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Electron and NMR nano-crystallography for pharmaceutical formulation

Research Project

Project/Area Number 20K05483
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Review Section Basic Section 33010:Structural organic chemistry and physical organic chemistry-related
Research InstitutionInstitute of Physical and Chemical Research

Principal Investigator

Nishiyama Yusuke  国立研究開発法人理化学研究所, 科技ハブ産連本部, ユニットリーダー (20373342)

Project Period (FY) 2020-04-01 – 2023-03-31
Project Status Completed (Fiscal Year 2022)
Budget Amount *help
¥4,290,000 (Direct Cost: ¥3,300,000、Indirect Cost: ¥990,000)
Fiscal Year 2022: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2021: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2020: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Keywords3D電子回折 / 固体NMR / 結晶構造 / API / 結晶多形 / microED / 水素結合 / 原子間距離 / 3D ED / NMR crystallography / 微結晶 / 製剤 / 電子回折 / 低分子医薬品
Outline of Research at the Start

本課題にて、錠剤や散剤といった製剤に含まれる医薬品有効成分(API: active pharmaceutical ingredient)の微結晶から、直接精密な水素位置を含めた結晶構造を解明する。これにより、未知の結晶形や共結晶を検出・同定する手法を確立する。さらに水素位置から水素結合構造が明らかになり、塩・共結晶が同定される。
構造決定には電子回折(microED)と固体NMRを用いる。APIのみに特異的に含まれる元素を用い電子顕微鏡像でAPIを同定する手法および、その結晶粒からのNMR信号を選択的に観測する手法を開発する。

Outline of Final Research Achievements

We have developed a novel method to determine crystalline structures of API in pharmaceuticals without any prior information/assumption. 3D electron diffraction (ED) or microED solves the crystalline structure, while solid-state NMR gives detailed local structures. First, we have developed the method to selectively observe solid-state NMR signals of API in pharmaceutical forms. Then, we have developed the methods to determine internuclear distances between 1H and X precisely. By combining these methods, we successfully solve the crystalline structure including hydrogen positions. In addition, the methods are applied to pharmaceutical (quinine) samples and further amorphous materials.

Academic Significance and Societal Importance of the Research Achievements

日常の投薬に必須となる低分子医薬品の品質管理において、製剤から直接結晶構造を決定することは必須の技術である。しかしながら、従来法は粉末X線や13C CPMAS固体NMR法を用いたfinger printing法(事前に得たスペクトルとの比較)であり、直接構造決定はできなかった。本課題により、事前にスペクトルや構造を得ることなく、製剤から直接結晶構造の決定が可能となった。これにより研究開発の現場から品質管理に至るまで幅広い製薬現場で、また製薬以外の物質化学の分野での活用が期待される。

Report

(4 results)
  • 2022 Annual Research Report   Final Research Report ( PDF )
  • 2021 Research-status Report
  • 2020 Research-status Report
  • Research Products

    (62 results)

All 2023 2022 2021 2020 Other

All Int'l Joint Research (14 results) Journal Article (21 results) (of which Int'l Joint Research: 16 results,  Peer Reviewed: 21 results,  Open Access: 4 results) Presentation (27 results) (of which Int'l Joint Research: 17 results,  Invited: 20 results)

  • [Int'l Joint Research] TIFR/IISER Kolkata/IIT Ropar(インド)

    • Related Report
      2022 Annual Research Report
  • [Int'l Joint Research] AMES lab/University of Michigan/Merck(米国)

    • Related Report
      2022 Annual Research Report
  • [Int'l Joint Research] University of Lille(フランス)

    • Related Report
      2022 Annual Research Report
  • [Int'l Joint Research] South China University of Technology(中国)

    • Related Report
      2022 Annual Research Report
  • [Int'l Joint Research] University of Warwick(英国)

    • Related Report
      2022 Annual Research Report
  • [Int'l Joint Research] TIFR Hyderabad(インド)

    • Related Report
      2021 Research-status Report
  • [Int'l Joint Research] IT Ropar(インド)

    • Related Report
      2021 Research-status Report
  • [Int'l Joint Research] Iowa State University(米国)

    • Related Report
      2021 Research-status Report
  • [Int'l Joint Research] University of Bordeaux(フランス)

    • Related Report
      2021 Research-status Report
  • [Int'l Joint Research] South China University of Technology(中国)

