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Understanding the mechanisms by which Ctf4 protein suppresses repair of DNA double-strand breaks by homologous recombination

Research Project

Project/Area Number 20K06597
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Review Section Basic Section 43050:Genome biology-related
Research InstitutionNational Institute of Genetics (2023)
The University of Tokyo (2020-2022)

Principal Investigator

Mariko Sasaki  国立遺伝学研究所, 新分野創造センター, 准教授 (50722013)

Project Period (FY) 2020-04-01 – 2024-03-31
Project Status Completed (Fiscal Year 2023)
Budget Amount *help
¥4,290,000 (Direct Cost: ¥3,300,000、Indirect Cost: ¥990,000)
Fiscal Year 2022: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
Fiscal Year 2021: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2020: ¥910,000 (Direct Cost: ¥700,000、Indirect Cost: ¥210,000)
KeywordsCtf4 / DNA複製阻害 / DNA二本鎖切断 / 相同組換え / ゲノム不安定化 / ゲノム安定性 / rDNA
Outline of Research at the Start

DNA複製は遺伝情報を正確にコピーし、娘細胞に伝達するために必須である。複製が阻害されると最も危険なDNA損傷であるDNA二本鎖切断が生じるが、その修復機構は不明であった。研究代表者は先行研究において、複製阻害時のDNA二本鎖切断は複製期以外で用いられる相同組換えに依存しない経路によって修復されること、さらに複製装置の構成因子Ctf4タンパク質が相同組換えによる修復を抑制していることを明らかにした。本研究では、Ctf4タンパク質が複製阻害時に相同組換えによるDNA二本鎖切断修復を抑制する分子機構を明らかにすることを目指す。

Outline of Final Research Achievements

In this research project, I aimed to elucidate the mechanism by which the DNA replication factor Ctf4 protein suppresses homologous recombination-mediated DSB repair, using the ribosomal RNA gene (rDNA) region of budding yeast. By performing chromatin immunoprecipitation experiments, I identified homologous recombination factors and DNA replication factors whose binding to the DSB sites is altered in Ctf4-deficient cells. Additionally, I found that the interaction between Ctf4 and Mms22 proteins is important for suppressing rDNA instability.

Academic Significance and Societal Importance of the Research Achievements

DNA二本鎖切断は、DNA複製の途中で発生することが多く、その不正確な修復はゲノム不安定化を誘導し、がんなどの様々な疾患を引き起こす原因となる。本研究では、DNA複製阻害時に生じるDNA二本鎖切断修復に関与するCtf4タンパク質の作用機構の一端を明らかにすることができた。CTF4遺伝子はヒト細胞でも保存されている。よって、本研究で得られた知見をもとに、ヒト細胞で起こるDNA二本鎖切断修復機構の解明に向けた研究に発展させることができる。

Report

(5 results)
  • 2023 Annual Research Report   Final Research Report ( PDF )
  • 2022 Research-status Report
  • 2021 Research-status Report
  • 2020 Research-status Report
  • Research Products

    (23 results)

All 2024 2023 2022 2021 2020

All Journal Article (10 results) (of which Peer Reviewed: 5 results,  Open Access: 7 results) Presentation (13 results) (of which Int'l Joint Research: 1 results,  Invited: 1 results)

  • [Journal Article] The histone chaperone CAF-1 maintains the stability of the ribosomal RNA gene cluster by suppressing end resection of replication-associated DNA double-strand breaks2024

    • Author(s)
      Futami Hajime、Sasaki Mariko、Kobayashi Takehiko
    • Journal Title

      bioRxiv

      Volume: -

    • DOI

      10.1101/2024.03.12.584701

    • Related Report
      2023 Annual Research Report
    • Open Access
  • [Journal Article] The peroxiredoxin Tsa1 extends the lifespan of budding yeast by maintaining the stability of the ribosomal RNA gene cluster2024

