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Advanced phage-display method with high efficiency by magnetic orientation of rod-like viruses

Research Project

Project/Area Number 20H02791
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Review Section Basic Section 35010:Polymer chemistry-related
Research InstitutionInstitute of Physical and Chemical Research

Principal Investigator

Ishida Yasuhiro  国立研究開発法人理化学研究所, 創発物性科学研究センター, チームリーダー (20343113)

Project Period (FY) 2020-04-01 – 2023-03-31
Project Status Completed (Fiscal Year 2022)
Budget Amount *help
¥17,550,000 (Direct Cost: ¥13,500,000、Indirect Cost: ¥4,050,000)
Fiscal Year 2022: ¥6,500,000 (Direct Cost: ¥5,000,000、Indirect Cost: ¥1,500,000)
Fiscal Year 2021: ¥5,720,000 (Direct Cost: ¥4,400,000、Indirect Cost: ¥1,320,000)
Fiscal Year 2020: ¥5,330,000 (Direct Cost: ¥4,100,000、Indirect Cost: ¥1,230,000)
Keywordsファージディスプレイ法 / 分子進化工学 / 親和性選択 / ライブラリ / 磁場配向 / ファージディスプレイ 法
Outline of Research at the Start

標的に対し強固に結合するペプチドを得る上で、ファージディスプレイ法は有用な手法であるが、提示ペプチドよりはるかに巨大なファージ外殻が標的に非特異的に吸着し、選別効率を低下させることが長年の問題であった。本研究では、平滑な基板に固定された標的物質にファージライブラリを相互作用させる際、磁場でファージを垂直方向に配向することにより非特異吸着を軽減するという、新たなファージディスプレ法の開拓を目指す。

Outline of Final Research Achievements

Although phage display selection using a library of M13 bacteriophage has become a powerful tool for finding peptides that bind to target materials on demand, a remaining concern of this method is the interference by the M13 main body, which is a huge filament >1000 times larger than the displayed peptide, and therefore would nonspecifically adhere to the target or sterically inhibit the binding of the displayed peptide. Meanwhile, filamentous phages are known to be orientable by an external magnetic field. This work proved that the magnetic orientation of M13 filaments vertical to the target surface significantly affects the selection. When the target surface was affinitive to the M13 main body, this orientation notably suppressed the nonspecific adhesion. Furthermore, when the target surface was less affinitive to the M13 main body and intrinsically free from the nonspecific adhesion, this orientation drastically changed the population of M13 clones selected from the library.

Academic Significance and Societal Importance of the Research Achievements

2018年ノーベル化学賞の対象ともなったファージディスプレイ法が、その創設以来抱える問題(巨大なファージ外殻による吸着選択効率の低下)に対し、化学物質の添加を必要とせずにクリーンな物理的刺激のみを用い、様々な標的物質に対し適応できる解決法を提示した。

Report

(4 results)
  • 2022 Annual Research Report   Final Research Report ( PDF )
  • 2021 Annual Research Report
  • 2020 Annual Research Report
  • Research Products

    (17 results)

All 2023 2022 2021 2020

All Journal Article (4 results) (of which Peer Reviewed: 4 results,  Open Access: 1 results) Presentation (13 results) (of which Int'l Joint Research: 4 results,  Invited: 10 results)

  • [Journal Article] Efficient Preparation of Stereopure Amphiphilic 1,2-Amino Alcohols by Using Preparative Enantioselective HPLC2022

    • Author(s)
      Hayato Kanai, Kuniyo Yamada, Koichi Kodama, and Yasuhiro Ishida
    • Journal Title

      Chirality

      Volume: 34 Issue: 2 Pages: 295-305

    • DOI

      10.1002/chir.23395

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Supramolecular Architecture of an Amphiphilic Amino Alcohol as a Versatile Chiral Environment for Stereocontrolled Photoreaction of Various Anthracenes2022

    • Author(s)
      Hayato Kanai, Kuniyo Yamada, Krishnachary Salikolimi, Koichi Kodama, and Yasuhiro Ishida
    • Journal Title

      Chemistry A European Journal

      Volume: 28 Issue: 62

    • DOI

      10.1002/chem.202201940

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Two‐Step Divergent Synthesis of Monodisperse and Ultra‐Long Bottlebrush Polymers from an Easily Purifiable ROMP Monomer2021

