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Heterologous production of Lasso peptides based on bacterial genomic information

Research Project

Project/Area Number 20K05848
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Review Section Basic Section 38040:Bioorganic chemistry-related
Research InstitutionShizuoka University

Principal Investigator

Kodani Shinya  静岡大学, 農学部, 教授 (20510621)

Co-Investigator(Kenkyū-buntansha) 中川 博之  国立研究開発法人農業・食品産業技術総合研究機構, 高度分析研究センター, 上級研究員 (30308192)
Project Period (FY) 2020-04-01 – 2023-03-31
Project Status Completed (Fiscal Year 2022)
Budget Amount *help
¥4,290,000 (Direct Cost: ¥3,300,000、Indirect Cost: ¥990,000)
Fiscal Year 2022: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2021: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2020: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Keywordsペプチド / 異宿主生産 / NMR / 環状ペプチド / ラッソペプチド / ゲノムマイニング
Outline of Research at the Start

環状ペプチドは、代謝されにくく、中分子として、高分子と低分子の中間の性質を有することから抗体医薬等への応用が期待されている。本研究において、バクテリアのゲノムを用いて、有用な新規環状ペプチドを生産することを目的として研究を行う。最終的に本研究で得られたペプチドの生理活性を明らかにし、医薬への応用を検討する。

Outline of Final Research Achievements

Middle-molecular-weight peptides are attracting attention for their properties that combine the characteristics of antibodies and low-molecular-weight peptides, and are expected to be applied to medicine. Lasso peptides are cyclic peptides that are attracting attention as targets for drug discovery due to the protease resistance and bioactivity. In this research project, we succeeded in producing several peptides by heterologous production. We established a heterologous production system using Sphingomonas as a host. Furthermore, we have successfully produced a novel peptide koreansin in a different host using the system. The chemical structure was elucidated using NMR and MS spectra, and NOE experiments were performed to clarify the three-dimensional structure.

Academic Significance and Societal Importance of the Research Achievements

中分子ペプチドは抗体と低分子の特徴を併せ持つ特性が注目され、医薬への応用が期待されている。特に発酵生産でこの中分子ペプチドを生産することはこれまで難しかった。本研究において、代謝されにくい環状ペプチドの発酵生産法が確立できた。さらに遺伝子組み換えで、配列の異なるペプチドを生合成することも明らかとなった。NMRを用いた化学分析の結果、得られたペプチドは構造的にも非常に安定な三次元構造を有していることを確認することが出来た。今後、本研究で得られた成果は、ペプチド医薬の創出研究に汎用的に用いることが期待できる。

Report

(4 results)
  • 2022 Annual Research Report   Final Research Report ( PDF )
  • 2021 Research-status Report
  • 2020 Research-status Report
  • Research Products

    (14 results)

All 2022 2021 2020 Other

All Journal Article (7 results) (of which Peer Reviewed: 7 results) Presentation (5 results) (of which Int'l Joint Research: 1 results,  Invited: 1 results) Remarks (2 results)

  • [Journal Article] Heterologous production of new lanthipeptides hazakensins A and B using a cryptic gene cluster of the thermophilic bacterium Thermosporothrix hazakensis2022

    • Author(s)
      Kaweewan Issara、Ijichi Shinta、Nakagawa Hiroyuki、Kodani Shinya
    • Journal Title

      World Journal of Microbiology and Biotechnology

      Volume: 39 Issue: 1 Pages: 30-30

    • DOI

      10.1007/s11274-022-03463-6

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Heterologous expression of a cryptic gene cluster from a marine proteobacterium <i>Thalassomonas actiniarum</i> affords new lanthipeptides thalassomonasins A and B2022

    • Author(s)
      Thetsana Chanaphat、Ijichi Shinta、Kaweewan Issara、Nakagawa Hiroyuki、Kodani Shinya
    • Journal Title

      Journal of Applied Microbiology

      Volume: 132 Issue: 5 Pages: 3629-3639

    • DOI

      10.1111/jam.15491

    • Related Report
      2021 Research-status Report
    • Peer Reviewed
  • [Journal Article] Heterologous production of new protease inhibitory peptide marinostatin E2021

    • Author(s)
      Unno Kohta、Nakagawa Hiroyuki、Kodani Shinya
    • Journal Title

      Bioscience, Biotechnology, and Biochemistry

      Volume: 85 Issue: 1 Pages: 97-102

    • DOI

      10.1093/bbb/zbaa011

    • Related Report
      2020 Research-status Report
    • Peer Reviewed
  • [Journal Article] Heterologous production of new lasso peptide koreensin based on genome mining2020

