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Atlas-based automated segmentation and anatomical identification of tubular and sheet structures from 3D medical images

Research Project

Project/Area Number 21300068
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Perception information processing/Intelligent robotics
Research InstitutionOsaka University

Principal Investigator

SATO Yoshinobu  大阪大学, 大学院・医学系研究科, 准教授 (70243219)

Co-Investigator(Kenkyū-buntansha) NAKAMOTO Masahiko  大阪大学, 医学系・研究科, 助教 (00380634)
HORI Masatoshi  大阪大学, 医学系・研究科, 助教 (00346206)
TOMIYAMA Noriyuki  大阪大学, 医学系・研究科, 教授 (50294070)
SUGANO Nobuhiko  大阪大学, 医学系・研究科, 寄附講座教授 (70273620)
NISHII Takashi  大阪大学, 医学系・研究科, 寄附講座准教授 (70304061)
Project Period (FY) 2009 – 2011
Project Status Completed (Fiscal Year 2011)
Budget Amount *help
¥18,330,000 (Direct Cost: ¥14,100,000、Indirect Cost: ¥4,230,000)
Fiscal Year 2011: ¥4,420,000 (Direct Cost: ¥3,400,000、Indirect Cost: ¥1,020,000)
Fiscal Year 2010: ¥5,330,000 (Direct Cost: ¥4,100,000、Indirect Cost: ¥1,230,000)
Fiscal Year 2009: ¥8,580,000 (Direct Cost: ¥6,600,000、Indirect Cost: ¥1,980,000)
Keywords統計形状モデル / 確率アトラス / CT画像 / セグメンテーション / 解剖学的ラベル付け / 腹部血管 / 肺葉間裂 / 関節軟骨 / 血管認識 / 大血管領域抽出 / 臓器領域抽出 / 最適経路探索 / 統計アトラス / 肝臓 / 門脈 / 予測モデル / 構造記述 / 分岐構造 / 薄面構造 / 解剖学的特徴 / 血管識別 / 肝血管
Research Abstract

A fully-automated segmentation system for anatomical identification of tube-like and sheet-like structures from 3D medical images has been developed based on statistical atlas representing the constraints of shapes and interrelations of the anatomical structures, which is constructed by statistical analysis of a number of patient anatomical ground truth datasets. Using the system, abdominal arteries/ veins and portal veins as tube-like structures and interlobar fissure and articular cartilage as sheet-like structures were automatically segmented and identified from 3D CT images.

Report

(4 results)
  • 2011 Annual Research Report   Final Research Report ( PDF )
  • 2010 Annual Research Report
  • 2009 Annual Research Report
  • Research Products

    (24 results)

All 2012 2011 2010 2009

All Journal Article (8 results) (of which Peer Reviewed: 8 results) Presentation (16 results)

  • [Journal Article] A Hessian-based filter for vascular segmentation of noisy hepatic CT scans2012

    • Author(s)
      oruzan AH, Zoroofi RA, Sato Y, Hori M
    • Journal Title

      International Journal of Computer Assisted Radiology and Surgery

      Volume: 7(2) Issue: 2 Pages: 199-205

    • DOI

      10.1007/s11548-011-0640-y

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Automated knowledge-based segmentation and analysis of the hip bones and cartilages using multi-slice CT data2012

    • Author(s)
      Baniasadipour, A.
    • Journal Title

      Imaging Science Jounal

      Volume: 59(5) Issue: 5 Pages: 253-266

    • DOI

      10.1179/1743131x10y.0000000012

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Abdominal multi-organ segmentation of CT images based on hierarchical spatial modeling of organ interrelations2012

    • Author(s)
      Okada, T.
    • Journal Title

      Abdominal Imaging : Computational and Clinical Applications, Lecture Notes in Computer Science

      Volume: 7029 Pages: 173-180

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Automated anatomical labeling of abdominal arteries from CT data based on optimal path finding between segmented organ and aorta regions2012

    • Author(s)
      Suzuki, Y.
    • Journal Title

      International Journal of Computer Assisted Radiology and Surgery

      Volume: 7,Supplement(in press)

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Automated Knowledge-Based Segmentation and Analysis of the Hip Bones and Cartilages using Multi-Slice CT Data2011

    • Author(s)
      A. Baniasadipour, R. A. Zoroofi, Y. Sato, T. Nishii
    • Journal Title

      Int. J. Imaging Science

      Volume: 59(5) Pages: 253-266

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Statistical construction of a Japanese male liver phantom for internal radionuclide dosimetry2010

    • Author(s)
      Mofrad FB
    • Journal Title

      Radiation Protection Dosimetry

      Volume: 141(2) Pages: 140-148

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Yoshinobu Sato A Hybrid Technique for Thickness-map Visualization of the Hip Cartilages in MRI2010

    • Author(s)
      Mahdieh Khanmohammadi
    • Journal Title

      IEICE Transactions (in press)

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A Hybrid Technique for Thickness-map Visualization of the Hip Cartilages in MRI2009

    • Author(s)
      Mahdieh Khanmohammadi, R. A. Zoroofi, T. Nishii, H. Tanaka, Y. Sato,
    • Journal Title

      A Hybrid Technique for Thickness-map Visualization of the Hip Cartilages in MRI

      Volume: 92(11) Pages: 2253-2263

    • NAID

      10026812210

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Presentation] 大血管と臓器領域間の最適経路探索に基づく多時相三次元腹部CT画像からの血管名自動対応付け2012