    • Related Report
      2021 Research-status Report
  • [Int'l Joint Research] Tata Institute of Fundamental Research(インド)

    • Related Report
      2020 Research-status Report
  • [Int'l Joint Research] ETH Zurich(スイス)

    • Related Report
      2020 Research-status Report
  • [Int'l Joint Research] South China University of Technology(中国)

    • Related Report
      2020 Research-status Report
  • [Int'l Joint Research] National High Magnetic Field Laboratory(米国)

    • Related Report
      2020 Research-status Report
  • [Journal Article] Structural and Morphological Transformations of Covalent Organic Nanotubes2023

    • Author(s)
      Koner Kalipada、Karak Suvendu、Ogaeri Yutaro、Nishiyama Yusuke、Banerjee Rahul
    • Journal Title

      Angewandte Chemie International Edition

      Volume: 62 Issue: 20

    • DOI

      10.1002/anie.202300652

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] 3D electron diffraction and NMR crystallography2022

    • Author(s)
      西山 裕介
    • Journal Title

      Oyo Buturi

      Volume: 91 Issue: 2 Pages: 82-85

    • DOI

      10.11470/oubutsu.91.2_82

    • NAID

      130008149723

    • ISSN
      0369-8009, 2188-2290
    • Year and Date
      2022-02-01
    • Related Report
      2022 Annual Research Report 2021 Research-status Report
    • Peer Reviewed
  • [Journal Article] Ultrafast Magic Angle Spinning Solid-State NMR Spectroscopy: Advances in Methodology and Applications2022

    • Author(s)
      Nishiyama Yusuke、Hou Guangjin、Agarwal Vipin、Su Yongchao、Ramamoorthy Ayyalusamy
    • Journal Title

      Chemical Reviews

      Volume: 123 Issue: 3 Pages: 918-988

    • DOI

      10.1021/acs.chemrev.2c00197

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] NMR Crystallographic Approach to Study the Variation of the Dynamics of Quinine and Its Quasienantiomer Quinidine2022

    • Author(s)
      Lodhi Lekhan、Yadav Jai Prakash、Yamazaki Toshio、Duong Nghia Tuan、Poojary Srinivasa L.、Dey Krishna Kishor、Nishiyama Yusuke、Ghosh Manasi
    • Journal Title

      The Journal of Physical Chemistry C

      Volume: 126 Issue: 40 Pages: 17291-17305

    • DOI

      10.1021/acs.jpcc.2c04470

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Making Polyisoprene Self‐Healable through Microstructure Regulation by Rare‐Earth Catalysts2022

    • Author(s)
      Wang Haobing、Yang Yang、Nishiura Masayoshi、Hong You‐lee、Nishiyama Yusuke、Higaki Yuji、Hou Zhaomin
    • Journal Title

      Angewandte Chemie International Edition

      Volume: 61 Issue: 42

    • DOI

      10.1002/anie.202210023

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Combining heteronuclear correlation NMR with spin-diffusion to detect relayed Cl?H?H and N?H?H proximities in molecular solids2022

    • Author(s)
      Raval Parth、Tr?bosc Julien、Pawlak Tomasz、Nishiyama Yusuke、Brown Steven P.、Manjunatha Reddy G.N.
    • Journal Title

      Solid State Nuclear Magnetic Resonance

      Volume: 120 Pages: 101808-101808

    • DOI

      10.1016/j.ssnmr.2022.101808

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Practical guides for 1H detected solid-state NMR under fast MAS for small molecules2022

    • Author(s)
      Nishiyama Yusuke、Duong Nghia Tuan
    • Journal Title

      Journal of Magnetic Resonance Open

      Volume: 10-11 Pages: 100062-100062

    • DOI

      10.1016/j.jmro.2022.100062

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Detection of remote proton-nitrogen correlations by 1H-detected 14N overtone solid-state NMR at fast MAS2022

    • Author(s)
      Duong Nghia Tuan、Nishiyama Yusuke
    • Journal Title

      Physical Chemistry Chemical Physics

      Volume: 24 Issue: 18 Pages: 10717-10726

    • DOI

      10.1039/d2cp00155a

    • Related Report
      2021 Research-status Report
    • Peer Reviewed
  • [Journal Article] Separating an overlapped 1H peak and identifying its 1H-1H correlations with the use of single-channel 1H solid-state NMR at fast MAS2022

