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Detection of biomolecules by using chiral amplification system composed of artificial nucleic acids

Research Project

Project/Area Number 20H02858
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Review Section Basic Section 37010:Bio-related chemistry
Research InstitutionNagoya University

Principal Investigator

Kashida Hiromu  名古屋大学, 工学研究科, 准教授 (30452189)

Project Period (FY) 2020-04-01 – 2023-03-31
Project Status Completed (Fiscal Year 2022)
Budget Amount *help
¥17,940,000 (Direct Cost: ¥13,800,000、Indirect Cost: ¥4,140,000)
Fiscal Year 2022: ¥4,030,000 (Direct Cost: ¥3,100,000、Indirect Cost: ¥930,000)
Fiscal Year 2021: ¥5,590,000 (Direct Cost: ¥4,300,000、Indirect Cost: ¥1,290,000)
Fiscal Year 2020: ¥8,320,000 (Direct Cost: ¥6,400,000、Indirect Cost: ¥1,920,000)
Keywordsキラル増幅 / 人工核酸 / 円偏光発光 / 円二色性 / SNA / 生体物質検出 / CPL
Outline of Research at the Start

本研究では我々が開発した人工核酸であるSNAを利用したキラル増幅系を開発することを目指す。キラル増幅系はアキラルな構造体にキラル分子を添加した際に、そのキラリティが大幅に増大する現象である。しかしながら、これまで核酸間の二重鎖形成を利用したキラル増幅系は報告されていない。本研究が実現できれば、キラルな生体分子を検出する汎用性の高い手法となることが期待できる。

Outline of Final Research Achievements

In this study, we aimed to develop a chiral amplification system utilizing serinol nucleic acid (SNA). First, we prepared a one-dimensional nano structure by hybridizing achiral SNA strands. When chiral nucleic acid was added, CD intensity drastically increased. Thus, chiral amplification system triggered by duplex formation was successfully developed for the first time. Then we modified SNA nano structures with pyrene. The structure expressed circularly polarized luminescence (CPL) upon the addition of chiral nucleic acids. We also succeeded to develop a chiral amplification system triggered by DNA.

Academic Significance and Societal Importance of the Research Achievements

生体分子はほぼ全てキラルであるため、キラリティに基づいた検出法を開発することが出来れば、生体分子を検出する非常に汎用性の高い手法となることが期待できる。本研究では、核酸のキラリティを増幅し、円二色性や円偏光発光によって検出する全く新しい手法を開発した。今後、これを利用した天然核酸検出や他の生体分子検出への応用が期待できる。

Report

(4 results)
  • 2022 Annual Research Report   Final Research Report ( PDF )
  • 2021 Annual Research Report
  • 2020 Annual Research Report
  • Research Products

    (17 results)

All 2023 2022 2021 2020

All Journal Article (10 results) (of which Peer Reviewed: 10 results,  Open Access: 2 results) Presentation (7 results) (of which Int'l Joint Research: 2 results,  Invited: 5 results)

  • [Journal Article] Orientational Control of Circularly Polarized Luminescence from Pyrene Clusters by Using a DNA Scaffold2023

    • Author(s)
      Kashida Hiromu、Ito Yuka、Kakuta Takahiro、Ogoshi Tomoki、Asanuma Hiroyuki
    • Journal Title

      Chemistry - A European Journal

      Volume: 29 Issue: 22

    • DOI

      10.1002/chem.202300182

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Methyl group configuration on acyclic threoninol nucleic acids (aTNAs) impacts supramolecular properties2022

    • Author(s)
      Murayama Keiji、Kashida Hiromu、Asanuma Hiroyuki
    • Journal Title

      Organic & Biomolecular Chemistry

      Volume: - Issue: 20 Pages: 4115-4122

    • DOI

      10.1039/d2ob00266c

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Color-Changing Fluorescent Barcode Based on Strand Displacement Reaction Enables Simple Multiplexed Labeling2022

    • Author(s)
      Makino Koki、Susaki Etsuo A.、Endo Motomu、Asanuma Hiroyuki、Kashida Hiromu
    • Journal Title

      Journal of the American Chemical Society

      Volume: 144 Issue: 4 Pages: 1572-1579

    • DOI

      10.1021/jacs.1c09844

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Xeno nucleic acids (XNAs) having non-ribose scaffolds with unique supramolecular properties2022

    • Author(s)
      Asanuma Hiroyuki、Kamiya Yukiko、Kashida Hiromu、Murayama Keiji
    • Journal Title

      Chemical Communications

      Volume: 58 Issue: 25 Pages: 3993-4004

    • DOI

      10.1039/d1cc05868a

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Pseudo Base Pairs that Exhibit High Duplex Stability and Orthogonality through Covalent and Non-covalent Interactions2021

    • Author(s)
      Kashida Hiromu、Asanuma Hiroyuki
    • Journal Title

      Journal of Synthetic Organic Chemistry, Japan

      Volume: 79 Issue: 11 Pages: 1013-1019

    • DOI

      10.5059/yukigoseikyokaishi.79.1013

    • NAID

      130008114808

    • ISSN
      0037-9980, 1883-6526
    • Year and Date
      2021-11-01
    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] A Pyrene‐Modified Serinol Nucleic Acid Nanostructure Converts the Chirality of Threoninol Nucleic Acids into Circularly Polarized Luminescence Signals2021

    • Author(s)
      Kashida Hiromu、Nishikawa Keiji、Ito Yuka、Murayama Keiji、Hayashi Ichiyo、Kakuta Takahiro、Ogoshi Tomoki、Asanuma Hiroyuki
    • Journal Title

      Chemistry A European Journal

      Volume: 27 Issue: 59 Pages: 14582-14585

    • DOI

      10.1002/chem.202102333

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Perylene‐Cy3 FRET System to Analyze Photoactive DNA Structures2021

    • Author(s)
      Kawai Hayato、Doi Tetsuya、Ito Yuka、Kameyama Tatsuya、Torimoto Tsukasa、Kashida Hiromu、Asanuma Hiroyuki
    • Journal Title

      Chemistry - A European Journal

      Volume: 27 Issue: 50 Pages: 12845-12850

    • DOI

      10.1002/chem.202101738

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Helical amplification system composed of artificial nucleic acids2021

    • Author(s)
      H. Kashida, K. Nishikawa, W. Shi,a T. Miyagawa, H. Yamashita, M. Abe and H. Asanuma
    • Journal Title

      Chemical Science

      Volume: 12 Issue: 5 Pages: 1656-1656

    • DOI

      10.1039/d0sc05245k

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Preparation of Artificial Hexaplex Composed of Non‐Natural Nucleic Acid2021

    • Author(s)
      Makino Koki、Hattori Yuhei、Kashida Hiromu、Asanuma Hiroyuki
    • Journal Title

      Current Protocols

      Volume: 1 Issue: 4 Pages: 1-24

    • DOI

      10.1002/cpz1.106

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Quantitative Analyses of F?rster Resonance Energy Transfer between Identical Pyrene Chromophores (Homo‐FRET) In DNA Scaffolds.2020

    • Author(s)
      Kashida Hiromu、Kawai Hayato、Azuma Hidenori、Araki Yasuyuki、Wada Takehiko、Asanuma Hiroyuki
    • Journal Title

      ChemPhotoChem

      Volume: 5 Issue: 2 Pages: 167-172

    • DOI

      10.1002/cptc.202000199

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed
  • [Presentation] 人工核酸を利用した機能性材料の開発2023

    • Author(s)
      樫田啓
    • Organizer
      第4回発動分子科学サロン
    • Related Report
      2022 Annual Research Report
    • Invited
  • [Presentation] 核酸の多様化を目指した人工核酸の開発2022

    • Author(s)
      樫田啓
    • Organizer
      第9回バイオ関連化学シンポジウム若手フォーラム
    • Related Report
      2022 Annual Research Report
    • Invited
  • [Presentation] Development of fluorescent probes detecting RNA2021

    • Author(s)
      Hiromu Kashida
    • Organizer
      Pacifichem2021
    • Related Report
      2021 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Precise control of dye interaction by using D-threoninol scaffold2021

    • Author(s)
      Hiromu Kashida
    • Organizer
      11th International Conference on Porphyrins & Phthalocyanines (ICPP-11)
    • Related Report
      2021 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 核酸の化学修飾とその応用2020

    • Author(s)
      樫田啓
    • Organizer
      第69回高分子討論会
    • Related Report
      2020 Annual Research Report
    • Invited
  • [Presentation] 人工核酸SNAナノ構造体を利用したキラル増幅2020

    • Author(s)
      樫田 啓, 西川慧史, 角田貴洋, 生越友樹, 浅沼浩之
    • Organizer
      第14回バイオ関連化学シンポジウム
    • Related Report
      2020 Annual Research Report
  • [Presentation] 人工核酸を利用したキラル増幅系の開発2020

    • Author(s)
      樫田 啓, 西川慧史, 林 一陽, 角田貴洋, 生越友樹, 浅沼浩之
    • Organizer
      第69回高分子学会年次大会(開催中止)
    • Related Report
      2020 Annual Research Report

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Published: 2020-04-28   Modified: 2024-01-30  

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