    • Author(s)
      Yamauchi Yoshihiro、Horimoto Noriko Nishizawa、Yamada Kuniyo、Matsushita Yoshitaka、Takeuchi Masayuki、Ishida Yasuhiro
    • Journal Title

      Angewandte Chemie International Edition

      Volume: 60 Issue: 3 Pages: 1528-1534

    • DOI

      10.1002/anie.202009759

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A mechanically adaptive hydrogel with a reconfigurable network consisting entirely of inorganic nanosheets and water2020

    • Author(s)
      Koki Sano, Naoki Igarashi, Yasuo Ebina, Takayoshi Sasaki, Takaaki Hikima, Takuzo Aida, Yasuhiro Ishida
    • Journal Title

      Nature Communications

      Volume: 11 Issue: 1 Pages: 6026-6026

    • DOI

      10.1038/s41467-020-19905-4

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Presentation] Nanocolloid-Based Soft Materials with Anisotropy, Autonomy, and Polarity2023

    • Author(s)
      Yasuhiro Ishida
    • Organizer
      5th Stockholm-Tokyo Workshop 2023
    • Related Report
      2022 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 生物に近づく精密合成ソフトマテリアル:異方性・自律性・階層性・方向性2022

    • Author(s)
      石田 康博
    • Organizer
      第71回高分子討論会
    • Related Report
      2022 Annual Research Report
    • Invited
  • [Presentation] コロイド粒子の磁場配向に基づくソフトマテリアルの精密合成2022

    • Author(s)
      石田 康博
    • Organizer
      第31回ポリマー材料フォーラム
    • Related Report
      2022 Annual Research Report
    • Invited
  • [Presentation] Macroscopically Oriented Helical Nanopores for Aligning Chromophores Noncentrosymmetrically2022

    • Author(s)
      Yasuhiro Ishida
    • Organizer
      International CREST-CPL Conference (ICCC-2022) in Awaji
    • Related Report
      2021 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] コロイドが水中につくる巨大格子のテンプレート機能2022

    • Author(s)
      石田 康博
    • Organizer
      日本化学会第102春季年会
    • Related Report
      2021 Annual Research Report
    • Invited
  • [Presentation] 磁場で制御されるファージ集合体の可変秩序構造2022

    • Author(s)
      王 樹旭、内田 紀之、石田 康博、相田 卓三
    • Organizer
      日本化学会第102春季年会
    • Related Report
      2021 Annual Research Report
  • [Presentation] Bioinspired Soft Materials with Anisotropic Structures2021

    • Author(s)
      Yasuhiro Ishida
    • Organizer
      Biomaterials International 2021
    • Related Report
      2021 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 分子フラスコの科学:キラル分子の分離・検出・生産・配列2021

    • Author(s)
      石田 康博
    • Organizer
      第 97回高分子若手研究会
    • Related Report
      2021 Annual Research Report
    • Invited
  • [Presentation] 殆どが水でできたフォトニック結晶:光を操るための全く新しいツール2021

    • Author(s)
      石田 康博
    • Organizer
      “光”機到来!Qコロキウム 第13回
    • Related Report
      2020 Annual Research Report
    • Invited
  • [Presentation] Magnetically controllable phage assembly with centimeter sizescale2021

    • Author(s)
      Shuxu wang, Yasuhiro Ishida, Noriyuki Uchida, and Takuzo Aida
    • Organizer
      日本化学会 第101春季年会
    • Related Report
      2020 Annual Research Report
  • [Presentation] ついに実用的機能を発揮し始めた、らせん超分子ポリマー2020

    • Author(s)
      石田 康博
    • Organizer
      CEMS Topical Meeting Online "超分子ポリマーの進化系"
    • Related Report
      2020 Annual Research Report
  • [Presentation] Helical supramolecular polymers with rationally designed binding sites for chiral guest recognition2020

    • Author(s)
      Yasuhiro Ishida
    • Organizer
      Molecular Chirality Asia 2020
    • Related Report
      2020 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 生物に近づく精密ソフトマテリアル -異方性・階層性・自立性-2020

    • Author(s)
      石田 康博
    • Organizer
      関東高分子若手研究会 秋の講演会
    • Related Report
      2020 Annual Research Report
    • Invited

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Published: 2020-04-28   Modified: 2024-01-30  

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