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Heterochromatin dysfunction and its related diseases induced by impaired DNA demethylation

Research Project

Project/Area Number 20KK0351
Research Category

Fund for the Promotion of Joint International Research (Fostering Joint International Research (A))

Allocation TypeMulti-year Fund
Review Section Basic Section 49070:Immunology-related
Research InstitutionChiba University

Principal Investigator

ONODERA Atsushi  千葉大学, 大学院医学研究院, 准教授 (10586598)

Project Period (FY) 2021 – 2022
Project Status Completed (Fiscal Year 2022)
Budget Amount *help
¥14,040,000 (Direct Cost: ¥10,800,000、Indirect Cost: ¥3,240,000)
Keywordsエピジェネティクス / 発生・分化 / 第三世代シークエンス / 炎症性疾患 / 発現制御
Outline of Research at the Start

申請者は今まで一貫してT細胞のepigenetic研究、特にヒストン修飾やDNAシトシンメチル化に着目して、ゲノム上で発現が見られる遺伝子領域(ユークロマチン)を解析してきた。一方、ゲノム上で発現が抑制されている領域(ヘテロクロマチン)は、検出技術の限界もあり解析が難しいが、同領域の転移因子(トランスポゾン)の再活性化が、炎症や細胞癌化に重要との報告が近年相次いでいる。そこで本研究では、基課題で培った実験系を発展させ、ヘテロクロマチンでのシトシンメチル化と転移因子の再活性化の関係性解明に挑戦し、さらには疾患(炎症性亢進および腫瘍化)の関連を明らかにして、疾患制御に進展をもたらしたい。

Outline of Final Research Achievements

We analyzed the association between elevated RNA transposon expression due to heterochromatin dysfunction and the leukemogenesis by using TET-deficient mice as a model. Experimental data were obtained at the La Jolla Institute for Immunology, the main collaborating overseas research institute. Data analysis was supported by University of California, San Diego. As a result of our research, we found a region where heterochromatin was switched to euchromatin by TET deficiency, and RNA transposon expression was induced. The region encodes the Stefin gene cluster, whose human homolog gene expression levels were well-correlated with cancer patients’ prognosis. These findings indicate that heterochromatin dysfunction potentially leads to leukemogenesis through upregulation of RNA transposons.

Academic Significance and Societal Importance of the Research Achievements

ヘテロクロマチン機能不全と疾患発症の関係性を明らかにした報告は少なく、本研究で発表した論文は両者の関係を裏付ける学術的に大きな成果であった。また、ヘテロクロマチンが機能不全を起こす領域にクラスターを形成するStefin遺伝子のヒトにおけるホモログ遺伝子群の高発現は、がん患者の予後に悪影響を与えることが分かった。これらの知見は、Stefin遺伝子群の発現が、がん患者の予後や治療感受性を予測できるバイオマーカーとして使える可能性を示唆し、社会的意義のある研究成果であると言える。

Report

(3 results)
  • 2022 Annual Research Report   Final Research Report ( PDF )
  • 2021 Research-status Report
  • Research Products

    (20 results)

All 2023 2022 2021 Other

All Int'l Joint Research (1 results) Journal Article (10 results) (of which Int'l Joint Research: 2 results,  Peer Reviewed: 8 results,  Open Access: 8 results) Presentation (7 results) (of which Int'l Joint Research: 4 results) Remarks (2 results)

  • [Int'l Joint Research] La Jolla Institute for Immunology(米国)2021

    • Related Report
      2022 Annual Research Report
  • [Journal Article] Characterization of eosinophils and natural killer cells in nasal polyps and peripheral blood in eosinophilic chronic rhinosinusitis patients2023

    • Author(s)
      Tsuji Kaori、Aoki Ami、Onodera Atsushi、Kiuchi Masahiro、Kokubo Kota、Morimoto Yuki、Iinuma Tomohisa、Hanazawa Toyoyuki、Nakayama Toshinori、Hirahara Kiyoshi
    • Journal Title

