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Study on flavin-dependent epigenome that links nutritional environment to phenotype

Research Project

Project/Area Number 20H04108
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Review Section Basic Section 59040:Nutrition science and health science-related
Research InstitutionKumamoto University

Principal Investigator

Hino Shinjiro  熊本大学, 発生医学研究所, 准教授 (00448523)

Project Period (FY) 2020-04-01 – 2023-03-31
Project Status Completed (Fiscal Year 2022)
Budget Amount *help
¥17,680,000 (Direct Cost: ¥13,600,000、Indirect Cost: ¥4,080,000)
Fiscal Year 2022: ¥5,070,000 (Direct Cost: ¥3,900,000、Indirect Cost: ¥1,170,000)
Fiscal Year 2021: ¥5,070,000 (Direct Cost: ¥3,900,000、Indirect Cost: ¥1,170,000)
Fiscal Year 2020: ¥7,540,000 (Direct Cost: ¥5,800,000、Indirect Cost: ¥1,740,000)
Keywordsリボフラビン / エピゲノム / LSD1 / 栄養素代謝 / ミトコンドリア / 代謝 / 脂肪組織 / フラボタンパク質 / ヒストン修飾 / ビタミンB2 / 肥満 / DNAメチル化
Outline of Research at the Start

栄養環境がDNA・ヒストン修飾等のエピゲノムを変化させ、長期的な体質(=表現型)に影響を及ぼす可能性が提唱されているが、その実体は不明である。リボフラビン(Rf, ビタミンB2)は必須栄養素であり、短期的欠乏症は知られているが、摂取の多寡が長期的体質に及ぼす影響は知られていない。Rfの代謝物(フラビン類)は、ヒストン脱メチル化酵素LSD1及びLSD2の補酵素として働く他、様々なタンパク質の機能調節を介してエピゲノム形成に寄与する可能性がある。そこで本研究では、組織特異的にRf代謝不全を来すマウスを用いて、フラビン依存性エピゲノム制御の仕組みを解明し、その表現型形成における役割を明らかにする。

Outline of Final Research Achievements

Riboflavin (Rf) is an essential micronutrient. However, its long-term effects on tissue development and homeostasis remain unknown. In this project, we explored how Rf contributes to cellular functions and tissue homeostasis through the modulation of epigenetic and transcriptional factors such as histone demethylases LSD1 and LSD2. Within the duration of this project, we revealed the contribution of Rf metabolism in tissue homeostasis, the regulation of metabolic phenotypes and environmental responses by LSD1, and the mechanisms of mitochondria-to-nucleus signaling. Overall, we succeeded in elucidating the intimate relationship between nutrient metabolism and epigenetic gene regulation.

Academic Significance and Societal Importance of the Research Achievements

本研究により、Rf代謝や様々な環境ストレスが細胞内代謝やシグナル伝達を介して転写・エピゲノム制御に作用する仕組みやその環境適応や組織恒常性における役割を明らかにすることができた。また、Rf依存的活性を持つLSD1が筋肉の加齢性変化に関わる可能性を報告した。これらの成果は、Rf摂取の多寡が健康寿命に影響を及ぼす可能性を示唆しており、今後の応用展開が期待できる。また、本研究で構築した研究アプローチは、後続の栄養エピジェネティクス研究に幅広く活用できるものである。

Report

(4 results)
  • 2022 Annual Research Report   Final Research Report ( PDF )
  • 2021 Annual Research Report
  • 2020 Annual Research Report
  • Research Products

    (34 results)

All 2023 2022 2021 2020 Other

All Int'l Joint Research (5 results) Journal Article (18 results) (of which Int'l Joint Research: 7 results,  Peer Reviewed: 14 results,  Open Access: 14 results) Presentation (6 results) (of which Int'l Joint Research: 1 results,  Invited: 4 results) Remarks (5 results)

  • [Int'l Joint Research] ケルン大学(ドイツ)

    • Related Report
      2022 Annual Research Report
  • [Int'l Joint Research] コーンケン大学(タイ)

    • Related Report
      2022 Annual Research Report
  • [Int'l Joint Research] ケルン大学(ドイツ)