    • Author(s)
      鈴木裕紀
    • Organizer
      電子情報通信学会技術研究報告
    • Place of Presentation
      ぶんかテンブス館(沖縄県)
    • Year and Date
      2012-01-20
    • Related Report
      2011 Annual Research Report
  • [Presentation] 葉間裂強調処理と分葉統計形状モデルに基づく三次元胸部CT画像からの肺葉自動分割2012

    • Author(s)
      松尾奈緒美
    • Organizer
      電子情報通信学会
    • Place of Presentation
      那覇
    • Year and Date
      2012-01-19
    • Related Report
      2011 Final Research Report
  • [Presentation] Automated anatomical labeling of abdominal arteries from CT data based on optimal path finding between segmented organ and aorta regions2012

    • Author(s)
      Y. Suzuki
    • Organizer
      26^<th> International Congress and Exhibition(CARS2012)
    • Place of Presentation
      Pisa, Italy
    • Related Report
      2011 Final Research Report
  • [Presentation] Statistical Thickness Map Construction of the Hip Joint Cartilages in MR and CT Images2012

    • Author(s)
      P. R. Tabrizi
    • Organizer
      26^<th> International Congress and Exhibition(CARS2012)
    • Place of Presentation
      Pisa, Italy
    • Related Report
      2011 Final Research Report
  • [Presentation] 大血管と臓器領域間の最短経路探索に基づく多時相三次元腹部CT画像からの血管名自動対応付け2012

    • Author(s)
      岡田俊之
    • Organizer
      電子情報通信学会
    • Place of Presentation
      那覇
    • Related Report
      2011 Final Research Report
  • [Presentation] 肝血管本幹の統計アトラス構築とその自動血管識別への応用2010

    • Author(s)
      木西基
    • Organizer
      電子情報通信学会医用画像研究会
    • Place of Presentation
      理化学研究所(埼玉県)
    • Year and Date
      2010-09-03
    • Related Report
      2011 Final Research Report
  • [Presentation] 肝血管本幹の統計アトラス構築とその自動血管識別への応用2010

    • Author(s)
      木西基
    • Organizer
      電子情報通信学会
    • Place of Presentation
      理化学研究所(埼玉県)
    • Year and Date
      2010-09-03
    • Related Report
      2010 Annual Research Report
  • [Presentation] Optimal shape determination of guidewire for liver catheterization based on 3D vessel structure2010

    • Author(s)
      Hirayama S
    • Organizer
      2nd International Conference on Software Engineering and Data Mining(SEDM)
    • Place of Presentation
      Chengdu, China
    • Related Report
      2011 Final Research Report
  • [Presentation] Representation and evaluation of statistical prediction powers of neighboring organ shapes for construction of multi-organ statistical atlas2010

    • Author(s)
      Yoshida Y
    • Organizer
      2nd International Conference on Software Engineering and Data Mining(SEDM)
    • Place of Presentation
      Chengdu, China
    • Related Report
      2011 Final Research Report
  • [Presentation] Optimal shape determination of guidewire for liver catheterization based on 3D vessel structure2010

    • Author(s)
      Hirayama S
    • Organizer
      2nd International Conference on Software Engineering and Data Mining (SEDM)
    • Place of Presentation
      Chengdu, China
    • Related Report
      2010 Annual Research Report
  • [Presentation] Representation and evaluation of statistical prediction powers of neighboring organ shapes for construction of multi-organ statistical atlas2010

    • Author(s)
      Yoshida Y
    • Organizer
      2nd International Conference on Software Engineering and Data Mining (SEDM)
    • Place of Presentation
      Chengdu, China
    • Related Report
      2010 Annual Research Report
  • [Presentation] Analysis of Centerline Extraction in Three-Dimensional Scale Space-Extracting Centerline of Vessels in Hepatic Artery-2009

    • Author(s)
      Motoi Kinishi
    • Organizer
      ICNC' 09, FSKD' 09
    • Place of Presentation
      Tianjin, China
    • Year and Date
      2009-08-14
    • Related Report
      2011 Final Research Report
  • [Presentation] Analysis of Centerline Extraction in Three-Dimensional Scale Space… Extracting Centerline of Vessels in Hepatic Artery…2009

    • Author(s)
      Motoi Kinishi
    • Organizer
      ICNC'09, FSKD'09
    • Place of Presentation
      Tianjin, China
    • Year and Date
      2009-08-14
    • Related Report
      2009 Annual Research Report
  • [Presentation] Atlas-based automated preoperative planning for total hip arthloplasty Pre-congress educational workshop : Statistical shape modeling2009

    • Author(s)
      Yoshinobu Sato
    • Organizer
      CAOS 2009
    • Place of Presentation
      Boston, MA, USA
    • Year and Date
      2009-06-17
    • Related Report
      2009 Annual Research Report
  • [Presentation] 3次元スケール空間における血管構造抽出の解析-肝動脈血管分岐部における血管中心線の抽出-2009

    • Author(s)
      木西基
    • Organizer
      電気関係学会関西支部連合大会
    • Place of Presentation
      大阪
    • Related Report
      2011 Final Research Report
  • [Presentation] 3次元スケール空間における血管構造抽出の解析…肝動脈血管分岐部における血管中心線の抽出…2009

    • Author(s)
      木西基
    • Organizer
      電気関係学会関西支部連合大会
    • Place of Presentation
      大阪
    • Related Report
      2009 Annual Research Report

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Published: 2009-04-01   Modified: 2016-04-21  

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