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Enzymatic functional analysis for the regulation of circadian rhythm phosphorylation

Research Project

Project/Area Number 20K15766
Research Category

Grant-in-Aid for Early-Career Scientists

Allocation TypeMulti-year Fund
Review Section Basic Section 43040:Biophysics-related
Research InstitutionHokkaido University (2021-2023)
Institute of Physical and Chemical Research (2020)

Principal Investigator

Shinohara Yuta  北海道大学, 遺伝子病制御研究所, 特任講師 (10755193)

Project Period (FY) 2020-04-01 – 2024-03-31
Project Status Completed (Fiscal Year 2023)
Budget Amount *help
¥4,160,000 (Direct Cost: ¥3,200,000、Indirect Cost: ¥960,000)
Fiscal Year 2021: ¥2,080,000 (Direct Cost: ¥1,600,000、Indirect Cost: ¥480,000)
Fiscal Year 2020: ¥2,080,000 (Direct Cost: ¥1,600,000、Indirect Cost: ¥480,000)
Keywords概日リズム / リン酸化酵素 / 温度補償性 / CKIδ / 概日時計 / 多重リン酸化 / 脱リン酸化 / casein kinase 1 / クリプトクロム / タンパク質間相互作用 / 転写活性 / 蛋白質間相互作用 / 校正機能 / 同調機構
Outline of Research at the Start

近年、概日時計システムはCKIδによる時計タンパク質のリン酸化が、周期長を決める律速段階であることが明らかになってきた。これは複数のリン酸化過程を経由するにもかかわらず、動的な複合体形成やリン酸化反応の方向性が極めて正確に同調する。しかし、CKIδの多重リン酸化を同調させる分子機構は解かれていない。これまでに申請者は、CKIδに新規酵素活性であるADP依存的な脱リン酸化を見出している。もし脱リン酸化活性が多重リン酸化制御に働く補正機能だとすれば、概日時計の周期長を同調させる一端を担っていると考えられる。本研究では、脱リン酸化基質モチーフの探索、脱リン酸化活性部位の同定を行う。

Outline of Final Research Achievements

The phosphorylation of CKIδ, which determines the period length of the circadian rhythm, is known to exhibit temperature compensated phosphorylation, independent of temperature. In this study, we explored the biological significance of the newly discovered dephosphorylation activity of CKIδ as a novel enzymatic function in the circadian clock. Through screening of peptides derived from the amino acid sequences of clock protein fragments, we identified peptides that promote the dephosphorylation of CKIδ and strongly interact with the PER2 protein domain. These peptides include sequences that influence the period length of the circadian clock, such as the bTrCP domain, suggesting that dephosphorylation may impact the clock's period.

Academic Significance and Societal Importance of the Research Achievements

CKIδはリン酸化酵素であるにも関わらず脱リン酸化活性が起こり酵素活性としての2面性を有する。しかしリン酸化酵素における脱リン酸化活性の意義は明らかにされていない。本研究ではCKIδの脱リン酸化活性機構の分子メカニズムを生物物理学的なアプローチにより明らかにして、概日リズムにおけるCKIδの脱リン酸化活性の意義を結びつけるための、新しい観点を提示できた。

Report

(5 results)
  • 2023 Annual Research Report   Final Research Report ( PDF )
  • 2022 Research-status Report
  • 2021 Research-status Report
  • 2020 Research-status Report
  • Research Products

    (5 results)

All 2023

All Journal Article (4 results) (of which Peer Reviewed: 4 results,  Open Access: 3 results) Presentation (1 results) (of which Invited: 1 results)

  • [Journal Article] GM-CSF Promotes the Survival of Peripheral-Derived Myeloid Cells in the Central Nervous System for Pain-Induced Relapse of Neuroinflammation2023

    • Author(s)
      Matsuyama Shiina、Yamamoto Reiji、Murakami Kaoru、Takahashi Nobuhiko、Nishi Rieko、Ishii Asuka、Nio Kobayashi Junko、Abe Nobuya、Tanaka Kumiko、Jiang Jing Jing、Kawamoto Tadafumi、Iwanaga Toshihiko、Shinohara Yuta、(4名省略)、Kubota Shimpei I、(4名省略)、Murakami Masaaki
    • Journal Title

      The Journal of Immunology

      Volume: 211 Issue: 1 Pages: 34-42

    • DOI

      10.4049/jimmunol.2200567

    • Related Report
      2023 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Zoobiquity experiments show the importance of the local MMP9-plasminogen axis in inflammatory bowel diseases in both dogs and patients.2023

    • Author(s)
      Takeshi Yamasaki, Noriyuki Nagata, Toru Atsumi, Rie Hasebe, Yuki Tanaka, Izuru Ohki, Shimpei Kubota, Yuta Shinohara, Yong Bin Teoh, Nozomu Yokoyama, Noboru Sasaki, Kensuke Nakamura, Hiroshi Ohta, Takehiko Katsurada, Yoshihiro Matsuno, Shintaro Hojyo, Shigeru Hashimoto, Mitsuyoshi Takiguchi, Masaaki Murakami.
    • Journal Title

      International immunology

      Volume: - Issue: 7 Pages: 313-326

    • DOI

      10.1093/intimm/dxad006

    • Related Report
      2023 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Computer model of IL-6-dependent rheumatoid arthritis in F759 mice2023

    • Author(s)
      Yamamoto Reiji、Yamada Satoshi、Atsumi Toru、Murakami Kaoru、Hashimoto Ari、Naito Seiichiro、Tanaka Yuki、Ohki Izuru、Shinohara Yuta、Iwasaki Norimasa、Yoshimura Akihiko、Jiang Jing-Jing、Kamimura Daisuke、Hojyo Shintaro、Kubota Shimpei I、Hashimoto Shigeru、Murakami Masaaki
    • Journal Title

      International Immunology

      Volume: 35 Issue: 9 Pages: 403-421

    • DOI

      10.1093/intimm/dxad016

    • Related Report
      2023 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] High-precision rapid testing of omicron SARS-CoV-2 variants in clinical samples using AI-nanopore2023

    • Author(s)
      Murakami Kaoru、Kubota Shimpei I.、Tanaka Kumiko、Tanaka Hiroki、Akabane Keiichiroh、Suzuki Rigel、Shinohara Yuta、Takei Hiroyasu、Hashimoto Shigeru、Tanaka Yuki、Hojyo Shintaro、Sakamoto Osamu、Naono Norihiko、Takaai Takayui、(10名省略)、Taniguchi Masateru、Murakami Masaaki
    • Journal Title

      Lab on a Chip

      Volume: 23 Issue: 22 Pages: 4909-4918

    • DOI

      10.1039/d3lc00572k

    • Related Report
      2023 Annual Research Report
    • Peer Reviewed
  • [Presentation] Timekeepers of the mammalian circadian clock regulate post-translational modifications2023

    • Author(s)
      Yuta Shinohara
    • Organizer
      第61回日本生物物理学会年会
    • Related Report
      2023 Annual Research Report
    • Invited

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Published: 2020-04-28   Modified: 2025-01-30  

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