    • Related Report
      2021 Annual Research Report
  • [Int'l Joint Research] Broad Institute(米国)

    • Related Report
      2021 Annual Research Report
  • [Int'l Joint Research] ケルン大学(ドイツ)

    • Related Report
      2020 Annual Research Report
  • [Journal Article] LSD1 defines the fiber type-selective responsiveness to environmental stress in skeletal muscle2023

    • Author(s)
      Araki Hirotaka、Hino Shinjiro、Anan Kotaro、Kuribayashi Kanji、Etoh Kan、Seko Daiki、Takase Ryuta、Kohrogi Kensaku、Hino Yuko、Ono Yusuke、Araki Eiichi、Nakao Mitsuyoshi
    • Journal Title

      eLife

      Volume: 12

    • DOI

      10.7554/elife.84618

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Lactic acidosis induces metabolic and phenotypic reprogramming in cholangiocarcinoma cells via the upregulation of thrombospondin‐12023

    • Author(s)
      Thamrongwaranggoon Ubonrat、Kuribayashi Kanji、Araki Hirotaka、Hino Yuko、Koga Tomoaki、Seubwai Wunchana、Wongkham Sopit、Nakao Mitsuyoshi、Hino Shinjiro
    • Journal Title

      Cancer Science

      Volume: 114 Issue: 4 Pages: 1541-1555

    • DOI

      10.1111/cas.15699

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Chromatin Immunoprecipitation Sequencing (ChIP-seq) for Detecting Histone Modifications and Modifiers2023

    • Author(s)
      Hino Shinjiro、Sato Tetsuya、Nakao Mitsuyoshi
    • Journal Title

      Methods in Molecular Biology

      Volume: 2577 Pages: 55-64

    • DOI

      10.1007/978-1-0716-2724-2_4

    • ISBN
      9781071627235, 9781071627242
    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Mitochondrial stress induces AREG expression and epigenomic remodeling through c-JUN and YAP-mediated enhancer activation2022

    • Author(s)
      Hino Yuko、Nagaoka Katsuya、Oki Shinya、Etoh Kan、Hino Shinjiro、Nakao Mitsuyoshi
    • Journal Title

      Nucleic Acids Research

      Volume: 50 Issue: 17 Pages: 9765-9779

    • DOI

      10.1093/nar/gkac735

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Lactic acidosis promotes aggressive features of cholangiocarcinoma cells via upregulating ALDH1A3 expression through EGFR axis2022

    • Author(s)
      Thamrongwaranggoon Ubonrat、Detarya Marutpong、Seubwai Wunchana、Saengboonmee Charupong、Hino Shinjiro、Koga Tomoaki、Nakao Mitsuyoshi、Wongkham Sopit
    • Journal Title

      Life Sciences

      Volume: 302 Pages: 120648-120648

    • DOI

      10.1016/j.lfs.2022.120648

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Biosynthesis of S-adenosyl-methionine enhances aging-related defects in Drosophila oogenesis2022

    • Author(s)
      Hayashi Yoshiki、Kashio Soshiro、Murotomi Kazutoshi、Hino Shinjiro、Kang Woojin、Miyado Kenji、Nakao Mitsuyoshi、Miura Masayuki、Kobayashi Satoru、Namihira Masakazu
    • Journal Title

      Scientific Reports

      Volume: 12 Issue: 1 Pages: 1-9

    • DOI

      10.1038/s41598-022-09424-1

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] リボフラビンとフラボタンパク質による細胞制御2022

    • Author(s)
      日野信次朗
    • Journal Title

      実験医学増刊(栄養・代謝物シグナルと食品機能)

      Volume: 40 Pages: 1161-1167

    • Related Report
      2022 Annual Research Report
  • [Journal Article] Advanced oxidation protein products contribute to chronic kidney disease-induced muscle atrophy by inducing oxidative stress via CD36/NADPH oxidase pathway2021

    • Author(s)
      Kato H, Watanabe H, Imafuku T, Arimura N, Fujita I, Noguchi I, Tanaka S, Nakano T, Tokumaru K, Enoki Y, Maeda H, Hino S, Tanaka M, Matsushita K, Fukagawa M, Maruyama T
    • Journal Title