    • Author(s)
      Duong Nghia Tuan、Agarwal Vipin、Nishiyama Yusuke
    • Journal Title

      Solid State Nuclear Magnetic Resonance

      Volume: 117 Pages: 101774-101774

    • DOI

      10.1016/j.ssnmr.2022.101774

    • Related Report
      2021 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Proton-detected 15N-1H dipolar coupling/1H chemical shift correlation experiment for the measurement of NH distances in biological solids under fast MAS solid-state NMR2022

    • Author(s)
      Nehra Ekta、Sehrawat Neelam、Kobayashi Takeshi、Nishiyama Yusuke、Pandey Manoj Kumar
    • Journal Title

      Journal of Magnetic Resonance Open

      Volume: 10-11 Pages: 100028-100028

    • DOI

      10.1016/j.jmro.2021.100028

    • Related Report
      2021 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Protein resonance assignment by solid-state NMR based on 1H-detected 13C double-quantum spectroscopy at fast MAS2021

    • Author(s)
      Lends Alons、Berbon Melanie、Habenstein Birgit、Nishiyama Yusuke、Loquet Antoine
    • Journal Title

      Journal of Biomolecular NMR

      Volume: 75 Issue: 10-12 Pages: 417-427

    • DOI

      10.1007/s10858-021-00386-6

    • Related Report
      2021 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Proton triple-quantum solid-state NMR spectroscopy at slow MAS ~10 kHz2021

    • Author(s)
      Zhang Rongchun、Agarwal Vipin、Nishiyama Yusuke
    • Journal Title

      Journal of Magnetic Resonance Open

      Volume: 8-9 Pages: 100020-100020

    • DOI

      10.1016/j.jmro.2021.100020

    • Related Report
      2021 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Structure Solution of Nano-Crystalline Small Molecules Using MicroED and Solid-State NMR Dipolar-Based Experiments2021

    • Author(s)
      Duong Nghia Tuan、Aoyama Yoshitaka、Kawamoto Katsumi、Yamazaki Toshio、Nishiyama Yusuke
    • Journal Title

      Molecules

      Volume: 26 Issue: 15 Pages: 4652-4652

    • DOI

      10.3390/molecules26154652

    • Related Report
      2021 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Determination of the chemical shift tensor anisotropy and asymmetry of strongly dipolar coupled protons under fast MAS2021

    • Author(s)
      Kobayashi Takeshi、Perras Frederic A.、Nishiyama Yusuke
    • Journal Title

      Solid State Nuclear Magnetic Resonance

      Volume: 114 Pages: 101743-101743

    • DOI

      10.1016/j.ssnmr.2021.101743

    • Related Report
      2021 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Efficient symmetry-based γ-encoded DQ recoupling sequences for suppression of t1-noise in solid-state NMR spectroscopy at fast MAS2021

    • Author(s)
      Nishiyama Yusuke、Agarwal Vipin、Zhang Rongchun
    • Journal Title

      Solid State Nuclear Magnetic Resonance

      Volume: 114 Pages: 101734-101734

    • DOI

      10.1016/j.ssnmr.2021.101734

    • Related Report
      2021 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Selective 1H-1H recoupling via symmetry sequences in fully protonated samples at fast magic angle spinning2021

    • Author(s)
      Potnuru Lokeswara Rao、Duong Nghia Tuan、Sasank Budaraju、Raran-Kurussi Sreejith、Nishiyama Yusuke、Agarwal Vipin
    • Journal Title

      Journal of Magnetic Resonance

      Volume: 328 Pages: 107004-107004

    • DOI

      10.1016/j.jmr.2021.107004

    • Related Report
      2021 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] α‐Cyclodextrin Encapsulation of Bicyclo[1.1.1]pentane Derivatives: A Storable Feedstock for Preparation of [1.1.1]Propellane2021

    • Author(s)
      Matsunaga Tadafumi、Kanazawa Junichiro、Ichikawa Tomohiro、Harada Mei、Nishiyama Yusuke、Duong Nghia Tuan、Matsumoto Takashi、Miyamoto Kazunori、Uchiyama Masanobu
    • Journal Title

