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Genomic and epigenomic analysis of high-risk neuroblastoma and its application for the cancer genome medicine

Research Project

Project/Area Number 20K08269
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Review Section Basic Section 52050:Embryonic medicine and pediatrics-related
Research InstitutionResearch Institute for Clinical Oncology Saitama Cancer Center

Principal Investigator

Ohira Miki  地方独立行政法人埼玉県立病院機構埼玉県立がんセンター(臨床腫瘍研究所), 臨床腫瘍研究所, 主幹 (20311384)

Project Period (FY) 2020-04-01 – 2025-03-31
Project Status Completed (Fiscal Year 2024)
Budget Amount *help
¥4,420,000 (Direct Cost: ¥3,400,000、Indirect Cost: ¥1,020,000)
Fiscal Year 2022: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2021: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2020: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Keywords神経芽腫
Outline of Research at the Start

本研究では神経芽腫組織バンクを解析対象に、網羅的ゲノム・エピゲノムデータと臨床情報をメタオミックス解析し、テロメア/クロマチン維持機構関連遺伝子群に注目した腫瘍の分子的背景の異なるサブグループ毎の分子標的遺伝子の同定と解析を行う。また、日本小児がん研究グループ神経芽腫委員会が行う臨床試験の登録例のゲノム・エピゲノム解析とがん遺伝子パネル解析を行い、がんゲノム医療における精度の高い神経芽腫リスク分類システムへの適用を目指す。

Outline of Final Research Achievements

Given the highly heterogeneous clinical behavior of neuroblastoma, risk classification at diagnosis is critically important for selecting appropriate treatment strategies for each patient. In this study, we performed detailed genomic analyses of 605 neuroblastoma cases registered with the Japan Children's Cancer Group Neuroblastoma Committee. We validated currently used risk classification markers that were originally developed based on Western cohorts and re-identified combinations of markers that are strongly associated with patient prognosis. Furthermore, using tumor DNA methylation data, we constructed a prognostic prediction model based on epigenomic features through machine learning.

Academic Significance and Societal Importance of the Research Achievements

これまで欧米から提唱されている神経芽腫のリスクマーカーは欧米の症例の解析データに基づくものであり、今回日本人症例のデータで検証したことで、全体としては同等のリスク分類性能が示されたものの、超高リスク症例の分類についてはさらに再構築が必要であることが示唆された。また、エピゲノム情報に基づいた分類が神経芽腫の予後予測に有効であることも改めて示され、今後統合的な解析を進めることで、精度の高いリスク分類の構築につながると期待される。取りまとめたデータの一部は国際小児がんデータベースに共有され、世界の小児がん研究者の新たな研究に活用されている。

Report

(6 results)
  • 2024 Annual Research Report   Final Research Report ( PDF )
  • 2023 Research-status Report
  • 2022 Research-status Report
  • 2021 Research-status Report
  • 2020 Research-status Report
  • Research Products

    (26 results)

All 2024 2023 2022 2021 2020

All Journal Article (13 results) (of which Int'l Joint Research: 3 results,  Peer Reviewed: 13 results,  Open Access: 13 results) Presentation (13 results) (of which Int'l Joint Research: 3 results)

  • [Journal Article] A nationwide phase II study of delayed local treatment for children with high‐risk neuroblastoma: The Japan Children's Cancer Group Neuroblastoma Committee Trial JN‐H‐112024

    • Author(s)
      Yoneda Akihiro、Kamijo Takehiko他18名
    • Journal Title

      Pediatric Blood & Cancer

      Volume: 71 Issue: 6

    • DOI

      10.1002/pbc.30976

    • Related Report
      2024 Annual Research Report 2023 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] L3MBTL2 maintains MYCN‐amplified neuroblastoma cell proliferation through silencing NRIP3 and BRME1 genes2024

    • Author(s)
      Okada Ryu、Takenobu Hisanori、Satoh Shunpei、Sugino Ryuichi P.、Onuki Ritsuko、Haruta Masayuki、Mukae Kyosuke、Nakazawa Atsuko、Akter Jesmin、Ohira Miki、Kamijo Takehiko
    • Journal Title

