| Project/Area Number |
20F20705
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| Research Category |
Grant-in-Aid for JSPS Fellows
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| Allocation Type | Single-year Grants |
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| Section | 外国 |
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| Review Section |
Basic Section 43030:Functional biochemistry-related
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| Research Institution | Okinawa Institute of Science and Technology Graduate University |
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Principal Investigator |
LAURINO Paola 沖縄科学技術大学院大学, タンパク質工学・進化ユニット, 准教授 (90812256)
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| Co-Investigator(Kenkyū-buntansha) |
CLIFTON BENJAMIN 沖縄科学技術大学院大学, タンパク質工学・進化ユニット, 外国人特別研究員
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| Project Period (FY) |
2020-07-29 – 2022-03-31
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| Project Status |
Completed (Fiscal Year 2021)
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| Budget Amount *help |
¥2,300,000 (Direct Cost: ¥2,300,000)
Fiscal Year 2021: ¥1,100,000 (Direct Cost: ¥1,100,000)
Fiscal Year 2020: ¥1,200,000 (Direct Cost: ¥1,200,000)
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| Keywords | tRNA / mistranslation / RNA modification / evolution |
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| Outline of Research at the Start |
The aim of the proposed research is to examine how bacteria adapt to changes in tRNA modifications, and to evaluate how changes in tRNA modifications affect the evolution of new protein functions. Because there is ample evidence that mistranslation impacts protein evolution and that mistranslation can be controlled by tRNA modifications, we expect that the research will uncover a relationship between tRNA modifications and the evolution of new protein functions.
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| Outline of Annual Research Achievements |
Out of the three aims of the proposed research, I completed Aim 1 successfully and published the results. Work on Aims 2 and 3 is still ongoing.
In Aim 1, we studied the function of the tRNA modification m1G37 in bacteria. This modification, introduced by the tRNA methyltransferase TrmD, is thought to be essential for growth in bacteria because it prevents frameshift errors that have a deleterious effect on protein function. However, many other tRNA modifications have a similar role in preventing frameshift errors, so it was unclear why m1G37 is particularly essential. To address this question, we performed an evolutionary repair experiment, studying the evolutionary adaptation of Escherichia coli to mutations in the trmD gene. Surprisingly, the mutant bacteria showed slow growth even if m1G37 was completely abolished, and showed almost full recovery of growth after several weeks of evolution. Whole-genome sequencing showed that this was achieved mainly through duplication and mutation of the gene proS, which is responsible for aminoacylation of proline tRNA. This suggested that the main function of m1G37 is related to aminoacylation rather than mistranslation, which we confirmed using biochemical and growth assays. These results provide further evidence that bacteria have a high tolerance for protein mistranslation, show that evolutionary repair can reveal hidden functions of essential genes, and have implications for development of antibiotics targeting trmD
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| Research Progress Status |
令和3年度が最終年度であるため、記入しない。
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| Strategy for Future Research Activity |
令和3年度が最終年度であるため、記入しない。
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