    • Author(s)
      Ohira Junno、Sasaki Mariko、Kobayashi Takehiko
    • Journal Title

      bioRxiv

      Volume: -

    • DOI

      10.1101/2024.03.14.585068

    • Related Report
      2023 Annual Research Report
    • Open Access
  • [Journal Article] Regulatory processes that maintain or alter ribosomal DNA stability during the repair of programmed DNA double-strand breaks2023

    • Author(s)
      Mariko Sasaki and Takehiko Kobayashi
    • Journal Title

      Genes & Genetic Systems

      Volume: 98 Issue: 3 Pages: 103-119

    • DOI

      10.1266/ggs.22-00046

    • ISSN
      1341-7568, 1880-5779
    • Year and Date
      2023-06-01
    • Related Report
      2023 Annual Research Report 2022 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Spt4 promotes cellular senescence by activating non-coding RNA transcription in ribosomal RNA gene clusters2023

    • Author(s)
      Yokoyama Masaaki、Sasaki Mariko、Kobayashi Takehiko
    • Journal Title

      Cell Reports

      Volume: 42 Issue: 1 Pages: 111944-111944

    • DOI

      10.1016/j.celrep.2022.111944

    • Related Report
      2023 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Transcription near arrested DNA replication forks triggers ribosomal DNA copy number changes2023

    • Author(s)
      Sasaki Mariko、Kobayashi Takehiko
    • Journal Title

      bioRxiv

      Volume: -

    • DOI

      10.1101/2023.12.21.572944

    • Related Report
      2023 Annual Research Report
    • Open Access
  • [Journal Article] Acidic growth conditions stabilize the ribosomal RNA gene cluster and extend lifespan through noncoding transcription repression2023

    • Author(s)
      Hasegawa Yo、Ooka Hiroyuki、Wakatsuki Tsuyoshi、Sasaki Mariko、Yamamoto Ayumi、Kobayashi Takehiko
    • Journal Title

      Genes to Cells

      Volume: 29 Issue: 2 Pages: 111-130

    • DOI

      10.1111/gtc.13089

    • Related Report
      2023 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Spt4 promotes cellular senescence by activating non-coding RNA transcription in ribosomal RNA gene clusters2023

    • Author(s)
      Masaaki Yokoyama, Mariko Sasaki, Takehiko Kobayashi
    • Journal Title

      Cell Reports

      Volume: 42 Pages: 111944-111944

    • Related Report
      2022 Research-status Report
    • Peer Reviewed
  • [Journal Article] Spt4 drives cellular senescence by activating non-coding RNA transcription in ribosomal RNA gene clusters2022

    • Author(s)
      Masaaki Yokoyama, Mariko Sasaki, Takehiko Kobayashi
    • Journal Title

      bioRxiv

      Volume: - Pages: 0-0

    • DOI

      10.1101/2022.04.22.488906

    • Related Report
      2021 Research-status Report
  • [Journal Article] The S-phase Cyclin Clb5 Promotes rDNA Stability by Maintaining Replication Initiation Efficiency in rDNA.2021

    • Author(s)
      Mayuko Goto, Mariko Sasaki, and Takehiko Kobayashi
    • Journal Title

      Molecular and Cellular Biology

      Volume: 5 Issue: 5 Pages: 1-1

    • DOI

      10.1128/mcb.00324-20

    • Related Report
      2021 Research-status Report 2020 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Gel Electrophoresis Analysis of rDNA Instability in Saccharomyces cerevisiae2021

    • Author(s)
      Mariko Sasaki, Takehiko Kobayashi
    • Journal Title

      Methods in Molecular Biology

      Volume: 2153 Pages: 403-425

    • DOI

      10.1007/978-1-0716-0644-5_28

    • ISBN
      9781071606438, 9781071606445
    • Related Report
      2021 Research-status Report 2020 Research-status Report
  • [Presentation] Nearby transcription activity impacts repair pathway choice of DSBs that are formed in response to replication fork arrest2023

