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Development of novel transfection system using DNA gel

Research Project

Project/Area Number 20J11059
Research Category

Grant-in-Aid for JSPS Fellows

Allocation TypeSingle-year Grants
Section国内
Review Section Basic Section 62010:Life, health and medical informatics-related
Research InstitutionTokyo Institute of Technology

Principal Investigator

MASUKAWA Marcos  東京工業大学, 情報理工学院, 特別研究員(DC2)

Project Period (FY) 2020-04-24 – 2022-03-31
Project Status Completed (Fiscal Year 2021)
Budget Amount *help
¥1,700,000 (Direct Cost: ¥1,700,000)
Fiscal Year 2021: ¥800,000 (Direct Cost: ¥800,000)
Fiscal Year 2020: ¥900,000 (Direct Cost: ¥900,000)
KeywordsDNA origami / colloidosome / self-assembly / aqueous two-phase system / aqueous-aqueous emulsion / DNA hydrogel / purification / monodisperse / microfluidic
Outline of Research at the Start

DNA and proteins can be inserted into the cells to modify their metabolism and genetic material. This process is called transfection and it is a key technique needed in gene editing, a prospective cure for degenerative diseases. To increase the functionality of transfected structures, we are developing a DNA hydrogel whose biological function can be activated by a chemical signal. Inside the cells, these structures can perform as molecular computers, processing signals and producing outputs within the cell. These cell hybrids will lead to novel diagnostics and treatments.

Outline of Annual Research Achievements

In recent research, the interaction between self-assembled DNA structures and liquid-liquid phase-separated systems composed of polymers was investigated. It was observed that DNA structures can be selectively taken up by these compartments, leading to self-assembly that mimics artificial cells and the interaction of nucleic acids and organelles. Based on these findings, I developed a method for purifying self-assembled DNA structures and created a new category of colloidossomes based on the accumulation of DNA origami at the interface of droplets. This enabled the creation of colloidosomes that can self-organise into cellular like structures. In the future, I will explore the possibility of translocating nucleic through membranes of DNA coloidosomes, which might find application in DNA sequencing technology and on synthetic cell models for the transport of nucleic acids thourgh membranes.

Research Progress Status

令和3年度が最終年度であるため、記入しない。

Strategy for Future Research Activity

令和3年度が最終年度であるため、記入しない。

Report

(2 results)
  • 2021 Annual Research Report
  • 2020 Annual Research Report
  • Research Products

    (10 results)

All 2021 2020

All Journal Article (2 results) (of which Int'l Joint Research: 2 results,  Peer Reviewed: 2 results,  Open Access: 1 results) Presentation (8 results)

  • [Journal Article] “Aqueous triple-phase system in microwell array for generating uniform-sized DNA hydrogel particles”2021

    • Author(s)
      Marcos Kunihiro Masukawa, Yukiko Okuda, *Masahiro Takinoue
    • Journal Title

      Frontiers in Genetics

      Volume: Vol.12 Pages: 705022-705022

    • DOI

      10.3389/fgene.2021.705022

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Assembly and purication of DNA structures in aqueous-aqueous two-phase emulsion2021

    • Author(s)
      Marcos Masukawa, Mayumi Chano, Yukiko Okuda, Fujio Yu, Yusuke Sato, Kanta Tsumoto, Kenichi Yoshikawa, Masahiro Takinoue
    • Journal Title

      MicroTAS 2021

      Volume: na

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Presentation] DNA-polymer emulsions: self-assembly and purification of DNA structures2021

    • Author(s)
      Marcos Masukawa, Fujio Yu, Yusuke Sato, Kanta Tsumoto, Kenichi Yoshikawa, Masahiro Takinoue
    • Organizer
      The 59th Annual Meeting of the Biophysical Society of Japan
    • Related Report
      2021 Annual Research Report
  • [Presentation] Purification of DNA nano/microstructures by aqueous-aqueous two-phase system fractionation2021

    • Author(s)
      Marcos Masukawa, Fujio Yu , Yusuke Sato , Kanta Tsumoto, Kenichi Yoshikawa, Masahiro Takinoue
    • Organizer
      Cheminas 43
    • Related Report
      2021 Annual Research Report
  • [Presentation] Purification of DNA nano/microstructures by aqueous two-phase system2021

    • Author(s)
      Marcos Masukawa , Fujio Yu, Yusuke Sato, Kanta Tsumoto, Kenichi Yoshikawa , Masahiro Takinoue
    • Organizer
      27th International Conference on DNA Computing and Molecular Programming
    • Related Report
      2021 Annual Research Report
  • [Presentation] Large scale simulation of DNA hydrogels2020

    • Author(s)
      Marcos Masukawa, Masahiro Takinoue
    • Organizer
      58th Annual Meeting of the Biophyisical Society of Japan
    • Related Report
      2020 Annual Research Report
  • [Presentation] Purification of DNA origami using aqueous- aqueous emulsion2020

    • Author(s)
      Marcos Masukawa, Kanta Tsumoto, Kenichi Yoshikawa, Masahiro Takinoue
    • Organizer
      第 4 回分子ロボティクス年次大会
    • Related Report
      2020 Annual Research Report
  • [Presentation] Purification and room temperature folding of DNA origami2020

    • Author(s)
      Marcos Masukawa, Kanta Tsumoto, Kenichi Yoshikawa, Masahiro Takinoue
    • Organizer
      細胞を創る研究会 13.0
    • Related Report
      2020 Annual Research Report
  • [Presentation] Stochastic simulation of DNA hydrogel thermal gelation2020

    • Author(s)
      Marcos Masukawa,Masahiro Takinoue
    • Organizer
      化学とマイクロ・ナノシステム第 43 回研究会
    • Related Report
      2020 Annual Research Report
  • [Presentation] DNA structures inside aqueous-aqueous emulsions - assembly, purification and folding2020

    • Author(s)
      Marcos Masukawa, Masahiro Takinoue
    • Organizer
      第 7 回サイボウニクス研究会
    • Related Report
      2020 Annual Research Report

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Published: 2020-07-07   Modified: 2024-03-26  

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