      Genes to Cells

      Volume: 29 Issue: 10 Pages: 838-853

    • DOI

      10.1111/gtc.13148

    • Related Report
      2024 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Pediatric Precision Medicine at the National Cancer Center Japan: Prospective Genomic Study of Pediatric Patients with Cancer as Part of the TOP-GEAR Project2023

    • Author(s)
      Tao Kayoko、Ohira Miki、他19名
    • Journal Title

      JCO Precision Oncology

      Volume: 7 Issue: 7

    • DOI

      10.1200/po.22.00266

    • Related Report
      2023 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] ATM depletion induces proteasomal degradation of FANCD2 and sensitizes neuroblastoma cells to PARP inhibitors2023

    • Author(s)
      Parvin Sultana、Akter Jesmin、Takenobu Hisanori、Katai Yutaka、Satoh Shunpei、Okada Ryu、Haruta Masayuki、Mukae Kyosuke、Wada Tomoko、Ohira Miki、Ando Kiyohiro、Kamijo Takehiko
    • Journal Title

      BMC Cancer

      Volume: 23 Issue: 1 Pages: 1-13

    • DOI

      10.1186/s12885-023-10772-y

    • Related Report
      2023 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Development of an osteosarcoma model with <i>MYCN</i> amplification and <i>TP53</i> mutation in hiPS cell‐derived neural crest cells2023

    • Author(s)
      Mukae Kyosuke、Takenobu Hisanori、Endo Yuki、Haruta Masayuki、Shi Tianyuan、Satoh Shunpei、Ohira Miki、Funato Michinori、Toguchida Junya、Osafune Kenji、Nakahata Tatsutoshi、Kanda Hiroaki、Kamijo Takehiko
    • Journal Title

      Cancer Science

      Volume: - Issue: 5 Pages: 1898-1911

    • DOI

      10.1111/cas.15730

    • Related Report
      2023 Research-status Report 2022 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Polycomb group protein BMI1 protects neuroblastoma cells against DNA damage-induced apoptotic cell death2023

    • Author(s)
      Akita Nobuhiro、Okada Ryu、Mukae Kyosuke、Sugino Ryuichi P.、Takenobu Hisanori、Chikaraishi Koji、Ochiai Hidemasa、Yamaguchi Yohko、Ohira Miki、Koseki Haruhiko、Kamijo Takehiko
    • Journal Title

      Experimental Cell Research

      Volume: 422 Issue: 1 Pages: 113412-113412

    • DOI

      10.1016/j.yexcr.2022.113412

    • Related Report
      2022 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] The PRC2 molecule EED is a target of epigenetic therapy for neuroblastoma2022

    • Author(s)
      Shaliman Dilibaerguli、Takenobu Hisanori、Sugino Ryuichi P.、Ohira Miki、Kamijo Takehiko
    • Journal Title

      European Journal of Cell Biology

      Volume: 101 Issue: 3 Pages: 151238-151238

    • DOI

      10.1016/j.ejcb.2022.151238

    • Related Report
      2022 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Polycomb EZH1 regulates cell cycle/5‐fluorouracil sensitivity of neuroblastoma cells in concert with MYCN2022

    • Author(s)
      Shinno Yoshitaka、Takenobu Hisanori、Sugino Ryuichi P.、Endo Yuki、Okada Ryu、Haruta Masayuki、Satoh Shunpei、Mukae Kyosuke、Shaliman Dilibaerguli、Wada Tomoko、Akter Jesmin、Ando Kiyohiro、Nakazawa Atsuko、Yoshida Hideo、Ohira Miki、Hishiki Tomoro、Kamijo Takehiko
    • Journal Title

      Cancer Science

      Volume: 113 Issue: 12 Pages: 4193-4206

    • DOI

      10.1111/cas.15555

    • Related Report
      2022 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Comparative epigenomics by machine learning approach for neuroblastoma2022

    • Author(s)
      Sugino Ryuichi P.、Ohira Miki、Mansai Sayaka P.、Kamijo Takehiko
    • Journal Title