    • Author(s)
      Mariko Sasaki
    • Organizer
      第96回日本生化学会大会、企画シンポジウム「DNA二重鎖切断損傷に応答するゲノム維持システム」
    • Related Report
      2023 Annual Research Report
  • [Presentation] Transcription near arrested DNA replication forks triggers rDNA copy number changes.2023

    • Author(s)
      Mariko Sasaki
    • Organizer
      The 2023 Cold Spring Harbor Asia Conference on YEAST AND LIFE SCIENCES
    • Related Report
      2023 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Understanding mechanisms underlying extrachromosomal circular DNA using budding yeast2023

    • Author(s)
      Mariko Sasaki
    • Organizer
      第82回 日本癌学会学術総会
    • Related Report
      2023 Annual Research Report
  • [Presentation] 構造特異的ヌクレアーゼRad27(FEN-1)によるrDNA安定性維持機構の解析2023

    • Author(s)
      佐々木 真理子
    • Organizer
      日本遺伝学会 第95回大会
    • Related Report
      2023 Annual Research Report
  • [Presentation] Rad27 (FEN-1)による新規の rDNA コピー数制御機構の解析2023

    • Author(s)
      佐々木 真理子
    • Organizer
      第27回DNA 複製・組換え・修復ワークショップ
    • Related Report
      2023 Annual Research Report
  • [Presentation] Interplay between transcription and DNA double-strand break repair impacts genome stability upon DNA replication fork arrest2022

    • Author(s)
      佐々木 真理子
    • Organizer
      第45回日本分子生物学会、ワークショップ「ゲノム複製研究の最前線 - Flexibility, Fidelity, Fragility」
    • Related Report
      2022 Research-status Report
    • Invited
  • [Presentation] DNA複製阻害時のDNA二本鎖切断修復と転写制御機構のインタープレイ2022

    • Author(s)
      佐々木 真理子、小林 武彦
    • Organizer
      日本遺伝学会第94回大会
    • Related Report
      2022 Research-status Report
  • [Presentation] DNA複製阻害時のDNA二本鎖切断修復によるrDNAコピー数制御機構の解明2021

    • Author(s)
      佐々木真理子
    • Organizer
      第44回日本分子生物学会、企画ワークショップ「ゲノムDNA量の変化から紐解く生物の生存戦略」
    • Related Report
      2021 Research-status Report
  • [Presentation] DNA複製阻害時のDNA二本鎖切断修復とゲノム不安定化2021

    • Author(s)
      佐々木真理子、小林武彦
    • Organizer
      第26回DNA複製・組換え・修復ワークショップ
    • Related Report
      2021 Research-status Report
  • [Presentation] DNA複製阻害時のDNA二本鎖切断修復と転写制御機構のインタープレイ2021

    • Author(s)
      佐々木真理子
    • Organizer
      日本遺伝学会第93回大会、企画ワークショップ「ゲノムDNA量の変化から紐解く生物の生存戦略」
    • Related Report
      2021 Research-status Report
  • [Presentation] S期サイクリンClb5によるゲノム安定性維持機構2021

    • Author(s)
      佐々木真理子、後藤真由子、小林武彦
    • Organizer
      酵母遺伝学フォーラム第54回研究報告回
    • Related Report
      2021 Research-status Report
  • [Presentation] DNA複製阻害時のDNA日本鎖切断修復と転写制御機構のインタープレイ2021

    • Author(s)
      佐々木 真理子
    • Organizer
      第38回染色体ワークショップ、第19回核ダイナミクス研究会
    • Related Report
      2020 Research-status Report
  • [Presentation] Mechanisms that regulate repair of DNA double-strand breaks at arrested replication forks2020

    • Author(s)
      Mariko Sasaki
    • Organizer
      International Symposium for Female Researchers in Chromatin Biology 2020
    • Related Report
      2020 Research-status Report

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Published: 2020-04-28   Modified: 2025-01-30  

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