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Epigenetic Regulation in Development and Differentiation

Research Project

Project/Area Number 21249016
Research Category

Grant-in-Aid for Scientific Research (A)

Allocation TypeSingle-year Grants
Section一般
Research Field General medical chemistry
Research InstitutionOsaka University

Principal Investigator

NAKANO Toru  大阪大学, 生命機能研究科, 教授 (00172370)

Project Period (FY) 2009 – 2011
Project Status Completed (Fiscal Year 2011)
Budget Amount *help
¥47,970,000 (Direct Cost: ¥36,900,000、Indirect Cost: ¥11,070,000)
Fiscal Year 2011: ¥14,820,000 (Direct Cost: ¥11,400,000、Indirect Cost: ¥3,420,000)
Fiscal Year 2010: ¥15,730,000 (Direct Cost: ¥12,100,000、Indirect Cost: ¥3,630,000)
Fiscal Year 2009: ¥17,420,000 (Direct Cost: ¥13,400,000、Indirect Cost: ¥4,020,000)
KeywordsDNAメチル化 / ヒストン修飾 / エピジェネティクス / クロマチン / 遺伝子発現 / 悪性腫瘍 / 初期発生 / メチル化シトシン / ハイドロキシメチル化シトシン / 細胞分化 / 小分子RNA / 精子形成
Research Abstract

Establishment of epigenetic state is critically important for development and differentiation of multicellular organisms. In this project, we carried out following three issues on the establishment of epigenetic status.
1. Function of PGC7/ Stella, a regulator of DNA methylation in early embryos.: PGC7/ Stella has the effect to prevent" active DNA demethylation" in early embryos. We identified that the binding of PGC/ Stella to H3K9me2(dimethylated lysine 9 of histone H3) is critically important for the function. During the course of this project, Tet protein plays critical roles in active DNA demethylation by converting 5-methyl cytosine to 5-hydroxymethyl cytosine. Based on this data, we revealed that the binding of Tet-3, the most abundant Tet protein in early embryos, to chromatin is inhibited by PGC7.
2. We analyzed the function of GATA-1 transcription factor using in vitro hematopoietic differentiation induction system from ES cells. Controlled expression of GATA-1 at different time points showed that the function of the factor is quite varied dependent on the time point and its different roles were controlled by epigenetic mechanisms.
3. We find that GS cells(Germline stem cells) are a quite useful resource for studying the biogenesis of piRNA and that the initial phase of piRNA production is carried out in the cells. Using GS cells, we succeeded to identify a protein involved in piRNA biogenesis. In addition, we established a novel experimental system to induce piRNA and subsequent DNA methylation in the transgenic mice.

Report

(4 results)
  • 2011 Annual Research Report   Final Research Report ( PDF )
  • 2010 Annual Research Report
  • 2009 Annual Research Report
  • Research Products

    (47 results)

All 2012 2011 2010 2009 Other

All Journal Article (33 results) (of which Peer Reviewed: 33 results) Presentation (14 results)

  • [Journal Article] PGC7 binds histone H3K9me2 to protect against conversion of 5MeC to 5HmC in early embryos2012

    • Author(s)
      Nakamura T, Liu YU, Nakashima H, UmeharaH, Inoue K, Matoba S, Tachibana M, OguraA, Shinkai Y, Nakano T.
    • Journal Title

      Nature

      Volume: (in press)

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Essential role of DPPA3 for chromatin condensation in mouse oocytogenesis2012

    • Author(s)
      Ohishi K, Nakano T.
    • Journal Title

      FEBS J

      Volume: 279 Pages: 832-43

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Essential role of DPPA3 for chromatin condensation in mouse oocytogenesis2012

    • Author(s)
      Liu YJ, Nakamura T, Nakano T
    • Journal Title

      Biol Rep

      Volume: 86 Pages: 1-8

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Essential role of DPPA3 for chromatin condensation in mouse oocytogenesis2012

    • Author(s)
      Liu YJ, Nakamura T, Nakano T.
    • Journal Title

      Biol Rep

      Volume: (in press)

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] PGC7/Stella links H3K9me2 to protect against conversion of 5MeC to 5HmC in early embryos2012

    • Author(s)
      Nakamura T, et al
    • Journal Title

      Nature

      Volume: (in press)

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] RNAi-mediated knockdown of Xist can rescue the impaired postimplantation development of cloned mouse embryos.2011

    • Author(s)
      Matoba S, Inoue K, Kohda T, Sugimoto M, Mizutani E, Ogonuki N, Nakamura T, Abe K, Nakano T, Ishino F, Ogura A
    • Journal Title

      Proc Natl Acad Sci USA

      Volume: 108 Pages: 20621-6

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Locus-and domain-dependent control of DNA methylation at mouse B1 retrotransposons during male germ cell development2011