      BMC Genomics

      Volume: 23 Issue: 1 Pages: 852-852

    • DOI

      10.1186/s12864-022-09061-y

    • Related Report
      2022 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Infantile Stage M Neuroblastoma With 11q Deletion, Mimicking Stage MS2022

    • Author(s)
      Yoshimoto Suzuki Yuri、Yamanaka Junko、Miyazaki Osamu、Nozawa Kumiko、Ohira Miki、Kamijo Takehiko、Shichino Hiroyuki
    • Journal Title

      Journal of Pediatric Hematology/Oncology

      Volume: 44 Issue: 3 Pages: e779-e781

    • DOI

      10.1097/mph.0000000000002398

    • Related Report
      2021 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Loss of p53 suppresses replication stress-induced DNA damage in ATRX-deficient neuroblastoma2021

    • Author(s)
      Akter Jesmin、Katai Yutaka、Sultana Parvin、Takenobu Hisanori、Haruta Masayuki、Sugino Ryuichi P.、Mukae Kyosuke、Satoh Shunpei、Wada Tomoko、Ohira Miki、Ando Kiyohiro、Kamijo Takehiko
    • Journal Title

      Oncogenesis

      Volume: 10 Issue: 11 Pages: 1256-1256

    • DOI

      10.1038/s41389-021-00363-6

    • Related Report
      2021 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] FGFR2 loss sensitizes MYCN‐amplified neuroblastoma CHP134 cells to CHK1 inhibitor?induced apoptosis2021

    • Author(s)
      Ando Kiyohiro、Ohira Miki、Takada Ichiro、Cazares‐Ordonez Verna、Suenaga Yusuke、Nagase Hiroki、Kobayashi Shinichi、Koshinaga Tsugumichi、Kamijo Takehiko、Makishima Makoto、Wada Satoshi
    • Journal Title

      Cancer Science

      Volume: 113 Issue: 2 Pages: 587-596

    • DOI

      10.1111/cas.15205

    • Related Report
      2021 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Retrospective Analysis of INRG Clinical and Genomic Factors for 605 Neuroblastomas in Japan: A Report from the Japan Children’s Cancer Group Neuroblastoma Committee (JCCG-JNBSG)2021

    • Author(s)
      Ohira Miki、Nakamura Yohko、Takimoto Tetsuya、Nakazawa Atsuko、Hishiki Tomoro、Matsumoto Kimikazu、Shichino Hiroyuki、Iehara Tomoko、Nagase Hiroki、Fukushima Takashi、Yoneda Akihiro、Tajiri Tatsuro、Nakagawara Akira、Kamijo Takehiko
    • Journal Title

      Biomolecules

      Volume: 12 Issue: 1 Pages: 18-18

    • DOI

      10.3390/biom12010018

    • Related Report
      2021 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Presentation] JCCG-JNBSG登録605例の後方視的リスクマーカー解析とINRGデータベース構築2023

    • Author(s)
      大平美紀、中村洋子、上條岳彦、他11名
    • Organizer
      第162回小児血液腫瘍免疫懇話会
    • Related Report
      2023 Research-status Report
  • [Presentation] Genome analysis of 95 cases registered in JCCG-JNBSG JN-H-11 and JN-H-07 clinical studies for high-risk neuroblastoma2023

    • Author(s)
      大平美紀、春田雅之、菅原基樹、上條岳彦、他13名
    • Organizer
      Advances in Neuroblastoma Research 2023
    • Related Report
      2023 Research-status Report
    • Int'l Joint Research
  • [Presentation] Retrospective analysis of INRG clinical and genomic markers for 605 neuroblastomas in Japan: A report from JCCG-JNBSG2023

    • Author(s)
      大平美紀、上條岳彦 他11名
    • Organizer
      Advances in Neuroblastoma Research 2023
    • Related Report
      2023 Research-status Report
    • Int'l Joint Research
  • [Presentation] Comparative epigenomics by machine learning approach for neuroblastoma2023

    • Author(s)
      杉野隆一、大平美紀、萬斎清香、上條岳彦
    • Organizer
      第82回日本癌学会学術総会
    • Related Report
      2023 Research-status Report
  • [Presentation] 再発神経芽腫のゲノムコピー数解析2023