      Allergology International

      Volume: 72 Issue: 2 Pages: 335-338

    • DOI

      10.1016/j.alit.2022.11.009

    • ISSN
      1323-8930, 1440-1592
    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Thioredoxin-interacting protein is essential for memory T cell formation via the regulation of the redox metabolism2023

    • Author(s)
      Kokubo Kota、Hirahara Kiyoshi、Kiuchi Masahiro、Tsuji Kaori、Shimada Yuki、Sonobe Yuri、Shinmi Rie、Hishiya Takahisa、Iwamura Chiaki、Onodera Atsushi、Nakayama Toshinori
    • Journal Title

      Proceedings of the National Academy of Sciences

      Volume: 120 Issue: 2

    • DOI

      10.1073/pnas.2218345120

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Inducible disruption of Tet genes results in myeloid malignancy, readthrough transcription, and a heterochromatin-to-euchromatin switch2023

    • Author(s)
      Yuita Hiroshi、Lopez-Moyado Isaac F.、Jeong Hyeongmin、Cheng Arthur Xiuyuan、Scott-Browne James、An Jungeun、Nakayama Toshinori、Onodera Atsushi、Ko Myunggon、Rao Anjana
    • Journal Title

      Proceedings of the National Academy of Sciences

      Volume: 120(6) Issue: 6

    • DOI

      10.1073/pnas.2214824120

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Conventional and pathogenic Th2 cells in inflammation, tissue repair, and fibrosis2022

    • Author(s)
      Kokubo Kota、Onodera Atsushi、Kiuchi Masahiro、Tsuji Kaori、Hirahara Kiyoshi、Nakayama Toshinori
    • Journal Title

      Frontiers in Immunology

      Volume: 13 Pages: 945063-945063

    • DOI

      10.3389/fimmu.2022.945063

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Liver group 2 innate lymphoid cells regulate blood glucose levels through IL-13 signaling and suppression of gluconeogenesis2022

    • Author(s)
      Fujimoto Masanori、Yokoyama Masataka、Kiuchi Masahiro、Hosokawa Hiroyuki、Nakayama Akitoshi、Hashimoto Naoko、Sakuma Ikki、Nagano Hidekazu、Yamagata Kazuyuki、Kudo Fujimi、Manabe Ichiro、Lee Eunyoung、Hatano Ryo、Onodera Atsushi、Hirahara Kiyoshi、Yokote Koutaro、Miki Takashi、Nakayama Toshinori、Tanaka Tomoaki
    • Journal Title

      Nature Communications

      Volume: 13 Issue: 1 Pages: 1-21

    • DOI

      10.1038/s41467-022-33171-6

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] シングルセル解析2022

    • Author(s)
      小野寺淳、本橋新一郎
    • Journal Title

      耳鼻咽喉科

      Volume: 2(5) Pages: 666-667

    • Related Report
      2022 Annual Research Report
  • [Journal Article] Roles of TET and TDG in DNA demethylation in proliferating and non-proliferating immune cells2021

    • Author(s)
      Onodera Atsushi、Gonzalez-Avalos Edahi、Lio Chan-Wang Jerry、Georges Romain O.、Bellacosa Alfonso、Nakayama Toshinori、Rao Anjana
    • Journal Title

      Genome Biology

      Volume: 22(1) Issue: 1 Pages: 186-186

    • DOI

      10.1186/s13059-021-02384-1

    • Related Report
      2021 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] CD4+ T cells in inflammatory diseases: pathogenic T-helper cells and the CD69-Myl9 system2021

    • Author(s)
      Nakayama Toshinori、Hirahara Kiyoshi、Kimura Motoko Y、Iwamura Chiaki、Kiuchi Masahiro、Kokubo Kota、Onodera Atsushi、Hashimoto Kahoko、Motohashi Shinichiro
    • Journal Title

      International Immunology

      Volume: 33(12) Issue: 12 Pages: 699-704

    • DOI

      10.1093/intimm/dxab053

    • Related Report
      2021 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Epigenetic regulation of inflammation by CxxC domain‐containing proteins2021

