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Molecular mechanism of genetic DNA rearrangements in fission yeast

Research Project

Project/Area Number 21247027
Research Category

Grant-in-Aid for Scientific Research (A)

Allocation TypeSingle-year Grants
Section一般
Research Field Molecular biology
Research InstitutionTokyo Institute of Technology

Principal Investigator

IWASAKI Hiroshi  東京工業大学, 大学院・生命理工学研究科, 教授 (60232659)

Project Period (FY) 2009 – 2011
Project Status Completed (Fiscal Year 2011)
Budget Amount *help
¥45,760,000 (Direct Cost: ¥35,200,000、Indirect Cost: ¥10,560,000)
Fiscal Year 2011: ¥15,470,000 (Direct Cost: ¥11,900,000、Indirect Cost: ¥3,570,000)
Fiscal Year 2010: ¥15,470,000 (Direct Cost: ¥11,900,000、Indirect Cost: ¥3,570,000)
Fiscal Year 2009: ¥14,820,000 (Direct Cost: ¥11,400,000、Indirect Cost: ¥3,420,000)
Keywords相同組換え / DNA二重鎖切断 / DNA修復 / DNA鎖交換反応 / 分裂酵母 / Rad22 / MRN複合体 / Ctp1 / Dmc1
Research Abstract

We are very much interested in molecular mechanism of genetic DNA rearrangements(e. g. homologous recombination), and thus during this proposed research period we tried to elucidate some functions of proteins involved in genetic rearrangements in fission yeast, which was used as a model biological system. Among several approaches we took for this aim, we had a great achievement for analysis of Dmc1 recombinase that works for meiotic recombination. We demonstrated fission yeast Dmc1-mediated Holliday junction formation in vitro. The directionality is 5'-3', which is the same as that by bacterial RecA but the opposite by Rad51 recombinases. Our finding is very important to understand for molecular mechanisms of meiotic recombination that accompanies high level of crossover products.

Report

(4 results)
  • 2011 Annual Research Report   Final Research Report ( PDF )
  • 2010 Annual Research Report
  • 2009 Annual Research Report
  • Research Products

    (36 results)

All 2012 2011 2010 2009 Other

All Journal Article (15 results) (of which Peer Reviewed: 15 results) Presentation (17 results) Book (2 results) Remarks (2 results)

  • [Journal Article] Mechanistic insights into the activation of Rad51-mediated strand exchange from the structure of a recombination activator, the Swi5-Sfr1 complex2012

    • Author(s)
      Kuwabara N, Murayama Y, Hashimoto H, Kokabu Y, Ikeguchi M, Sato M, Mayanagi K, Tsutsui Y, Iwasaki H, Shimizu T
    • Journal Title

      Structure

      Volume: 20 Pages: 440-449

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Opposing role of condensing hinge against replication protein A in mitosis and interphase through promoting DNA annealing2011

    • Author(s)
      Yuko Akai, Yumiko Kurokawa, Norihiko Nakazawa, Yuko Tonami-Murakami, Yuki Suzuki, Shige H.Yoshimura, Hiroshi Iwasaki, Yoshiharu Shiroiwa, Takahiro Nakamura, Eri Shibata, Mitsuhiro Yanagida
    • Journal Title

      Open Biology

      Volume: 1 Issue: 4 Pages: 110023-110023

    • DOI

      10.1098/rsob.110023

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] The fission yeast Swi5-Sfr1 complex, an activator of Rad51 recombinase, forms an extremely elongated Dogleg-shaped structure2011

    • Author(s)
      Kokabu Y, Murayama Y, Kuwabara N, Oroguchi T, Hashimoto H, Tsutsui Y, Nozaki N, Akashi S, Unzai S, Shimizu T, Iwasaki H, Sato M, Ikeguchi M
    • Journal Title

      J Biol Chem

      Volume: 286 Pages: 43569-76

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Cells polarity in Saccharomyces cerevisiae depends on proper localization of the Bud9 landmark protein by the EKC/KEOPS complex2011

    • Author(s)
      Kato Y, Kawasaki H, Ohyama Y, Morishita T, Iwasaki H, Kokubo T, Hirano H
    • Journal Title

      Genetics

      Volume: 188 Pages: 871-882

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] An in vitro assay for monitoring the formation and branch migration of Holliday junctions mediated by a eukaryotic recombinase2011

    • Author(s)
      Murayama Y and Iwasaki H
    • Journal Title

      Methods Mol. Biol

      Volume: 745 Pages: 385-405

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] The fission yeast meiosis-specific Dmc1 recombinase mediates formation and branch migration of Holliday junctions by preferentially promoting strand-exchange in a direction opposite to that of Rad512011

    • Author(s)
      Murayama Y, Tsutui, Y and Iwasaki H
    • Journal Title

      Genes Dev

      Volume: 25 Pages: 516-527

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] The fission yeast Swi5-Sfr1 complex, an activator of Rad51 recombinase, forms an extremely elongated Dogleg-shaped structure2011

    • Author(s)
      Kokabu Y, Murayama Y, Kuwabara N, Oroguchi T, Hashimoto H, Tsutsui Y, Nozaki N, Akashi S, Unzai S, Shimizu T, Iwasaki H, Sato M, Ikeguchi M
    • Journal Title

      J Biol Chem.