    • Author(s)
      大平美紀、春田雅之、上條岳彦 他12名
    • Organizer
      第82回日本癌学会学術総会
    • Related Report
      2023 Research-status Report
  • [Presentation] JCCG-JNBSG神経芽腫過去登録例の初回治療後または再発/増悪時検体と初発時検体のゲノムコピー数解析2023

    • Author(s)
      大平美紀、春田雅之、上條岳彦 他7名
    • Organizer
      第65回日本小児血液・がん学会学術集会
    • Related Report
      2023 Research-status Report
  • [Presentation] 本邦で診断された神経芽腫605例の国際リスク分類マーカーの後方視的解析2022

    • Author(s)
      大平美紀,中村洋子、瀧本哲也,中澤温子,菱木知郎,松本公一,七野浩之,家原知子、永瀬浩喜,福島敬、米田光宏、田尻達郎,中川原章,上條岳彦,JCCG JNBSG
    • Organizer
      第81回日本癌学会学術総会
    • Related Report
      2022 Research-status Report
  • [Presentation] 神経芽腫過去登録例のINRGマーカーならびにゲノムマーカーの後方視的解析(JCCG-JNBSG報告)2022

    • Author(s)
      大平美紀,瀧本哲也,中澤温子,菱木知郎,松本公一,七野浩之,家原知子、田尻達郎,中川原章,上條岳彦,JCCG JNBSG
    • Organizer
      第64回日本小児血液・がん学会学術集会
    • Related Report
      2022 Research-status Report
  • [Presentation] 高リスク神経芽腫臨床試験例における各種ゲノムマーカーの後方視的解析2021

    • Author(s)
      大平美紀、春田雅之、菅原大樹、七野浩之、菱木知郎、瀧本哲也、中澤温子、大喜多肇、東本浩子、牛島俊和、永瀬浩喜、義岡孝子、市川仁、田尻達郎、中川原章、上條岳彦
    • Organizer
      第80回日本癌学会学術総会
    • Related Report
      2021 Research-status Report
  • [Presentation] JCCG-JNBSG高リスク神経芽腫臨床試験例のゲノムマーカー解析2021

    • Author(s)
      大平美紀、春田雅之、菅原大樹、七野浩之、菱木知郎、瀧本哲也、中澤温子、大喜多肇、東本浩子、牛島俊和、永瀬浩喜、義岡孝子、市川仁、田尻達郎、中川原章、上條岳彦
    • Organizer
      第63回日本小児血液・がん学会学術集会
    • Related Report
      2021 Research-status Report
  • [Presentation] Genomic characterization of high-risk neuroblastoma by NCC Oncopanel Ped cancer panel.2020

    • Author(s)
      Ohira M, Shichino H, Kubo T, Haruta M, Takimoto T, Nakazawa A, Yamazaki F, Matsumoto K, Nagase H, Tajiri T, Nakagawara A, Ichikawa H, Hishiki T, Kamijo T, JCCG-JNBSG:
    • Organizer
      第79 回日本癌学会学術総会
    • Related Report
      2020 Research-status Report
  • [Presentation] 高リスク神経芽腫の小児がん用NCCオンコパネル解析2020

    • Author(s)
      大平美紀,七野浩之,久保崇,春田雅之,瀧本哲也,中澤温子,山崎文登,松本公一,永瀬浩喜,田尻達郎,中川原章,市川 仁,菱木知郎,上條岳彦,JCCG JNBSG:
    • Organizer
      第62 回日本小児血液・がん学会学術集会
    • Related Report
      2020 Research-status Report
  • [Presentation] Genomic characterization of high-risk neuroblastoma by cancer gene panel tests.2020

    • Author(s)
      Ohira M, Shichino H, Kubo T, Haruta M, Takimoto T, Nakazawa A, Yamazaki F, Matsumoto K, Nagase H, Tajiri T, Nakagawara A, Ichikawa H, Hishiki T, Kamijo T, JCCG-JNBSG:
    • Organizer
      Advances in Neuroblastoma Research (ANR), 2020
    • Related Report
      2020 Research-status Report
    • Int'l Joint Research

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Published: 2020-04-28   Modified: 2026-01-16  

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