      J Cachexia Sarcopenia Muscle

      Volume: 12 Issue: 6 Pages: 1832-1847

    • DOI

      10.1002/jcsm.12786

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Sexual fate of murine external genitalia development: Conserved transcriptional competency for male-biased genes in both sexes2021

    • Author(s)
      Kajioka Daiki、Suzuki Kentaro、Matsushita Shoko、Hino Shinjiro、Sato Tetsuya、Takada Shuji、Isono Kyoichi、Takeo Toru、Kajimoto Mizuki、Nakagata Naomi、Nakao Mitsuyoshi、Suyama Mikita、DeFalco Tony、Miyagawa Shinichi、Yamada Gen
    • Journal Title

      Proceedings of the National Academy of Sciences

      Volume: 118 Issue: 23

    • DOI

      10.1073/pnas.2024067118

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Lysine Demethylase 5A is Required for MYC Driven Transcription in Multiple Myeloma2021

    • Author(s)
      Ohguchi H、Park Paul M.C.、wang t、Gryder B E.、Ogiya D、kurata k、zhang x、Li D、pei c、Masuda T、Johansson C、Wimalasena V K、Kim Y、Hino S、Usuki S、Kawano Y、Samur M K、Tai Yu-Tzu、Munshi N C.、Matsuoka M、Ohtsuki S、Nakao M、Minami T、Lauberth S、Khan J、Oppermann U、Durbin A D.、Anderson K C.、Hideshima T、Qi J
    • Journal Title

      Blood Cancer Discovery

      Volume: in press Issue: 4 Pages: 370-387

    • DOI

      10.1158/2643-3230.bcd-20-0108

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] LSD1 defines erythroleukemia metabolism by controlling the lineage-specific transcription factors GATA1 and C/EBPα2021

    • Author(s)
      Kohrogi Kensaku、Hino Shinjiro、Sakamoto Akihisa、Anan Kotaro、Takase Ryuta、Araki Hirotaka、Hino Yuko、Araki Kazutaka、Sato Tetsuya、Nakamura Kimitoshi、Nakao Mitsuyoshi
    • Journal Title

      Blood Advances

      Volume: 5 Issue: 9 Pages: 2305-2318

    • DOI

      10.1182/bloodadvances.2020003521

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] 栄養環境適応におけるエピジェネティクス制御機構2021

    • Author(s)
      日野信次朗
    • Journal Title

      基礎老化研究

      Volume: 45 Pages: 19-24

    • Related Report
      2021 Annual Research Report
  • [Journal Article] 環境応答性エピゲノム形成と肥満の個人差2021

    • Author(s)
      日野信次朗,荒木裕貴,中尾光善
    • Journal Title

      実験医学増刊(個人差の理解へ向かう肥満症研究)

      Volume: 39 Pages: 761-766

    • Related Report
      2021 Annual Research Report
  • [Journal Article] Murine neonatal ketogenesis preserves mitochondrial energetics by preventing protein hyperacetylation2021

    • Author(s)
      Arima Yuichiro、Nakagawa Yoshiko、Takeo Toru、Ishida Toshifumi、Yamada Toshihiro、et al.
    • Journal Title

      Nature Metabolism

      Volume: 3 Issue: 2 Pages: 196-210

    • DOI

      10.1038/s42255-021-00342-6

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] High glucose-ROS conditions enhance the progression in cholangiocarcinoma via upregulation of MAN2A2 and CHD82021

    • Author(s)
      Thonsri U, Wongkham S, Wongkham C, Hino S, Nakao M, Roytrakul S, Koga T, Seubwai W
    • Journal Title

      Cancer Sci.

