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In Vitro Molecular Evolution of RNA Entirely Consisting of Prebiotic Materials on the Simulated Primitive Earth

Research Project

Project/Area Number 21200004
Research Category

Grant-in-Aid for Scientific Research on Innovative Areas (Research a proposed research project)

Allocation TypeSingle-year Grants
Research Field Evolutionary biology
Bioinformatics/Life informatics
Research InstitutionHiroshima Shudo University (2010-2011)
Osaka Prefecture University (2009)

Principal Investigator

KAWAMURA Kunio  広島修道大学, 人間環境学部, 教授 (50204772)

Project Period (FY) 2009 – 2011
Project Status Completed (Fiscal Year 2011)
Budget Amount *help
¥30,550,000 (Direct Cost: ¥23,500,000、Indirect Cost: ¥7,050,000)
Fiscal Year 2011: ¥9,880,000 (Direct Cost: ¥7,600,000、Indirect Cost: ¥2,280,000)
Fiscal Year 2010: ¥9,880,000 (Direct Cost: ¥7,600,000、Indirect Cost: ¥2,280,000)
Fiscal Year 2009: ¥10,790,000 (Direct Cost: ¥8,300,000、Indirect Cost: ¥2,490,000)
Keywords生命起源 / 人工生命システム / 化学進化 / RNAワールド / 核酸化学 / 人工生命 / 実験進化学 / RNAの自然選択 / 分析化学
Research Abstract

Discovery of ribozyme suggested the RNA world hypothesis, where RNA molecules played a central role in the primitive life. In addition, in vitro selection technique for RNA aptamers and ribozymes supported the possibility that a number of functional RNA molecules can be created under the primitive earth conditions. However, the in vitro selection technique requires artificial molecular biological tools and equipment. Thus, the possibility that RNA molecules could have been created through an evolutionary system like the in vitro selection technique must be elucidated using entirely primitive materials whether such evolutionary system could have be under the primitive earth condition. Our final goal of the present study is to make an evolutionary system, which is entirely constructed from only primitive materials and determine the pathway of chemical evolution of an RNA-based life-like system from a number of RNA molecules. The evolution of an RNA-based life-like system from RNA molecul … More es consists of the following 4 steps; (1) spontaneous formation of RNA under the primitive earth, (2) replication of the RNA molecules, (3) amplification of the RNA molecules, (4) natural selection of the RNA molecules. In the present study, we attempted to find efficient pathways and conditions for each step to combine each step as a Darwinian evolutionary process. We confirmed that random sequences of RNA molecules consisting of 4 bases can be formed by clay mineral catalytic reaction regarding (1). It was found regarding (4) step that natural selection of RNA molecules could have occurred at high temperatures from random mixed sequences of RNA. We also attempted to find efficient pathways and conditions for step (3) and (4) in the absence of template DNA and enzymes. Although we have not yet found an efficient pathway for replication of RNA under the primitive earth conditions at the present time, we observed an enhancement of oligonucleotide formation directed by oligonucleotide template with an additive. Less

Report

(4 results)
  • 2011 Annual Research Report   Final Research Report ( PDF )
  • 2010 Annual Research Report
  • 2009 Annual Research Report
  • Research Products

    (57 results)

All 2012 2011 2010 2009 Other

All Journal Article (20 results) (of which Peer Reviewed: 20 results) Presentation (33 results) Book (3 results) Remarks (1 results)

  • [Journal Article] Drawbacks of the ancient RNA-based life-like system under primitive earth conditions2012

    • Author(s)
      Kunio Kawamura
    • Journal Title

      Biochimie

      Volume: 94 Pages: 1441-1450

    • Related Report
      2011 Annual Research Report 2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Mineral-enhanced hydrothermal oligopeptide formation at the second time scale2011

    • Author(s)
      Kunio Kawamura, Hitoshi Takeya, Takao Kushibe, Yuka Koizumi
    • Journal Title