      Volume: 286 Pages: 43569-76

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] An in vitro assay for monitoring the formation and branch migration of Holliday junctions mediated by a eukaryotic recombinase2011

    • Author(s)
      Murayama Y, Iwasaki H
    • Journal Title

      Methods Mol.Biol.

      Volume: 745 Pages: 385-405

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] The fission yeast meiosis-specific Dmcl recombinase mediates formation and branch migration of Holliday junctions by preferentially promoting strand-exchange in a direction opposite to that of Rad51.2011

    • Author(s)
      Murayama Y., Tsutui, Y., Iwasaki H.
    • Journal Title

      Genes Dev.

      Volume: 25 Pages: 516-527

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Srs2 plays a critical role in reversible G2 arrest upon chronic and low doses of UV irradiation via two distinct homologous recombination-dependent mechanisms in post-replication repair deficient cells2010

    • Author(s)
      Hishida T, Hirade Y, Haruta N, Kubota Y and Iwasaki H
    • Journal Title

      Mol. Cell. Biol

      Volume: 30 Pages: 4840-4850

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Purification and crystallization of Swi5 and Swi5-Sfr1 complex from fission yeast2010

    • Author(s)
      Kuwabara N, Hashimoto H, Yamada N, Unzai S, Ikeguchi M, Sato M, Murayama Y, Iwasaki H and Shimizu T
    • Journal Title

      Acta Crystallogr Sect F Struct Biol Cryst Commun

      Volume: F66 Pages: 1124-1126

    • Related Report
      2011 Final Research Report 2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Srs2 plays a critical role in reversible G2 arrest upon chronic and low doses of UV irradiation via two distinct homologous recombination-dependent mechanisms in post-replication repair deficient cells.2010

    • Author(s)
      Hishida T, Hirade Y, Haruta N, Kubota Y, Iwasaki H
    • Journal Title

      Mol.Cell.Biol

      Volume: 30 Pages: 4840-4850

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Nbs1 flexibly tethers Ctp1 and Mre11-Rad50 to coordinate DNA double-strand break processing and repair2009

    • Author(s)
      Williams RS, Dodson GE, Limbo O, Yamada Y, Williams JS, Guenther G, Classen S, Glover JN, Iwasaki H Russell P and Tainer JA.
    • Journal Title

      Cell

      Volume: 139 Pages: 87-99

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] RAD6-RAD18-RAD5 pathway-dependent tolerance to chronic low-dose UV light2009

    • Author(s)
      Hishida T, Kubota Y, Carr AM, and Iwasaki H
    • Journal Title

      Nature

      Volume: 457 Pages: 612-615

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Nbs 1 flexibly tethers Ctp 1 and Mre 11-Rad50 to coordinate DNA double-strand break processing and repair2009

    • Author(s)
      Williams RS, Dodson GE, Limbo O, Yamada Y, Williams JS, Guenther G, Classen S, Glover JN, Iwasaki H, Russell P, Tainer JA
    • Journal Title

      Cell 139

      Pages: 87-99

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Presentation] Regulation of Rad51 and Dmc1 recombinases in fission yeast2011

    • Author(s)
      Iwasaki, H
    • Organizer
      New frontier of the research in Rad51 recombinase and its accessory proteins
    • Place of Presentation
      Institut de Biologie Physico Chimique, Paris(招待講演)
    • Year and Date
      2011-09-28
    • Related Report
      2011 Annual Research Report
  • [Presentation] Reconstitution of two DNA strand exchange reactions during homologous recombination2011

    • Author(s)
      Iwasaki H.
    • Organizer
      第34回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜
    • Related Report
      2011 Final Research Report
  • [Presentation] Regulation of Rad51 recombinase in fission yeast. Japan-France conference on the RecA family recombinases : New Frontier of the research on Rad51 recombinases and its accessory proteins(Meeting organizer)2011

    • Author(s)
      Iwasaki H.
    • Organizer
      Institut de Biologie Physico Chimique
    • Place of Presentation
      Paris, France
    • Related Report
      2011 Final Research Report
  • [Presentation] 相同組換えにおけるDNA鎖交換反応の制御機構2011

    • Author(s)
      岩崎博史
    • Organizer
      日本遺伝学会第83回大会
    • Place of Presentation
      京都大学農学部・農学研究科
    • Related Report
      2011 Final Research Report
  • [Presentation] Differential effects of Rad22 on the Rad51-and Dmc1-mediated DNA strand exchange reactions2011

