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Elucidation of MHC polymorphism information in cynomolgus macaque(Macaca Fascicularis)

Research Project

Project/Area Number 21300155
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Laboratory animal science
Research InstitutionTokai University

Principal Investigator

SHHNA Takashi  東海大学, 医学部, 准教授 (00317744)

Co-Investigator(Kenkyū-buntansha) ANDO Asako  東海大学, 医学部, 准教授 (40101935)
TORII Ryuzo  滋賀医科大学, 動物生命科学研究センター, 教授 (50106647)
TSUCHIYA Hideaki  滋賀医科大学, 動物生命科学研究センター, 助教 (10378440)
ITOH Yasushi  滋賀医科大学, 医学部, 准教授 (90324566)
OGASAWARA Kazumasa  滋賀医科大学, 医学部, 教授 (20169163)
HOSOMICHI Kazuyoshi  国立遺伝学研究所, 総合遺伝研究系人類遺伝研究部門, 助教 (50420948)
OTA Masao  信州大学, 医学部, 准教授 (50115333)
Project Period (FY) 2009 – 2011
Project Status Completed (Fiscal Year 2011)
Budget Amount *help
¥17,160,000 (Direct Cost: ¥13,200,000、Indirect Cost: ¥3,960,000)
Fiscal Year 2011: ¥4,940,000 (Direct Cost: ¥3,800,000、Indirect Cost: ¥1,140,000)
Fiscal Year 2010: ¥4,940,000 (Direct Cost: ¥3,800,000、Indirect Cost: ¥1,140,000)
Fiscal Year 2009: ¥7,280,000 (Direct Cost: ¥5,600,000、Indirect Cost: ¥1,680,000)
Keywords遺伝育種 / カニクイザル / MHC / 再生医療 / 多型 / 薬剤感受性
Research Abstract

We developed a genotyping methods on Macaca fascicularis(Mafa) class I and class II genes by Sanger and next generation sequencing. Using the methods we discovered new MHC alleles, and estimated MHC haplotypes in Filipino population from genotyping of the 200 animals. Moreover, we characterized five homozygous and 43 heterozygous animals that have the most frequent MHC haplotype and 23 homozygous animals that have the other MHC haplotypes from a large scale screening of 1222 animals. In summary, we characterized the Macaca fascicularis MHC polymorphisms and constructed research base for medical research in this research.

Report

(4 results)
  • 2011 Annual Research Report   Final Research Report ( PDF )
  • 2010 Annual Research Report
  • 2009 Annual Research Report
  • Research Products

    (46 results)

All 2012 2011 2010 2009 Other

All Journal Article (21 results) (of which Peer Reviewed: 16 results) Presentation (23 results) Patent(Industrial Property Rights) (2 results) (of which Overseas: 1 results)

  • [Journal Article] Memory Immune Responses Against Pandemic 1(H1N1) 2009 Influenza Virus Induced by a Whole Particle Vaccine in Cynomolgus Monkeys Carrying Mafa-A1 052 : 022012

    • Author(s)
      Arikata M, Itoh Y, Okamatsu M, Maeda T, Shiina T, Tanaka K, Suzuki S, Nakayama M, Sakoda Y, Ishigaki H, Takada A, Ishida H, Soda K, Pham VL, Tsuchiya H, Nakamura S, Torii R, Shimizu T, Inoko H, Ohkubo I, Kida H, Ogasawara K
    • Journal Title

      PLoS ONE

      Volume: 7

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Application of high-resolution, massively parallel pyrosequencing for estimation of haplotypes and gene expression levels of swine leukocyte antigen (SLA) class I genes2012

    • Author(s)
      Kita YF, et al
    • Journal Title

      Immunogenetics

      Volume: 64 Pages: 187-199

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Establishment of exome sequencing of cynomolgus macaque(Macaca fascicularis)2011

    • Author(s)
      Suzuki S, Hosomichi K, Otabe K, Sakamoto K, Kurata M, Nomura M, Yamanaka H, Nakagawa H, Ota M, Inoko H, Inoue I, Shiina T
    • Journal Title

      DNA Polymorphism

      Volume: 19 Pages: 230-234

    • Related Report
      2011 Final Research Report
  • [Journal Article] Analysis of MHC class II gene polymorphisms(Mafa-DR-DQ genes) in Cynomolgus Macaques(Macaca fascicularis) originated from Philippine islands2011

    • Author(s)
      Ota M, Tanaka T, Katsuyama Y, Kita Y, Otabe K, Sakamoto K, Kurata M, Nomura M, Yamanaka H, Nakagawa H, Asamura H, Inoko H, Shiina T
    • Journal Title

      DNA Polymorphism

      Volume: 19 Pages: 47-49

    • NAID

      10029668569

    • Related Report
      2011 Final Research Report
  • [Journal Article] Comparative genome analysis of the major histocompatibility complex (MHC) class i B/C segments in primates elucidated by genomic sequencing in common marmoset (Callithrix jacchus)2011