      Astrobiology

      Volume: 11(5) Pages: 461-469

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Flow injection analysis combined with a hydrothermal flow reactor: applicat ion to kinetic determination of trace amounts of iridium using a water-soluble porphyrin2011

    • Author(s)
      Kunio Kawamura, Keisuke Ikoma, Shukuro Igarashi, Hideaki Hisamoto, Toshio Yao
    • Journal Title

      Talanta

      Volume: 84(5) Pages: 1318-1322

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Development of micro-flow hydrothermal monitoring systems and their applications to the origin of life study on earth2011

    • Author(s)
      Kunio Kawamura
    • Journal Title

      Anal. Sci.

      Volume: 27 Pages: 675-683

    • NAID

      10029332312

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] 生命起源の解明をめざした熱水フローリアクターシステムの開発2011

    • Author(s)
      川村邦男
    • Journal Title

      ぶんせき

      Volume: 2011(2) Pages: 104-107

    • NAID

      10027906715

    • Related Report
      2011 Final Research Report 2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Development of micro-flow hydrothermal monitoring systems and their applications to the origin of life study on earth2011

    • Author(s)
      Kunio Kawamura
    • Journal Title

      Analytical Sciences

      Volume: 27 Pages: 675-683

    • NAID

      10029332312

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Flow injection analysis combined with a hydrothermal flow reactor : application to kinetic determination of trace amounts of iridium using a water-soluble porphyrin2011

    • Author(s)
      Kunio Kawamur, Keisuke Ikomaa, Shukuro Igarashim Hideaki Hisamoto, Toshio Yao
    • Journal Title

      Talanta

      Volume: 84 Pages: 1318-1322

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Mineral-enhanced hydrothermal oligopeptide formation at the secondtime scale2011

    • Author(s)
      Kunio Kawamura, Hitoshi Takeya, Takao Kushibe, Yuka Koizumi
    • Journal Title

      Astrobiology

      Volume: 11 Pages: 461-469

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Innovations of hydrothermal flow reactors for the chemical evolution on primitive earth: the next step for the experimental evaluation of life-like systems2010

    • Author(s)
      Kunio Kawamura
    • Journal Title

      Viva Origino

      Volume: 38 Pages: 40-45

    • NAID

      110008672761

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Temperature limit for the emergence of life-like system deduced from the prebiotic chemical kinetics under the hydrothermal conditions2010

    • Author(s)
      Kunio Kawamura
    • Journal Title

      Proceedings of the Twelfth International Conference on the Simulation and Synthesis of Living Systems (Edited by, H. Fellermann, M. Dorr, M. M. Hanczyc, L. L. Lauren, S. Maurer, D. Merkle, P.-A. Monnard, K. Stoy, S. Rasmussen)

      Pages: 37-44

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] In situ analysis of proteins at high temperatures mediated by capillary-flow hydrothermal UV-Vis spectrophotometer with a water-soluble chromogenic reagent2010

    • Author(s)
      Kunio Kawamura, Hiroki Nagayoshi, Toshio Yao
    • Journal Title

      Anal. Chim. Acta

      Volume: 667 Pages: 88-95

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] In situ analysis of proteins at high temperatures mediated by capillary-flow hydrothermal UV-Vis spectrophotometer with a water-soluble chromogenic reagent2010

    • Author(s)
      Kunio Kawamura, Hiroki Nagayoshi, Toshio Yao
    • Journal Title

      Analytica Chimica Acta

      Volume: 667 Pages: 88-95

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Temperature limit for the emergence of life-like system deduced from the prebiotic chemical kinetics under the hydrothermal conditions2010

    • Author(s)
      Kunio Kawamura
    • Journal Title

      Proceedings of the Twelfth International Conference on the Simulation and Synthesis of Living Systems

      Pages: 37-44

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Innovations of hydrothermal flow reactors for the chemical evolution on primitive earth : the next step for the experimental evaluation of life-like systems2010