      Angewandte Chemie International Edition

      Volume: 60 Issue: 5 Pages: 2578-2582

    • DOI

      10.1002/anie.202014997

    • Related Report
      2020 Research-status Report
    • Peer Reviewed
  • [Journal Article] Selective 1H-14N Distance Measurements by 14N Overtone Solid-State NMR Spectroscopy at Fast MAS2021

    • Author(s)
      Duong Nghia Tuan、Gan Zhehong、Nishiyama Yusuke
    • Journal Title

      Frontiers in Molecular Biosciences

      Volume: 8 Pages: 645347-645347

    • DOI

      10.3389/fmolb.2021.645347

    • Related Report
      2020 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] t1-Noise Suppression by γ-Free Recoupling Sequences in Solid-State NMR for Structural Characterization of Fully Protonated Molecules at Fast MAS2020

    • Author(s)
      Nishiyama Yusuke、Agarwal Vipin、Zhang Rongchun
    • Journal Title

      The Journal of Physical Chemistry C

      Volume: 124 Issue: 48 Pages: 26332-26343

    • DOI

      10.1021/acs.jpcc.0c08828

    • Related Report
      2020 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Accuracy of 1H-1H distances measured using frequency selective recoupling and fast magic-angle spinning2020

    • Author(s)
      Potnuru Lokeswara Rao、Duong Nghia Tuan、Ahlawat Sahil、Raran-Kurussi Sreejith、Ernst Matthias、Nishiyama Yusuke、Agarwal Vipin
    • Journal Title

      The Journal of Chemical Physics

      Volume: 153 Issue: 8 Pages: 084202-084202

    • DOI

      10.1063/5.0019717

    • Related Report
      2020 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Can proton-proton recoupling in fully protonated solids provide quantitative, selective and efficient polarization transfer?2020

    • Author(s)
      Duong Nghia Tuan、Raran-Kurussi Sreejith、Nishiyama Yusuke、Agarwal Vipin
    • Journal Title

      Journal of Magnetic Resonance

      Volume: 317 Pages: 106777-106777

    • DOI

      10.1016/j.jmr.2020.106777

    • Related Report
      2020 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Presentation] Internuclear distance measurements between 1H and 14N in rigid solids2023

    • Author(s)
      Yusuke Nishiyama
    • Organizer
      3rd India-Japan NMR meeting
    • Related Report
      2022 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 14N NMRにおける磁場依存性: 高磁場の方が有利か?2022

    • Author(s)
      魚返祐太朗,西山裕介
    • Organizer
      NMR討論会
    • Related Report
      2022 Annual Research Report
  • [Presentation] Correlation and distance measurements between 1H and 14N using 14N overtone NMR spectroscopy2022

    • Author(s)
      Yusuke Nishiyama
    • Organizer
      NMR討論会
    • Related Report
      2022 Annual Research Report
  • [Presentation] Correlation and distance measurements between 1H and 14N using 14N overtone NMR spectroscopy2022

    • Author(s)
      Nghia Tuan Duong, Zhehong Gan, Yusuke Nishiyama
    • Organizer
      Alpine Conference on Magnetic Resonance in Solids
    • Related Report
      2022 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Correlation and distance measurements between 1H and 14N using 14N overtone NMR spectroscopy2022

    • Author(s)
      Yusuke Nishiyama
    • Organizer
      Rocky Mountain Conference on Chemistry
    • Related Report
      2022 Annual Research Report
    • Int'l Joint Research
  • [Presentation] coherence pathway selection: 位相廻しの決め方2021

    • Author(s)
      西山裕介
    • Organizer
      第69回 固体NMR・材料フォーラム
    • Related Report
      2021 Research-status Report
    • Invited
  • [Presentation] microED および固体 NMR を用いたマイクロ結晶の構造解析2021

    • Author(s)
      西山裕介
    • Organizer
      2021年度前期(春季)有機合成化学講習会
    • Related Report
      2021 Research-status Report
    • Invited
  • [Presentation] Quantitative Distance Measurements between 1H and X by Fast MAS Solid-State NMR2021

    • Author(s)
      Yusuke Nishiyama
    • Organizer
      ISMAR-APNMR-NMRSJ-SEST2021
    • Related Report
      2021 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] NMR crystallography with microED2021

    • Author(s)
      Yusuke Nishiyama
    • Organizer
      IUCr 2021
    • Related Report
      2021 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] NMR crystallography with microED2021

