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Development of COMBINE score function to improve accuracy of virtual screening

Research Project

Project/Area Number 20890261
Research Category

Grant-in-Aid for Young Scientists (Start-up)

Allocation TypeSingle-year Grants
Research Field Physical pharmacy
Research InstitutionKinki University

Principal Investigator

NAKAMURA Shinya  Kinki University, 薬学部, 助手 (10510109)

Project Period (FY) 2008 – 2010
Project Status Completed (Fiscal Year 2010)
Budget Amount *help
¥2,535,000 (Direct Cost: ¥1,950,000、Indirect Cost: ¥585,000)
Fiscal Year 2009: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Fiscal Year 2008: ¥1,365,000 (Direct Cost: ¥1,050,000、Indirect Cost: ¥315,000)
Keywords構造活性相関 / バーチャルスクリーニング / SBDD / IT創薬 / 計算化学
Research Abstract

To improve accuracy of virtual screening in which candidate medical compounds were searched fast by computer, COMBINE method that is one of the Quantitative Structure-Activity Relationship (QSAR) was applied as the scoring function. As the results of several validations, active compounds were able to be extracted at high throughput. Furthermore, binding mode of the compounds to their target protein could be predicted at the same time.

Report

(3 results)
  • 2010 Final Research Report ( PDF )
  • 2009 Annual Research Report
  • 2008 Annual Research Report
  • Research Products

    (6 results)

All 2009 2008

All Presentation (6 results)

  • [Presentation] サラシア属植物含有成分salacinolのαグルコシダーゼへの結合シミュレーション2009

    • Author(s)
      中村真也, 高平和典, 仲西功
    • Organizer
      第3回食品薬学シンポジウム
    • Place of Presentation
      近畿大学
    • Year and Date
      2009-11-13
    • Related Report
      2010 Final Research Report
  • [Presentation] サラシア属植物含有成分 salacinol のαグルコシダーゼへの結合シミュレーション2009

    • Author(s)
      中村真也, 高平和典, 仲西功
    • Organizer
      第3回食品薬学シンポジウム
    • Place of Presentation
      近畿大学
    • Year and Date
      2009-11-13
    • Related Report
      2009 Annual Research Report
  • [Presentation] 新規αグルコシダーゼ阻害剤探索へ向けたsalacinolの結合様式推定2009

    • Author(s)
      中村真也, 高平和典, 仲西功
    • Organizer
      第59回日本薬学会近畿支部総会・大会
    • Place of Presentation
      近畿大学
    • Year and Date
      2009-10-24
    • Related Report
      2010 Final Research Report
  • [Presentation] 新規αグルコシダーゼ阻害剤探索へ向けた salacinol の結合様式推定2009

    • Author(s)
      中村真也, 高平和典, 仲西功
    • Organizer
      第59回日本薬学会近畿支部総会・大会
    • Place of Presentation
      近畿大学
    • Year and Date
      2009-10-24
    • Related Report
      2009 Annual Research Report
  • [Presentation] Docking-pose prediction by a receptor-based tailor-made scoring function2008

    • Author(s)
      中村真也, 北浦和夫, 仲西功
    • Organizer
      The 8th China-Japan Joint Symposium On Drug Design and Development
    • Place of Presentation
      神戸国際会議場
    • Year and Date
      2008-11-03
    • Related Report
      2010 Final Research Report
  • [Presentation] Docking-pose prediction by a receptor-based tailor-made scoring function2008

    • Author(s)
      中村真也
    • Organizer
      The 8^<th> China-Japan Joint Symposium On Drug Design and Development
    • Place of Presentation
      神戸国際会議場
    • Year and Date
      2008-11-03
    • Related Report
      2008 Annual Research Report

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Published: 2008-04-01   Modified: 2016-04-21  

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