      Volume: 112 Issue: 1 Pages: 254-264

    • DOI

      10.1111/cas.14719

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Splicing- and demethylase-independent functions of LSD1 in zebrafish primitive hematopoiesis2020

    • Author(s)
      Tamaoki Junya、Takeuchi Miki、Abe Ryo、Kaneko Hiroshi、Wada Taeko、Hino Shinjiro、Nakao Mitsuyoshi、Furukawa Yusuke、Kobayashi Makoto
    • Journal Title

      Scientific Reports

      Volume: 10 Issue: 1 Pages: 8521-8521

    • DOI

      10.1038/s41598-020-65428-9

    • NAID

      120007163350

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Successful generation of epigenetic disease model mice by targeted demethylation of the epigenome.2020

    • Author(s)
      Horii T, Morita S, Hino S, Kimura M, Hino Y, Kogo H, Nakao M & Hatada I
    • Journal Title

      Genome Biology

      Volume: 21(1) Issue: 1 Pages: 77-77

    • DOI

      10.1186/s13059-020-01991-8

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] エピゲノムを介した栄養センシングと代謝恒常性の維持・調節2020

    • Author(s)
      荒木裕貴、日野信次朗、中尾光善
    • Journal Title

      糖尿病・内分泌代謝科

      Volume: 51 Pages: 315-322

    • NAID

      40022385753

    • Related Report
      2020 Annual Research Report
  • [Presentation] 環境因子とエピジェネティクス因子の相互作用による骨格筋の「質」と「量」の調節2022

    • Author(s)
      日野信次朗
    • Organizer
      日本基礎老化学会第43回シンポジウム
    • Related Report
      2022 Annual Research Report
    • Invited
  • [Presentation] Epigenetic regulation of energy metabolism in health and diseases2022

    • Author(s)
      Shinjiro Hino
    • Organizer
      Center of Translational Medicine Seminar, Khon Kaen University
    • Related Report
      2022 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 栄養シグナルによる代謝型可塑性の制御2022

    • Author(s)
      日野信次朗
    • Organizer
      日本栄養・食糧学会関東支部 第108回シンポジウム(栄養シグナルによる生体の代謝制御)
    • Related Report
      2021 Annual Research Report
    • Invited
  • [Presentation] 栄養シグナルとエピゲノムの連携による代謝表現型の形成2021

    • Author(s)
      日野信次朗、荒木裕貴、栗林寛至、中尾光善
    • Organizer
      第94回日本生化学会大会(シンポジウム:栄養素代謝による細胞制御とその破綻)
    • Related Report
      2021 Annual Research Report
  • [Presentation] 白血病細胞の代謝個性を生み出すエピジェネティクス機構 -多層オミクス解析の基礎と応用-2021

    • Author(s)
      日野信次朗
    • Organizer
      WAKO Web受託セミナー -NGSの基礎から最新トピックスまで-
    • Related Report
      2021 Annual Research Report
    • Invited
  • [Presentation] Control of metabolic phenotypes by flavin-dependent histone demethylases2020

    • Author(s)
      日野信次朗、荒木裕貴、興梠健作、中尾光善
    • Organizer
      第43回日本分子生物学会年会
    • Related Report
      2020 Annual Research Report
  • [Remarks] 熊本大学発生医学研究所HP

    • URL

      http://www.imeg.kumamoto-u.ac.jp

    • Related Report
      2022 Annual Research Report 2021 Annual Research Report 2020 Annual Research Report
  • [Remarks] プレスリリース「筋肉の過剰な環境適応を抑える仕組みを解明」

    • URL

      https://www.kumamoto-u.ac.jp/whatsnew/seimei-sentankenkyu/20230209

    • Related Report
      2022 Annual Research Report
  • [Remarks] プレスリリース「ミトコンドリアから細胞核への逆行性シグナリングと標的遺伝子の解明」

    • URL

      https://www.kumamoto-u.ac.jp/whatsnew/seimei-sentankenkyu/20220913

    • Related Report
      2022 Annual Research Report
  • [Remarks] プレスリリース「白血病の代謝の個性を生み出す仕組みを解明」

    • URL

      https://www.kumamoto-u.ac.jp/whatsnew/seimei-sentankenkyu/20210507

    • Related Report
      2021 Annual Research Report
  • [Remarks] ニュース:熊本医学会奨励賞受賞

    • URL

      http://www.imeg.kumamoto-u.ac.jp/hino2021mar/

    • Related Report
      2020 Annual Research Report

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Published: 2020-04-28   Modified: 2024-01-30  

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