    • Author(s)
      Kunio Kawamura
    • Journal Title

      Viva Origino

      Volume: 37 Pages: 40-45

    • NAID

      110008672761

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Effect of condensation agents and minerals for oligopeptide formation under mild and hydrothermal conditions in related to chemical evolution of proteins2009

    • Author(s)
      Kunio Kawamura, Hitoshi Takeya, Takao Kushibe
    • Journal Title

      Advances in Space Research

      Volume: 44 Pages: 267-275

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Stability of ribonuclease A under hydrothermal conditions in relation to the origin-of-life hypothesis: Verification with the hydrothermal micro-flow reactor system2009

    • Author(s)
      Kunio Kawamura, Hiroki Nagayoshi, Toshio Yao
    • Journal Title

      Research on Chemical Intermediates

      Volume: 35 Pages: 879-891

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] 前生物的化学に基づいてRNAワールド仮説を検証する2009

    • Author(s)
      川村邦男
    • Journal Title

      Viva Origino

      Volume: 37 Pages: 31-42

    • NAID

      110007651038

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Stability of ribonuclease A under hydrothermal conditions in relation to the origin-of-life hypothesis : Verification with the hydrothermal micro-flow reactor system.2009

    • Author(s)
      Kunio Kawamura, Hiroki Nagayoshi, Toshio Yao
    • Journal Title

      Research on Chemical Intermediates 35

      Pages: 879-891

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Effect of condensation agents and minerals for oligopeptide formation under mild and hydrothermal conditions in related to chemical evolution of proteins.2009

    • Author(s)
      Kunio Kawamura, Hitoshi Takeya, Takao Kushibe
    • Journal Title

      Advances in Space Research 44

      Pages: 267-275

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 前生物的化学に基づいてRNAワールド仮説を検証する2009

    • Author(s)
      川村邦男
    • Journal Title

      Viva Origino 37

      Pages: 31-42

    • NAID

      110007651038

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Presentation] Possible RNA-based life-like systems under hydrothermal environments2012

    • Author(s)
      Kunio Kawamura
    • Organizer
      the Symposium"The Future of RNA Worlds"
    • Place of Presentation
      Acides Nucleiques et BioPhotoNique - UPMC 4 Place Jussieu Paris UPMC(Invited lecture)
    • Year and Date
      2012-02-24
    • Related Report
      2011 Final Research Report
  • [Presentation] Behaviors of RNA and peptides under the hydrothermal environments towards the ancient life-like system2012

    • Author(s)
      Kunio Kawamura
    • Organizer
      the Symposium "The Future of RNA Worlds"
    • Place of Presentation
      Paris(招待講演)
    • Year and Date
      2012-02-24
    • Related Report
      2011 Annual Research Report
  • [Presentation] Behaviors of RNA and peptides under the hydrothermal environments towards the ancient life-like system2012

    • Author(s)
      Kunio Kawamura
    • Organizer
      Invited Seminar
    • Place of Presentation
      University de Strasbourg and JSPS Strasbourg office(Invited lecture)
    • Year and Date
      2012-02-17
    • Related Report
      2011 Final Research Report
  • [Presentation] Behaviors of RNA and peptides under the hydrothermal environments towards the ancient life-like system2012

    • Author(s)
      Kunio Kawamura
    • Organizer
      Invited Seminar, University de Strasbourg and JSPS Strasbourg office
    • Place of Presentation
      Strasbourg (France)(招待講演)
    • Year and Date
      2012-02-17
    • Related Report
      2011 Annual Research Report
  • [Presentation] 鉱物充填熱水フローリアクターの開発とオリゴペプチド生成反応に対する鉱物の効果2012

    • Author(s)
      川村邦男
    • Organizer
      第37回生命の起源および進化学会学術講演会
    • Place of Presentation
      高槻
    • Related Report
      2011 Annual Research Report 2011 Final Research Report
  • [Presentation] 化学の挑戦 : 生命起源の解明をめざして2011