    • Author(s)
      Ichiyanagi K, Li Y, Watanabe T, Ichiyanagi T, Fukuda K, Kitayama J, Yamamoto Y, Kuramochi-Miyagawa S, NakanoT, Yabuta Y, Seki Y, Saitou M, Sasaki H
    • Journal Title

      Genome Res

      Volume: 21 Pages: 2058-66

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Tudor domain containing 7(Tdrd7) is essential for dynamic ribonucleoprotein(RNP) remodeling of chromatoid bodies during spermatogenesis2011

    • Author(s)
      Tanaka T, Hosokawa M, Vagin VV, ReuterM, Hayashi E, Mochizuki AL, Kitamura K, Yamanaka H, Kondoh G, Okawa K, Kuramochi-Miyagawa S, Nakano T, Sachidanandam R, Hannon GJ, Pillai RS, Nakatsuji N, Chuma S
    • Journal Title

      Proc Natl Acad Sci USA

      Volume: 108 Pages: 10579-10584

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Regulation of the MDM2-P53 pathway and tumor growth by PICT1 via nucleolar RPL112011

    • Author(s)
      Sasaki M, Kawahara K, Nishio M, MimoriK, Kogo R, Hamada K, Itoh B, Wang J, KomatsuY, Yang YR, Hikasa H, Horie Y, YamashitaT, Kamijo T, Zhang Y, Zhu Y, Prives C, Nakano T, Mak TW, Sasaki T, Maehama T, MoriM, Suzuki A
    • Journal Title

      Nat Med

      Volume: 17 Pages: 944-951

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] In vitro generation of HSC-like cells from murine ESCs/ iPSCs by enforced expression of LIM-homeobox transcription factor Lhx22011

    • Author(s)
      Kitajima K, Minehata K, Sakimura K, Nakano T, Hara T
    • Journal Title

      Blood

      Volume: 117 Pages: 3748-3758

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Role for piRNAs and a novel non-coding RNA in de novo DNA methylation of the imprinted mouse Rasgrf1 locus2011

    • Author(s)
      Watanabe T, Tomizawa S, Mitsuya K, Totoki Y, Yamamoto Y, Kuramochi-Miyagawa S, Iida N, Hoki Y, Murphy PJ, Toyoda A, Gotoh K, Hiura H, Arima T, Fujiyama A, Sado T, Shibata T, Nakano T, Lin H, Ichiyanagi K, Soloway PD, Sasaki H
    • Journal Title

      Science

      Volume: 332 Pages: 848-852

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Induction of pluripotency in primordial germ cells2011

    • Author(s)
      Kimura T, Nakano T
    • Journal Title

      Histol Histopathol

      Volume: 26 Pages: 643-650

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Sox9 sustains chondrocyte survival and hypertrophy in part through Pik3ca-Akt pathways2011

    • Author(s)
      Ikegami D, Akiyama H, Suzuki A, Nakamura T, Nakano T, Yoshikawa H, Tsumaki N
    • Journal Title

      Development

      Volume: 138 Pages: 1507-1519

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] MitoPLD Is a Mitochondrial Protein Essential for Nuage Formation and piRNA Biogenesis in the Mouse Germline2011

    • Author(s)
      Watanabe T, Chuma S, Yamamoto Y, Kuramochi-Miyagawa S, Totoki Y, Toyoda A, Hoki Y, Fujiyama A, Shibata T, Sado T, Noce T, Nakano T, Nakatsuji N, Lin H, Sasaki H
    • Journal Title

      Dev Cell

      Volume: 20 Pages: 364-375

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] 5-hydroxymethylcytosine in the mammalian zygote is linked with epigenetic reprogramming2011

    • Author(s)
      Wossidlo M, Nakamura T, Lepikhov K, Marques J, Zakhartchenko V, Boiani M, Arand J, Nakano T, Reik W, Walter J
    • Journal Title

      Nature Commun

      Volume: 2 Pages: 241-241

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Loss of Lhx1 activity impacts on the localization of primordial germ cells in the mouse2011

    • Author(s)
      Tanaka SS, Yamaguchi YL, Steiner KA, Nakano T, Nishinakamura R, Kwan KM, Behringer RR, Tam PP
    • Journal Title

      Dev Dyn

      Volume: 239 Pages: 2851-9

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] 5-hydroxymethylcy tosine in the mammalian zygote is linked with epigenetic reprogramming2011

    • Author(s)
      Wossidlo M, et al
    • Journal Title

      Nature Commun

      Volume: 2 Issue: 1 Pages: 241-241

    • DOI

      10.1038/ncomms1240

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Tseng CP Disabled-2 is required for mesoderm differentiation of murine embryonic stem cells2010

    • Author(s)
      Huang CL, Cheng JC, Kitajima K, Nakano T, Yeh CF, Chong KY,
    • Journal Title