    • Author(s)
      Iwasaki H.
    • Organizer
      6^<th> international fission yeast meeting
    • Place of Presentation
      Harvard Medical School, Boston, USA
    • Related Report
      2011 Final Research Report
  • [Presentation] Molecular mechanism of DNA strand exchange reaction, a central reaction of homologous recombination mediated by recombinases2011

    • Author(s)
      Iwasaki H.
    • Organizer
      China-Japan Symposium on Cancer Research
    • Place of Presentation
      深川,中国
    • Related Report
      2011 Final Research Report
  • [Presentation] Molecular mechanism of DNA strand exchange reaction, a central reaction of homologous recombination mediated by recombinases2011

    • Author(s)
      Iwassaki, H
    • Organizer
      China-Japan Symposium on Cancer Research
    • Place of Presentation
      Shinzhen, China(招待講演)
    • Related Report
      2011 Annual Research Report
  • [Presentation] Differential effects of Rad22 on the Rad51- and Dmc1-mediated DNA strand exchange reactions2011

    • Author(s)
      Iwasaki, H
    • Organizer
      6^<th> international fission yeast meeting
    • Place of Presentation
      Harvard Medical School, Boston, USA(招待講演)
    • Related Report
      2011 Annual Research Report
  • [Presentation] 組換え修復の分子機構2011

    • Author(s)
      岩崎博史
    • Organizer
      生化学若い研究者の会
    • Place of Presentation
      八王子セミナーハウス(招待講演)
    • Related Report
      2011 Annual Research Report
  • [Presentation] 相同組換えにおけるDNA鎖交換反応の制御機構2011

    • Author(s)
      岩崎博史
    • Organizer
      日本遺伝学会第83回大会
    • Place of Presentation
      京都大学農学部・農学研究科(招待講演)
    • Related Report
      2011 Annual Research Report
  • [Presentation] Reconstitution of two DNA strand exchange reactions during homologous recombination2011

    • Author(s)
      岩崎博史
    • Organizer
      第34回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜(招待講演)
    • Related Report
      2011 Annual Research Report
  • [Presentation] 組換え修復とHolliday構造の分岐点移動反応の方向性2010

    • Author(s)
      岩崎博史
    • Organizer
      日本分子生物学会生化学会合同年会
    • Place of Presentation
      神戸ポートアイランド
    • Related Report
      2011 Final Research Report
  • [Presentation] Biochemical differences between Rad51 and Dmc1 rcombinases from fission yeast2010

    • Author(s)
      Iwasaki H.
    • Organizer
      3R Symposium
    • Place of Presentation
      富山国際会議場
    • Related Report
      2011 Final Research Report
  • [Presentation] 組換え修復とHolliday構造の分岐点移動反応の方向性2010

    • Author(s)
      岩崎博史
    • Organizer
      日本分子生物学会生化学会合同年会 BMB2010
    • Place of Presentation
      神戸ポートアイランド
    • Related Report
      2010 Annual Research Report
  • [Presentation] Characterization for in vitro sumoylation of Schizosaccharomyses pombe Rad22 protein involved in homologous recombination and recombination repair2009

    • Author(s)
      Yumiko Kurokawa, Yasuto Murayama, Yasuhiro Tsutsui, Fumiaki Yamao, Hiroshi Iwasaki
    • Organizer
      第32回 日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜
    • Year and Date
      2009-12-10
    • Related Report
      2009 Annual Research Report
  • [Presentation] Biochemical analysis of fissionyeast recombinases and their auxiliaryproteins2009

    • Author(s)
      Iwasaki H.
    • Organizer
      5^<th> international fission yeast meeting
    • Place of Presentation
      国立オリンピック記念青少年総合センター、東京
    • Related Report
      2011 Final Research Report
  • [Presentation] Regulation of strand exchange reactions by mediator proteins2009

    • Author(s)
      Iwasaki H.
    • Organizer
      FASEB Summer Research Conference
    • Place of Presentation
      Snowmass Village, Colorado, USA
    • Related Report
      2011 Final Research Report
  • [Book] Human CtIP and its homolog : Team players in DSB resection games. In DNA repair. On the pathways to Fixing DNA Damage and Errors2011

    • Author(s)
      Tsutsui Y, Kawasaki A and Iwasaki H.
    • Total Pages
      380
    • Publisher
      InTech社
    • Related Report
      2011 Final Research Report
  • [Book] Human CtIP and its homologs : Team players in DSB resection games. in DNA Repair-On the pathways to Fixing DNA Damage and Errors(Ed Storici)2011

    • Author(s)
      Tsutsui Y, Kawasaki A, Iwasaki, H
    • Publisher
      InTech
    • Related Report
      2011 Annual Research Report
  • [Remarks]

    • URL

      http://www.iwasakilab.bio.titech.ac.jp/

    • Related Report
      2011 Final Research Report
  • [Remarks]

    • URL

      http://www.iwasakilab.bio.titech.ac.jp/

    • Related Report
      2009 Annual Research Report

URL: 

Published: 2009-04-01   Modified: 2016-04-21  

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