    • Author(s)
      川村邦男
    • Organizer
      環境分析化学分野セミナー
    • Place of Presentation
      仙台(招待講演)
    • Year and Date
      2011-11-25
    • Related Report
      2011 Final Research Report
  • [Presentation] Evaluation of the RNA world hypothesis and the GADV hypothesis on the basis of the hydrothermal origin-of-life hypothesis2011

    • Author(s)
      Kunio Kawamura
    • Organizer
      Narasaho-Seminar on the Origin of Life
    • Place of Presentation
      Nara(Invited lecture)
    • Year and Date
      2011-01-17
    • Related Report
      2011 Final Research Report
  • [Presentation] Evaluation of the RNA world hypothesis and the GADV hypothesis on the basis of the hydrothermal origin-of-life hypothesis2011

    • Author(s)
      Kunio Kawamura
    • Organizer
      Narasaho-Seminar on the Origin of Life
    • Place of Presentation
      奈良市(招待講演)
    • Year and Date
      2011-01-17
    • Related Report
      2010 Annual Research Report
  • [Presentation] 溶融シリカキャピラリーを用いる分光法 : 高温高圧液相反応のその場観測2011

    • Author(s)
      川村邦男
    • Organizer
      第31回キャピラリー電気泳動シンポジウム
    • Place of Presentation
      鶴岡
    • Related Report
      2011 Final Research Report
  • [Presentation] The role of minerals for the format ion of oligopeptide using a newly developed mineral-mediated hydrothermal reactor system2011

    • Author(s)
      Kunio Kawamura, Hitoshi Takeya, Takao Kushibe, Yuka Koizumi
    • Organizer
      ISSOL and IAU meeting
    • Place of Presentation
      Montpellier
    • Related Report
      2011 Final Research Report
  • [Presentation] キャピラリーHPLCを用いる短鎖核酸の分離分析法の開発2011

    • Author(s)
      生駒佳祐, 久本秀明, 川村邦男
    • Organizer
      第22回クロマトグラフィー科学会議
    • Place of Presentation
      仙台
    • Related Report
      2011 Final Research Report
  • [Presentation] モノリスカラムを用いる1~30鎖長ヌクレオチドのキャピラリーLC分離挙動2011

    • Author(s)
      生駒佳祐, 久本秀明, 川村邦男
    • Organizer
      日本化学会第91春季年会
    • Place of Presentation
      横浜
    • Related Report
      2011 Final Research Report
  • [Presentation] 溶融シリカキャピラリーを用いる分光法:高温高圧液相反応のその場観測2011

    • Author(s)
      川村邦男
    • Organizer
      第31回キャピラリー電気泳動シンポジウム
    • Place of Presentation
      鶴岡
    • Related Report
      2011 Annual Research Report
  • [Presentation] Development of micro-flow analytical techniques for hydrothermal reactions2010

    • Author(s)
      Kunio Kawamura, Keisuke Ikoma, Tomoko Yasuda, Hiroki Nagayoshi, Hitoshi Takeya, Shukuro Igarashi, Hideaki Hisamoto, Toshio Yao
    • Organizer
      The 2010 International Chemical Congress of Pacific Basin Societ ies (Pachifichem 2010)
    • Place of Presentation
      Honolulu, Hawaii
    • Related Report
      2011 Final Research Report
  • [Presentation] Temperature limit for the emergence of life-like system deduced from the prebiotic chemical kinetics under the hydrothermal conditions2010

    • Author(s)
      Kunio Kawamura
    • Organizer
      Artificial Life 12
    • Place of Presentation
      Odense, Denmark
    • Related Report
      2011 Final Research Report
  • [Presentation] Chemical evolution of life-like system under hydrothermal environments: prebiotic formation, degradation, and functions regarding protein-like molecules and RNA2010