      J Cell Physiol

      Volume: 225 Pages: 92-105

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] MVH in piRNA processing and gene silencing of retrotransposons2010

    • Author(s)
      Kuramochi-Miyagawa S, Watanabe T, Gotoh K, Takamatasu K, Chuma S, Kojima-Kita K, Shiromoto Y, Asada N, Toyoda A, Fujiyama A, Totoki Y, Shibata T, Kimura T, Nakatsuji N, Noce T, Sasaki H, Nakano T
    • Journal Title

      Genes Dev

      Volume: 24 Pages: 887-892

    • Related Report
      2011 Final Research Report 2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Metastable primordial germ cell-like state induced from mouse embryonic stem cells by Akt activation2010

    • Author(s)
      Yamano N, Kimura T, Watanabe-Kushima S, Shinohara T, Nakano T
    • Journal Title

      Biochem Biophys Res Commun

      Volume: 392 Pages: 311-316

    • Related Report
      2011 Final Research Report 2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Disabled-2 is required for mesoderm differentiation of murine embryonic stem cells2010

    • Author(s)
      Huang CL, Cheng JC, Kitajima K, Nakano T, Yeh CF, Chong KY, Tseng CP
    • Journal Title

      J Cell Physiol

      Volume: 225 Pages: 92-105

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] The TDRD9-MIWI2 complex is essential for piRNA-mediated retrotransposon silencing in the mouse male germline2009

    • Author(s)
      Shoji M, Tanaka T, Hosokawa M, Reuter M, Stark A, Kato Y, Kondoh G, Okawa K, Chujo, Suzuki T, Hata K, Martin S, Noce T, Kuramochi-Miyagawa S, Nakano T, Sasaki H, Pillai RS, Nakatsuji N, Chuma S
    • Journal Title

      Dev Cell

      Volume: 17 Pages: 775-787

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Gtsf1/ Cue110, a gene encoding a protein with two copies of a CHHC Zn-finger motif, is involved in spermatogenesis and retrotransposon suppression in murine testes2009

    • Author(s)
      Yoshimura T, Toyoda S, Kuramochi-Miyagawa S, Miyazaki T, Miyazaki S, Tashiro F, Yamato E, Nakano T, Miyazaki J
    • Journal Title

      Dev Biol

      Volume: 335 Pages: 216-217

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Associations between PIWI proteins and TDRD1/ MTR-1 are critical for integrated subcellular localization in murine male germ cells2009

    • Author(s)
      Kojima K, Kuramochi-Miyagawa S, Chuma S, Tanaka T, Nakatsuji N, Kimura T, Nakano T
    • Journal Title

      Genes Cells

      Volume: 14 Pages: 1155-1165

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] MILI, a piRNA binding protein, is required for germline stem cell self-renewal and appears to positively regulate translation2009

    • Author(s)
      Unhavaithaya Y, Hao Y, Beyret E, Yin H, Kuramochi-Miyagawa S, Nakano T, Lin H
    • Journal Title

      J Biol Chem

      Volume: 284 Pages: 6507-6519

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Increase of hematopoietic progenitor and suppression of endothelial gene expression by Runx1 expression during in vitro ES differentiation2009

    • Author(s)
      Sakai E, Kitajima K, Sato A, Nakano T
    • Journal Title

      Exp Hematol

      Volume: 37 Pages: 334-345

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Associations between PIWI proteins and TDRD1/MTR-1 are critical for integrated subcellular localization in murine male germ cells2009

    • Author(s)
      Kojima K, (5名), Nakano T
    • Journal Title

      Genes to Cells 14

      Pages: 1155-1165

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Increase of hematopoictic progenitor and suppression of endothelial gene expression by Runxl expression during in vitro ES differentiation2009

    • Author(s)
      Sakai E, Kitajima K, Sato A, Nakano T
    • Journal Title

      Experimental Hematology 37

      Pages: 334-345

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] The TDRD9-MIWI2 complex is essential for piRNA-mediated retrotransposon silenine in the mouse male eermline2009

    • Author(s)
      Shoji M, (13名), Nakano T, (4名)
    • Journal Title

      Developmental Cell 17

      Pages: 775-787

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Gtsfl/Cue110, a gene encoding a protein with two copies of a CHHC Zn-finger motif, is involved in spermatogenesis and retrotransposon suppression in murine testes2009

    • Author(s)
      Yoshimura T, (6名), Nakano T, Miyazaki J
    • Journal Title

      Developmental Biology 335

      Pages: 216-227

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] MILL, a piRNA binding protein, is required for germline stem cell self-renewal and annears to positively regulate translation2009