    • Author(s)
      Fuwa Hiroki、Hemmi Hikaru、Kaweewan Issara、Kozaki Ikko、Honda Hiroyuki、Kodani Shinya
    • Journal Title

      The Journal of Antibiotics

      Volume: 74 Issue: 1 Pages: 42-50

    • DOI

      10.1038/s41429-020-00363-5

    • NAID

      120006890000

    • Related Report
      2020 Research-status Report
    • Peer Reviewed
  • [Journal Article] How to harness biosynthetic gene clusters of lasso peptides2020

    • Author(s)
      Kodani Shinya、Unno Kohta
    • Journal Title

      Journal of Industrial Microbiology and Biotechnology

      Volume: 47 Issue: 9-10 Pages: 703-714

    • DOI

      10.1007/s10295-020-02292-6

    • NAID

      120006880182

    • Related Report
      2020 Research-status Report
    • Peer Reviewed
  • [Journal Article] Isolation and structure determination of new linear azole-containing peptides spongiicolazolicins A and B from Streptomyces sp. CWH032020

    • Author(s)
      Suzuki Mana、Komaki Hisayuki、Kaweewan Issara、Dohra Hideo、Hemmi Hikaru、Nakagawa Hiroyuki、Yamamura Hideki、Hayakawa Masayuki、Kodani Shinya
    • Journal Title

      Applied Microbiology and Biotechnology

      Volume: 105 Issue: 1 Pages: 93-104

    • DOI

      10.1007/s00253-020-11016-w

    • NAID

      120006901647

    • Related Report
      2020 Research-status Report
    • Peer Reviewed
  • [Journal Article] Heterologous expression of a cryptic gene cluster from Grimontia marina affords a novel tricyclic peptide grimoviridin2020

    • Author(s)
      Unno Kohta、Kaweewan Issara、Nakagawa Hiroyuki、Kodani Shinya
    • Journal Title

      Applied Microbiology and Biotechnology

      Volume: 104 Issue: 12 Pages: 5293-5302

    • DOI

      10.1007/s00253-020-10605-z

    • NAID

      120006890001

    • Related Report
      2020 Research-status Report
    • Peer Reviewed
  • [Presentation] 希少放線菌Sinosporangium siamenseの新規ランチペプチドの異宿主生産2022

    • Author(s)
      齋藤 慧太 , 中川 博之, 小谷 真也
    • Organizer
      第36回(2022年度)日本放線菌学会大会
    • Related Report
      2022 Annual Research Report
  • [Presentation] Heterologous production of a novel bicyclic peptide prunipeptin using a cryptic biosynthetic gene cluster from Streptomyces prunicolor2021

    • Author(s)
      Shinya Kodani
    • Organizer
      Pacifichem2021 symposium (RiPP Natural Products: Biosynthesis, Function, and Engineering)
    • Related Report
      2021 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] 放線菌Streptomyces sp. 519Sから得られたlanthidinクラスに属する新規ペプチドの単離と構造決定2021

    • Author(s)
      荒川 美彩、道羅 英夫、小谷 真也
    • Organizer
      日本農芸化学会2021年度大会
    • Related Report
      2020 Research-status Report
  • [Presentation] Bacillus amyloliquefaciensのランチペプチド生合成遺伝子の発現実験2021

    • Author(s)
      黒川 紗緒里、小谷 真也
    • Organizer
      日本農芸化学会2021年度大会
    • Related Report
      2020 Research-status Report
  • [Presentation] 新規三環性ペプチドgrimoviridinの異宿主生産2020

    • Author(s)
      海野航太、Issara Kaweewan、中川博之、小谷真也
    • Organizer
      62回天然有機化合物討論会
    • Related Report
      2020 Research-status Report
  • [Remarks] 静岡大学農学部応用微生物学(小谷)研究室ホームページ

    • URL

      https://wwp.shizuoka.ac.jp/kodani/

    • Related Report
      2021 Research-status Report
  • [Remarks] 静岡大学小谷研究室ホームページ

    • URL

      https://wwp.shizuoka.ac.jp/kodani/

    • Related Report
      2020 Research-status Report

URL: 

Published: 2020-04-28   Modified: 2024-01-30  

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