    • Author(s)
      Kunio Kawamura
    • Organizer
      COSPAR Scientific Assembly 2010
    • Place of Presentation
      Bremen, Germany
    • Related Report
      2011 Final Research Report
  • [Presentation] 熱水分析技術の開発と化学進化研究への展開2010

    • Author(s)
      川村邦男
    • Organizer
      生命の起原および進化学会第35回学術講演会
    • Place of Presentation
      函館(依頼シンポジウム講演)
    • Related Report
      2011 Final Research Report
  • [Presentation] 生命の定義と化学進化研究に基づいてリアルな原始生命体を描く2010

    • Author(s)
      川村邦男
    • Organizer
      国際高等研究所フェロー(池原)研究会「生命の本質-遺伝子、遺伝暗号、タンパク質および生命の起源」
    • Place of Presentation
      木津川(招待講演)
    • Related Report
      2011 Final Research Report
  • [Presentation] Presentation title is not publishable2010

    • Author(s)
      Kunio Kawamura, Hitoshi Takeya, Takao Kushibe
    • Organizer
      Go rdon Research Conference: Origin of Life
    • Place of Presentation
      Galveston, USA
    • Related Report
      2011 Final Research Report
  • [Presentation] Development of real-time and in situ UV-visible monitoring methods for hydrothermal reactions and its applications to the origin of life study2010

    • Author(s)
      Kunio Kawamura
    • Organizer
      The 2010 International Chemical Congress of Pacific Basin Societies
    • Place of Presentation
      ホノルル(ハワイ)
    • Related Report
      2010 Annual Research Report
  • [Presentation] Temperature limit for the emergence of life-like system deduced from the prebiotic chemical kinetics under the hydrothermal conditions2010

    • Author(s)
      Kunio Kawamura
    • Organizer
      Artificial Life 12
    • Place of Presentation
      オーデンセ(デンマーク)
    • Related Report
      2010 Annual Research Report
  • [Presentation] Chemical evolution of life-like system under hydrothermal environments : prebiotic formation, degradation, and functions regarding protein-like molecules and RNA2010

    • Author(s)
      Kunio Kawamura
    • Organizer
      COSPAR Scientific Assembly 2010
    • Place of Presentation
      ブレーメン(ドイツ)
    • Related Report
      2010 Annual Research Report
  • [Presentation] Investigations of mineral activity for the biopolymer formation under hydrothermal conditions using a mineral-mediated micro-flow reactor2010

    • Author(s)
      川村邦男, 竹家均, 櫛部崇夫
    • Organizer
      Gordon Research Conference
    • Place of Presentation
      ガルベストン(アメリカ)
    • Related Report
      2009 Annual Research Report
  • [Presentation] 生命の定義と化学進化研究に基づいてリアルな原始生命体を描く2010

    • Author(s)
      川村邦男
    • Organizer
      国際高等研究所フェロー(池原)研究会
    • Place of Presentation
      国際高等研究所(木津川市)
    • Related Report
      2009 Annual Research Report
  • [Presentation] 熱水分析技術の開発と化学進化研究への展開2010

    • Author(s)
      川村邦男
    • Organizer
      生命の起原および進化学会第35回学術講演会
    • Place of Presentation
      公立はこだて未来大学(函館市)
    • Related Report
      2009 Annual Research Report
  • [Presentation] 高温高圧溶液反応を用いたリアルタイム高速分析法の開発2009

    • Author(s)
      生駒佳祐、安田知子、八尾俊男、川村邦男
    • Organizer
      第48回フローインジェクション分析講演会
    • Place of Presentation
      堺
    • Year and Date
      2009-11-27
    • Related Report
      2011 Final Research Report
  • [Presentation] 高温高圧溶液反応を用いたリアルタイム高速分析法の開発2009