    • Author(s)
      Onodera Atsushi、Kiuchi Masahiro、Kokubo Kota、Nakayama Toshinori
    • Journal Title

      Immunological Reviews

      Volume: 305(1) Issue: 1 Pages: 137-151

    • DOI

      10.1111/imr.13056

    • Related Report
      2021 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] CxxCドメインを持つタンパク質によるT細胞および炎症の制御2021

    • Author(s)
      小野寺淳、木内政宏、中山俊憲
    • Journal Title

      アレルギーの臨床

      Volume: 41(10) Pages: 897-901

    • Related Report
      2021 Research-status Report
  • [Presentation] Unsaturated fatty acids promote pathogenic type 2 adaptive immunity via PPARg-ST2 axis. International Symposium for Future Mucosal Vaccines2023

    • Author(s)
      Yagyu, H., Kiuchi, M., Kokubo, K., Sasaki, A., Onodera, A., Iwamura, C., Kaneko, T., Nakayama T., and Hirahara, K.
    • Organizer
      Safeguards and Innovations against Infectious Diseases
    • Related Report
      2022 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Roles of TET and TDG in DNA demethylation in the immune system. International Symposium for Future Mucosal Vaccines2023

    • Author(s)
      Onodera, A., Tanaka, H., Hirahara, K., Nakayama, T., and Rao, A.
    • Organizer
      Safeguards and Innovations against Infectious Diseases
    • Related Report
      2022 Annual Research Report
    • Int'l Joint Research
  • [Presentation] CD69 regulates anti-tumor CD8T cell responses.2023

    • Author(s)
      Nasu, R., Wang, YS., Endo, Y., Hasegawa, I., Mita, Y., Onodera, A., Motohashi, S., Nakayama T., and Kimura KY.
    • Organizer
      International Symposium for Future Mucosal Vaccines: Safeguards and Innovations against Infectious Diseases
    • Related Report
      2022 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Connecting TET2 deficiency with inflammation in CMML and anti-tumor responses.2022

    • Author(s)
      Singh, AK., Onodera, A., Lopez-Moyado, IF., Sepulveda, H., Angel, JC., Rao, A.
    • Organizer
      AACR, New Orleans, USA
    • Related Report
      2022 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Nematode ascarosides attenuate mammalian type 2 inflammatory responses.2022

    • Author(s)
      Kiuchi, M., Kokubo, K., Onodera, A., Hirahara, K., and Nakayama, T.
    • Organizer
      第51回日本免疫学会学術集会
    • Related Report
      2022 Annual Research Report
  • [Presentation] Trithorax Cxxc1-directed epigenetic machinery licensing CD4+ T cell differentiation2021

    • Author(s)
      Masahiro Kiuchi., Atsushi Onodera., Kota Kokubo., Tomomi Ichikawa., Eiryo Kawakami., Naoya Takayama., Koji Eto., Haruhiko Koseki., Kiyoshi Hirahara., Toshinori Nakayama
    • Organizer
      第85回 日本インターフェロン・サイトカイン学会学術集会
    • Related Report
      2021 Research-status Report
  • [Presentation] The Cxxc1 subunit of the Trithorax complex directs epigenetic licensing of CD4+ T cell differentiation2021

    • Author(s)
      Masahiro Kiuchi., Atsushi Onodera., Kota Kokubo., Eiryo Kawakami., Haruhiko Koseki., Kiyoshi Hirahara., Toshinori Nakayama
    • Organizer
      第50回 日本免疫学会学術集会
    • Related Report
      2021 Research-status Report
  • [Remarks] 千葉大学大学院医学研究院 免疫発生学HP

    • URL

      https://www.m.chiba-u.jp/dept/meneki/

    • Related Report
      2022 Annual Research Report
  • [Remarks] 千葉大学大学院医学研究院 免疫発生学HP

    • URL

      https://www.m.chiba-u.ac.jp/class/meneki/jisseki/

    • Related Report
      2021 Research-status Report

URL: 

Published: 2021-03-19   Modified: 2025-01-30  

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