    • Author(s)
      Unhavaithaya Y, (4名), Nakano T, Lin H
    • Journal Title

      Journal of Biological Chemistry 284

      Pages: 6507-6519

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] MVH in piRNA processing and gene silencing of retrotransposons

    • Author(s)
      Kuramochi-Miyagawa S, (15名), Nakano T
    • Journal Title

      Genes and Development (in press)

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Metastable primordial germ cell-like state induced from mouse embryonic stem cells by Akt activation

    • Author(s)
      Yamano N, (3名), Nakano T
    • Journal Title

      Biochem Biophys Res Commun (in press)

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Presentation] DNA Methylation and Hydroxymethylation2011

    • Author(s)
      Nakano T
    • Organizer
      MBJS 2011
    • Place of Presentation
      Yokohama, Japan
    • Year and Date
      2011-12-16
    • Related Report
      2011 Final Research Report
  • [Presentation] DNA Methylation and Hydroxymethylation2011

    • Author(s)
      仲野徹
    • Organizer
      日本分子生物学会年会
    • Place of Presentation
      横浜(招待講演)
    • Year and Date
      2011-12-16
    • Related Report
      2011 Annual Research Report
  • [Presentation] DNA methylation control by PGC7/Stella2010

    • Author(s)
      仲野徹
    • Organizer
      BMB 2010
    • Place of Presentation
      神戸(招待講演)
    • Year and Date
      2010-12-07
    • Related Report
      2010 Annual Research Report
  • [Presentation] 細胞分化・がん化におけるエピジェネティクス制御2010

    • Author(s)
      仲野徹
    • Organizer
      JDDW2010
    • Place of Presentation
      横浜(招待講演)
    • Year and Date
      2010-10-15
    • Related Report
      2010 Annual Research Report
  • [Presentation] 幹細胞の未分化性とシグナル2010

    • Author(s)
      仲野徹
    • Organizer
      第69回日本癌学会
    • Place of Presentation
      大阪(招待講演)
    • Year and Date
      2010-09-23
    • Related Report
      2010 Annual Research Report
  • [Presentation] DNA methylation in Early Embryogenesis2010

    • Author(s)
      仲野徹
    • Organizer
      Epigenetics : New horizons in Japan and Scandinavia
    • Place of Presentation
      ストックホルム, スウェーデン(招待講演)
    • Year and Date
      2010-09-06
    • Related Report
      2010 Annual Research Report
  • [Presentation] Epigenetic Gene Regulation and GATA factors2009

    • Author(s)
      Nakano T
    • Organizer
      Tohoku University Global COE 1st International Sympsium
    • Place of Presentation
      Sendai, Japan
    • Year and Date
      2009-12-08
    • Related Report
      2011 Final Research Report
  • [Presentation] 発生・分化におけるエピジェネティクス制御2009

    • Author(s)
      仲野徹
    • Organizer
      日本免疫学会
    • Place of Presentation
      大阪市
    • Year and Date
      2009-12-03
    • Related Report
      2009 Annual Research Report
  • [Presentation] Epigenetic Gene Regulation and GATA factors2009

    • Author(s)
      Nakano T
    • Organizer
      International Society of Experimental Hematology
    • Place of Presentation
      Athens, Greek
    • Year and Date
      2009-09-11
    • Related Report
      2011 Final Research Report
  • [Presentation] Epigenetic gene regulation and GATA factors2009

    • Author(s)
      仲野徹
    • Organizer
      International Society of Experimental Hematology
    • Place of Presentation
      アテネ、ギリシャ
    • Year and Date
      2009-09-11
    • Related Report
      2009 Annual Research Report
  • [Presentation] DNA Methylation in Early Embryogenesis2009

    • Author(s)
      Nakano T
    • Organizer
      Epigenetics : New Horizons in Japan and Scandinavia
    • Place of Presentation
      Stockholm, Sweeden
    • Year and Date
      2009-09-06
    • Related Report
      2011 Final Research Report
  • [Presentation] DNA Methylation in Early Embryogenesis2009

    • Author(s)
      Nakano T
    • Organizer
      From Imprinting to the Epigenome
    • Place of Presentation
      Cambridge, UK
    • Year and Date
      2009-09-04
    • Related Report
      2011 Final Research Report
  • [Presentation] DNA methylation in early embryogenesis2009

    • Author(s)
      仲野徹
    • Organizer
      From Imprinting to the Epigenome
    • Place of Presentation
      ケンブリッジ、英国
    • Year and Date
      2009-09-04
    • Related Report
      2009 Annual Research Report
  • [Presentation] DNA methylation in early embryogenesis2009

    • Author(s)
      仲野徹
    • Organizer
      日本発生生物学会
    • Place of Presentation
      新潟市
    • Year and Date
      2009-05-29
    • Related Report
      2009 Annual Research Report

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Published: 2009-04-01   Modified: 2016-04-21  

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