    • Author(s)
      生駒佳祐, 安田知子, 八尾俊男, 川村邦男
    • Organizer
      第48回フローインジェクション分析講演会
    • Place of Presentation
      大阪府立大学(堺市)
    • Year and Date
      2009-11-27
    • Related Report
      2009 Annual Research Report
  • [Presentation] タンパク質の化学進化と生命の熱水起原2009

    • Author(s)
      川村邦男
    • Organizer
      国際高等研究所フェロー(池原)研究会「生命の本質-遺伝子、遺伝暗号、タンパク質および生命の起源」
    • Place of Presentation
      木津川
    • Related Report
      2011 Final Research Report
  • [Presentation] 生命らしさからみるRNAワールド2009

    • Author(s)
      川村邦男
    • Organizer
      国際高等研究所フェロー(池原)研究会「生命の本質-遺伝子、遺伝暗号、タンパク質および生命の起源」
    • Place of Presentation
      木津川(招待講演)
    • Related Report
      2011 Final Research Report
  • [Presentation] 原始地球環境におけるオリゴペプチド生成反応に対する縮合剤および鉱物の影響2009

    • Author(s)
      川村邦男・竹家均・櫛部崇夫
    • Organizer
      2009年度日本地球化学会年会
    • Place of Presentation
      東広島
    • Related Report
      2011 Final Research Report
  • [Presentation] 原始地球環境におけるオリゴペプチド生成反応に対する縮合剤および鉱物の影響2009

    • Author(s)
      川村邦男, 竹家均, 櫛部崇夫
    • Organizer
      2009年度日本地球化学会年会
    • Place of Presentation
      広島大学(東広島市)
    • Related Report
      2009 Annual Research Report
  • [Presentation] 生命らしさからみるRNAワールド2009

    • Author(s)
      川村邦男
    • Organizer
      国際高等研究所フェロー(池原)研究会
    • Place of Presentation
      国際高等研究所(木津川市)
    • Related Report
      2009 Annual Research Report
  • [Presentation] タンパク質の化学進化と生命の熱水起原2009

    • Author(s)
      川村邦男
    • Organizer
      国際高等研究所フェロー(池原)研究会
    • Place of Presentation
      国際高等研究所(木津川市)
    • Related Report
      2009 Annual Research Report
  • [Book] Reality of the emergence of life-like systems from simple prebiotic polymers on primitive earth, GENESIS - IN THE BEGINNING: Precursors of Life, Chemical Models and Early biological Evolution(Eds. by Ricardo Amils, Muriel Gargaud, Jose Cernicharo Quintanilla, Henderson James Cleaves, William M. Irvine, Daniele Pinti, Michel Viso)2012

    • Author(s)
      Kunio Kawamura
    • Publisher
      Springer
    • Related Report
      2011 Final Research Report
  • [Book] "Reality of the emergence of life-like systems from simple prebiotic polymers on primitive earth" in "GENESIS-IN THE BEGINNING: Precursors of Life, Chemical Models and Early biological Evolution"(Eds.by Joseph Seckbach and Richard Gordon)2012

    • Author(s)
      Kuno Kawamura
    • Publisher
      Springer(印刷中)
    • Related Report
      2011 Annual Research Report
  • [Book] Chapters "Activated Nucleotide", "Oligonuleotide", and "Nucleotide Phosphorimidazolide", Encyclopedia of Astrobiology(Eds. by Ricardo Amils, Muriel Gargaud, Jose Cernicharo Quintanilla, Henderson James Cleaves, William M. Irvine, Daniele Pinti, Michel Viso)2011

    • Author(s)
      Kunio Kawamura
    • Total Pages
      1853
    • Publisher
      Springer
    • Related Report
      2011 Final Research Report
  • [Remarks]

    • URL

      http://ns1.shudo-u.ac.jp/~kawamura/index.html

    • Related Report
      2011 Final Research Report

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Published: 2009-04-01   Modified: 2018-03-28  

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