    • Author(s)
      Yusuke Nishiyama
    • Organizer
      錯体学会
    • Related Report
      2021 Research-status Report
    • Invited
  • [Presentation] Quantitative Distance Measurements between 1H and Xby Fast MAS Solid-State NMR2021

    • Author(s)
      Yusuke Nishiyama
    • Organizer
      Frontiers of NMR and MRI
    • Related Report
      2021 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] NMR nano-crystallography with microED2021

    • Author(s)
      Yusuke Nishiyama
    • Organizer
      The 4th Workshop of the Reaction Infography (R-ing) Unit
    • Related Report
      2021 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] NMR 結晶学: microED 、固体 NMR 、計算科学の融合2021

    • Author(s)
      西山裕介
    • Organizer
      理研シンポジウム:計算で物事を理解する予測する
    • Related Report
      2021 Research-status Report
    • Invited
  • [Presentation] microEDおよび固体NMRをもちいた微結晶構造解析2021

    • Author(s)
      西山裕介
    • Organizer
      東海コンファレンス2021 in 愛知
    • Related Report
      2021 Research-status Report
    • Invited
  • [Presentation] Locating hydroen atoms at very accurate positions by solid-state NMR and microED2021

    • Author(s)
      Yusuke Nishiyama
    • Organizer
      Pacifichem 2021
    • Related Report
      2021 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] Homonuclear and heteronuclear correlationsin fast MAS solid-state NMR2021

    • Author(s)
      Yusuke Nishiyama
    • Organizer
      NMRS2022
    • Related Report
      2021 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] microED: 3D 電子回折を用いた微小結晶の構造解析セミナー~電子回折および固体NMR 法を活用した新しい分析手法の紹介~2021

    • Author(s)
      西山裕介
    • Organizer
      総合技術部 分析・評価・観測群 Web セミナー
    • Related Report
      2020 Research-status Report
    • Invited
  • [Presentation] MicroEDおよび固体NMRを用いた低分子医薬品の構造解析2021

    • Author(s)
      西山裕介
    • Organizer
      日本薬剤学会物性FGセミナー 2020
    • Related Report
      2020 Research-status Report
    • Invited
  • [Presentation] 水素原子を見る: microED + solid-state NMR Accurate determination of hydrogen position in electron and NMR crystallography2020

    • Author(s)
      西山裕介
    • Organizer
      日本顕微鏡学会 第76回学術講演会 (誌上開催)
    • Related Report
      2020 Research-status Report
  • [Presentation] Practical aspects of fast MAS solid-state NMR2020

    • Author(s)
      Yusuke Nishiyama
    • Organizer
      global NMR discussion meeting
    • Related Report
      2020 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] Electron and NMR nano-crystallography2020

    • Author(s)
      Yusuke Nishiyama
    • Organizer
      The Korean Society of Analytical Science
    • Related Report
      2020 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] Electron and NMR crystallography of small pharmaceutical compounds2020

    • Author(s)
      Yusuke Nishiyama
    • Organizer
      The ACS Fall 2020 Virtual Meeting
    • Related Report
      2020 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] Probing local 1H spin network through 1H SQ, DQ and TQ coherences2020

    • Author(s)
      Yusuke Nishiyama
    • Organizer
      Intercontinental NMR Conference on Methods and Applications
    • Related Report
      2020 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] Probing local 1H spin network through 1H SQ, DQ and TQ coherences2020

    • Author(s)
      Yusuke Nishiyama
    • Organizer
      第59回NMR討論会
    • Related Report
      2020 Research-status Report
    • Int'l Joint Research
  • [Presentation] New techniques and application of fast MAS solid-state NMR2020

    • Author(s)
      Yusuke Nishiyama
    • Organizer
      KBSI NMR workshop
    • Related Report
      2020 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] Electron and NMR crystallography for small pharmaceutical molecules using microED and solid-state NMR2020

    • Author(s)
      Yusuke Nishiyama
    • Organizer
      RSC Tokyo International Conference 2020
    • Related Report
      2020 Research-status Report
    • Int'l Joint Research
  • [Presentation] Structure solution of small pharmaceutical compounds2020

    • Author(s)
      Yusuke Nishiyama
    • Organizer
      BRSG webinar
    • Related Report
      2020 Research-status Report
    • Int'l Joint Research / Invited

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Published: 2020-04-28   Modified: 2024-01-30  

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