      東京
    • Related Report
      2009 Final Research Report
  • [Presentation] 細胞シミュレーションとメタボローム解析による実証2008

    • Author(s)
      谷内江綾子
    • Organizer
      第291回CBI学会研究講演会
    • Place of Presentation
      東京
    • Related Report
      2009 Final Research Report 2008 Annual Research Report
  • [Presentation] 1st Joint Workshop on Computational Science2008

    • Author(s)
      Yachie-Kinoshita, A., Noda, S., Yoshizawa, S., Yokota, H., Suematsu, M.
    • Organizer
      Simulation on Temporospatial Dynamics of Cellular Metabolism
    • Place of Presentation
      Tokyo
    • Related Report
      2009 Final Research Report
  • [Book] E-Cell System: Basic Concepts and Applications(Simulation of metabolism in human erythrocytes.)2010

    • Author(s)
      Kinoshita A.
    • Publisher
      Landes Bioscience(in press)
    • Related Report
      2009 Final Research Report
  • [Remarks] Poster Award (Tokyo 2010. 3) 2nd Bio-Supercomputing Symposium 2009

    • Related Report
      2009 Final Research Report
  • [Remarks] Poster Award (Tokyo 2008. 12) Bio-Supercomputing Symposium 2008

    • Related Report
      2009 Final Research Report

URL: 

Published: 2008-04-01   Modified: 2016-04-21  

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi