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A chromosome-scale collection of CRISPR mutants in Drosophila

Research Project

Project/Area Number 20H03246
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Review Section Basic Section 43060:System genome science-related
Research InstitutionTokyo University of Science (2021-2022)
National Institute of Genetics (2020)

Principal Investigator

Kondo Shu  東京理科大学, 先進工学部生命システム工学科, 准教授 (90408401)

Project Period (FY) 2020-04-01 – 2023-03-31
Project Status Completed (Fiscal Year 2022)
Budget Amount *help
¥17,550,000 (Direct Cost: ¥13,500,000、Indirect Cost: ¥4,050,000)
Fiscal Year 2022: ¥6,110,000 (Direct Cost: ¥4,700,000、Indirect Cost: ¥1,410,000)
Fiscal Year 2021: ¥5,330,000 (Direct Cost: ¥4,100,000、Indirect Cost: ¥1,230,000)
Fiscal Year 2020: ¥6,110,000 (Direct Cost: ¥4,700,000、Indirect Cost: ¥1,410,000)
Keywordsゲノム編集 / ショウジョウバエ / CRISPR/Cas9 / 網羅的ノックアウト
Outline of Research at the Start

全ての生命現象はゲノム中の遺伝子により引き起こされる。従って、個々の生物の仕組みを完全に理解するためには、全ての遺伝子の機能を明らかにする必要がある。本研究では、遺伝子操作技術の最も進んだ実験動物であるキイロショウジョウバエをモデルとして、網羅的な遺伝子ノックアウト解析により個々の遺伝子の機能を明らかにし、ゲノムの完全理解に向けた基礎データを蓄積する。

Outline of Final Research Achievements

Determining the function of all genes in a genome is one of the major goals of modern biology. Arguably the most informative clue to gene function is the phenotype of loss-of-function mutants. Therefore, it is essential to create mutants for all genes and describe their phenotypes in order to fully understand the genome. In this study, we generated loss-of-function mutants for approximately 2,500 of the 14,000 genes in the Drosophila genes. Of these, only about 25% of the genes were essential for development and survival. Among viable mutants, we found a few that showed abnormalities in higher-order functions such as metabolism and behavior, providing the basis for further detailed analysis.

Academic Significance and Societal Importance of the Research Achievements

本研究で作成したgRNA系統及びノックアウト系統は、国立遺伝学研究所ショウジョウバエ・ストックセンターより順次公開している(https://shigen.nig.ac.jp/fly/nigfly/)。系統は国内外の研究者が実費のみで購入することが可能であり、既に多くの研究者に活用されている。本研究で作成したノックアウトコレクションは、ショウジョウバエ研究全体を大きく推進する重要なリソースとして、今後長く利用されていくことが期待される。

Report

(4 results)
  • 2022 Annual Research Report   Final Research Report ( PDF )
  • 2021 Annual Research Report
  • 2020 Annual Research Report
  • Research Products

    (26 results)

All 2023 2022 2021 2020

All Journal Article (25 results) (of which Int'l Joint Research: 18 results,  Peer Reviewed: 25 results,  Open Access: 14 results) Presentation (1 results) (of which Int'l Joint Research: 1 results,  Invited: 1 results)

  • [Journal Article] Functional impact of subunit composition and compensation on Drosophila melanogaster nicotinic receptors?targets of neonicotinoids2023

    • Author(s)
      Komori Yuma、Takayama Koichi、Okamoto Naoki、Kamiya Masaki、Koizumi Wataru、Ihara Makoto、Misawa Daitaro、Kamiya Kotaro、Yoshinari Yuto、Seike Kazuki、Kondo Shu、Tanimoto Hiromu、Niwa Ryusuke、Sattelle David B.、Matsuda Kazuhiko
    • Journal Title

      PLOS Genetics

      Volume: 19 Issue: 2 Pages: e1010522-e1010522

    • DOI

      10.1371/journal.pgen.1010522

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Mod(mdg4) variants repress telomeric retrotransposon HeT-A by blocking subtelomeric enhancers2022

    • Author(s)
      Chikara Takeuchi, Moe Yokoshi, Shu Kondo, Aoi Shibuya, Kuniaki Saito, Takashi Fukaya, Haruhiko Siomi, Yuka W Iwasaki
    • Journal Title

      Nucleic Acids Research

      Volume: 50 Issue: 20 Pages: 11580-11599

    • DOI

      10.1093/nar/gkac1034

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Nutrient responding peptide hormone CCHamide-2 consolidates appetitive memory2022

    • Author(s)
      Yamagata Nobuhiro、Imanishi Yasuhito、Wu Hongyang、Kondo Shu、Sano Hiroko、Tanimoto Hiromu
    • Journal Title

      Frontiers in Behavioral Neuroscience

      Volume: 16 Pages: 986064-986064

    • DOI

      10.3389/fnbeh.2022.986064

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Yorkie drives supercompetition by non-autonomous induction of autophagy via bantam microRNA in Drosophila2022

    • Author(s)
      Nagata Rina、Akai Nanami、Kondo Shu、Saito Kuniaki、Ohsawa Shizue、Igaki Tatsushi
    • Journal Title

      Current Biology

      Volume: 32 Issue: 5 Pages: 1064-1076

    • DOI

      10.1016/j.cub.2022.01.016

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Molecular and genetic dissection of recursive splicing2021

    • Author(s)
      Joseph Brian、Scala Chaz、Kondo Shu、Lai Eric C
    • Journal Title

      Life Science Alliance

      Volume: 5 Issue: 1 Pages: e202101063-e202101063

    • DOI

      10.26508/lsa.202101063

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] The sugar-responsive enteroendocrine neuropeptide F regulates lipid metabolism through glucagon-like and insulin-like hormones in Drosophila melanogaster2021

    • Author(s)
      Yoshinari Yuto、Kosakamoto Hina、Kamiyama Takumi、Hoshino Ryo、Matsuoka Rena、Kondo Shu、Tanimoto Hiromu、Nakamura Akira、Obata Fumiaki、Niwa Ryusuke
    • Journal Title

      Nature Communications

      Volume: 12 Issue: 1 Pages: 4818-4818

    • DOI

      10.1038/s41467-021-25146-w

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] The Hippo pathway uses different machinery to control cell fate and organ size2021

    • Author(s)
      Pojer Jonathan M.、Manning Samuel A.、Kroeger Benjamin、Kondo Shu、Harvey Kieran F.
    • Journal Title

      iScience

      Volume: 24 Issue: 8 Pages: 102830-102830

    • DOI

      10.1016/j.isci.2021.102830

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] A systematic analysis of microtubule‐destabilizing factors during dendrite pruning in Drosophila2021

    • Author(s)
      Bu Shufeng、Yong Wei Lin、Lim Bryan Jian Wei、Kondo Shu、Yu Fengwei
    • Journal Title

      EMBO reports

      Volume: 22 Issue: 10

    • DOI

      10.15252/embr.202152679

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Crumbs and the apical spectrin cytoskeleton regulate R8 cell fate in the Drosophila eye2021

    • Author(s)
      Pojer Jonathan M.、Saiful Hilmi Abdul Jabbar、Kondo Shu、Harvey Kieran F.
    • Journal Title

      PLOS Genetics

      Volume: 17 Issue: 6 Pages: e1009146-e1009146

    • DOI

      10.1371/journal.pgen.1009146

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] A population of neurons that produce hugin and express the diuretic hormone 44 receptor gene projects to the corpora allata in Drosophila melanogaster2021

    • Author(s)
      Mizuno Yosuke、Imura Eisuke、Kurogi Yoshitomo、Shimada‐Niwa Yuko、Kondo Shu、Tanimoto Hiromu、Huckesfeld Sebastian、Pankratz Michael J.、Niwa Ryusuke
    • Journal Title

      Development, Growth & Differentiation

      Volume: 63 Issue: 4-5 Pages: 249-261

    • DOI

      10.1111/dgd.12733

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] A secreted factor NimrodB4 promotes the elimination of apoptotic corpses by phagocytes in Drosophila2021

    • Author(s)
      Petrignani Bianca、Rommelaere Samuel、Hakim‐Mishnaevski Ketty、Masson Florent、Ramond Elodie、Hilu‐Dadia Reut、Poidevin Mickael、Kondo Shu、Kurant Estee、Lemaitre Bruno
    • Journal Title

      EMBO reports

      Volume: 22 Issue: 9

    • DOI

      10.15252/embr.202052262

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] The neuropeptide allatostatin C from clock-associated DN1p neurons generates the circadian rhythm for oogenesis2021

    • Author(s)
      Zhang Chen、Daubnerova Ivana、Jang Yong-Hoon、Kondo Shu、?it?an Du?an、Kim Young-Joon
    • Journal Title

      Proceedings of the National Academy of Sciences

      Volume: 118 Issue: 4

    • DOI

      10.1073/pnas.2016878118

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Voluntary intake of psychoactive substances is regulated by the dopamine receptor Dop1R1 in Drosophila2021

    • Author(s)
      Kanno Mai、Hiramatsu Shun、Kondo Shu、Tanimoto Hiromu、Ichinose Toshiharu
    • Journal Title

      Scientific Reports

      Volume: 11 Issue: 1 Pages: 3432-3440

    • DOI

      10.1038/s41598-021-82813-0

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Neuropeptide F signaling regulates parasitoid-specific germline development and egg-laying in Drosophila2021

    • Author(s)
      Sadanandappa Madhumala K.、Sathyanarayana Shivaprasad H.、Kondo Shu、Bosco Giovanni
    • Journal Title

      PLOS Genetics

      Volume: 17 Issue: 3 Pages: e1009456-e1009456

    • DOI

      10.1371/journal.pgen.1009456

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] The adipokine NimrodB5 regulates peripheral hematopoiesis in Drosophila2020

    • Author(s)
      Ramond Elodie、Petrignani Bianca、Dudzic Jan Paul、Boquete Jean‐Philippe、Poidevin Micka?l、Kondo Shu、Lemaitre Bruno
    • Journal Title

      The FEBS Journal

      Volume: 287 Issue: 16 Pages: 3399-3426

    • DOI

      10.1111/febs.15237

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Large-Scale Transgenic Drosophila Resource Collections for Loss- and Gain-of-Function Studies2020

    • Author(s)
      Zirin Jonathan et al.
    • Journal Title

      Genetics

      Volume: 214 Issue: 4 Pages: 755-767

    • DOI

      10.1534/genetics.119.302964

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Renal Purge of Hemolymphatic Lipids Prevents the Accumulation of ROS-Induced Inflammatory Oxidized Lipids and Protects Drosophila from Tissue Damage2020

    • Author(s)
      Li Xiaoxue、Rommelaere Samuel、Kondo Shu、Lemaitre Bruno
    • Journal Title

      Immunity

      Volume: 52 Issue: 2 Pages: 374-387.e6

    • DOI

      10.1016/j.immuni.2020.01.008

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Pits and CtBP Control Tissue Growth in Drosophila melanogaster with the Hippo Pathway Transcription Repressor Tgi2020

    • Author(s)
      Vissers Joseph H. A.、Dent Lucas G.、House Colin M.、Kondo Shu、Harvey Kieran F.
    • Journal Title

      Genetics

      Volume: 215 Issue: 1 Pages: 117-128

    • DOI

      10.1534/genetics.120.303147

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] The Corazonin-PTTH Neuronal Axis Controls Systemic Body Growth by Regulating Basal Ecdysteroid Biosynthesis in Drosophila melanogaster2020

    • Author(s)
      Imura Eisuke、Shimada-Niwa Yuko、Nishimura Takashi、Huckesfeld Sebastian、Schlegel Philipp、Ohhara Yuya、Kondo Shu、Tanimoto Hiromu、Cardona Albert、Pankratz Michael J.、Niwa Ryusuke
    • Journal Title

      Current Biology

      Volume: 30 Issue: 11 Pages: 1-10

    • DOI

      10.1016/j.cub.2020.03.050

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Dopamine Receptor Dop1R2 Stabilizes Appetitive Olfactory Memory through the Raf/MAPK Pathway in Drosophila2020

    • Author(s)
      Sun Huan、Nishioka Tomoki、Hiramatsu Shun、Kondo Shu、Amano Mutsuki、Kaibuchi Kozo、Ichinose Toshiharu、Tanimoto Hiromu
    • Journal Title

      The Journal of Neuroscience

      Volume: 40 Issue: 14 Pages: 2935-2942

    • DOI

      10.1523/jneurosci.1572-19.2020

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] A New Role for Neuropeptide F Signaling in Controlling Developmental Timing and Body Size in Drosophila melanogaster2020

    • Author(s)
      Kannangara Jade R.、Henstridge Michelle A.、Parsons Linda M.、Kondo Shu、Mirth Christen K.、Warr Coral G.
    • Journal Title

      Genetics

      Volume: 216 Issue: 1 Pages: 135-144

    • DOI

      10.1534/genetics.120.303475

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Extensive and diverse patterns of cell death sculpt neural networks in insects2020

    • Author(s)
      Pop Sinziana、Chen Chin-Lin、Sproston Connor J、Kondo Shu、Ramdya Pavan、Williams Darren W
    • Journal Title

      eLife

      Volume: 9

    • DOI

      10.7554/elife.59566

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Neuronal octopamine signaling regulates mating-induced germline stem cell increase in female Drosophila melanogaster2020

    • Author(s)
      Yoshinari Yuto、Ameku Tomotsune、Kondo Shu、Tanimoto Hiromu、Kuraishi Takayuki、Shimada-Niwa Yuko、Niwa Ryusuke
    • Journal Title

      eLife

      Volume: 9 Pages: 57101-57101

    • DOI

      10.7554/elife.57101

    • NAID

      120007190963

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Sequential activation of transcriptional repressors promotes progenitor commitment by silencing stem cell identity genes2020

    • Author(s)
      Rives-Quinto Noemi、Komori Hideyuki、Ostgaard Cyrina M、Janssens Derek H、Kondo Shu、Dai Qi、Moore Adrian W、Lee Cheng-Yu
    • Journal Title

      eLife

      Volume: 9

    • DOI

      10.7554/elife.56187

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Drosophila miR-87 promotes dendrite regeneration by targeting the transcriptional repressor Tramtrack692020

    • Author(s)
      Kitatani Yasuko、Tezuka Akane、Hasegawa Eri、Yanagi Satoyoshi、Togashi Kazuya、Tsuji Masato、Kondo Shu、Parrish Jay Z.、Emoto Kazuo
    • Journal Title

      PLOS Genetics

      Volume: 16 Issue: 8 Pages: e1008942-e1008942

    • DOI

      10.1371/journal.pgen.1008942

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Presentation] Lessons learned and resources available from the NIG-Japan systematic large-scale in vivo CRISPR knockout project2023

    • Author(s)
      Shu Kondo
    • Organizer
      American Drosophila Research Conference
    • Related Report
      2022 Annual Research Report
    • Int'l Joint Research / Invited

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Published: 2020-04-28   Modified: 2024-01-30  

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