    • Author(s)
      Shiina, T., Kono, A., Westphal, N., Suzuki, S., Hosomichi, K., Kita, Y.F, Roos, et al
    • Journal Title

      Immunogenetics

      Volume: 63:8 Issue: 8 Pages: 485-499

    • DOI

      10.1007/s00251-011-0526-8

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Establishment of exome sequencing of cvnomolgus macaque (Macaca fascicularis)2011

    • Author(s)
      Suzuki S, et al
    • Journal Title

      DNA polymorphism

      Volume: 19 Pages: 230-234

    • Related Report
      2011 Annual Research Report
  • [Journal Article] Analysis of MHC class II gene polymorphisms (Mafa-DR-DQ genes) in Cynomolgus Macaques (Macaca fascicularis) originated from Philippine islands2011

    • Author(s)
      Ota M, et al
    • Journal Title

      DNA polymorphism

      Volume: 19 Pages: 47-49

    • NAID

      10029668569

    • Related Report
      2011 Annual Research Report
  • [Journal Article] Development of MHC typing method and gene expression method using by next generation sequencer Roche 454 FLX2011

    • Author(s)
      Kita YF, et al
    • Journal Title

      DNA polymorphism

      Volume: 19 Pages: 223-229

    • Related Report
      2011 Annual Research Report
  • [Journal Article] Primordial Linkage of {beta}2-Microglobulin to the MHC2011

    • Author(s)
      Ohta Y, et al.
    • Journal Title

      J Immunol.

      Volume: 186 Pages: 3563-3571

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Study of Cynomolgus monkey(Macaca fascicularis) DRA polymorphism in four populations2010

    • Author(s)
      Aarnink A, Estrade L, Apoil PA, Kita YF, Saitou N, Shiina T, Blancher A
    • Journal Title

      Immunogenetics

      Volume: 62 Pages: 123-136

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Mitochondrial DNA diversity among three subpopulations of cynomolgus macaques(Macaca fascicularis) originating from the Indochinese region2010

    • Author(s)
      Shiina T, Tanaka K, Katsuyama Y, Otabe K, Sakamoto K, Kuratani M, Nomura M, Yamanaka H, Nakagawa H, Inoko H, Ota M
    • Journal Title

      Exp. Anim

      Volume: 59 Pages: 567-578

    • NAID

      130000419251

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Mitochondrial DNA diversity among three subpopulations of cynomolgus macaques (Macaca fascicularis) originating from the Indochinese region2010

    • Author(s)
      Shiina T, et al.
    • Journal Title

      Exp.Anim.

      Volume: 59 Pages: 567-578

    • NAID

      130000419251

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Haplotype and allele frequency differences for polymorphic Alu insertions at five loci and two HLA class II genes in Japanese and Caucasians2010

    • Author(s)
      Kulski JK, et al.
    • Journal Title

      Tissue Antigens

      Volume: 76 Pages: 35-47

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Study of Cynomolgus monkey (Macaca fascicularis) DRA polymorphism in four populations2010

    • Author(s)
      Aarnink A, et al
    • Journal Title

      Immunogenetics 62

      Pages: 123-136

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] MHC class I A loci polymorphism and diversity in three Southeast Asian populations of cynomolgus macaque2009

    • Author(s)
      Kita YF, Hosomichi K, Kohara S, Itoh Y, Ogasawara K, Tsuchiya H, Torii R, Inoko H, Blancher A, Kulski JK, Shiina T
    • Journal Title

      Immunogenetics

      Volume: 61 Pages: 635-648

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] The HLA genomic loci map : expression, interaction, diversity and disease2009

    • Author(s)
      Kulski Jk, et al
    • Journal Title

      Immunogenetics 61

      Pages: 257-270

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] MHC class I A loci polymorphism and diversity in three Southeast Asian populations of cynomolgus macaque.2009

    • Author(s)
      Kita YF, et al
    • Journal Title

      Immunogenetics 61

      Pages: 635-648

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A novel system of diverse NK cell receptors in primates2009

    • Author(s)
      Averdam A, et al
    • Journal Title

      Plos Genetics 10

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] BG1 has a major role in MHC-linked resistance to malignant lymphoma in the chicken2009

    • Author(s)
      Goto RM, et al
    • Journal Title

      Proc Natl Acad Sci USA 106

      Pages: 16740-16745

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Nomenclature report on the major histocompatibility complexes, genes, and alleles of non-human primate species

    • Author(s)
      Groot NG, Otting N, Robinson J, Blancher A, Lafont BA, Marsh SGE, 0' Connor DH, Shiina T, Walter L, Watkins DI, Bontrop RE
    • Journal Title

      Immunogenetics

      Volume: (In press)

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Study of cynomolgus monkey(Macaca fascicularis) MhcDRB polymorphism in four populations

    • Author(s)
      Blancher A, Aarnink A, Tanaka K, Ota M, Inoko H, Yamanaka H, Nakagawa H, Apoil PA, Shiina T
    • Journal Title

      Immunogenetics

      Volume: (In press)

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Presentation] カニクイザルMHC多型情報基盤と生物医学研究への展開、シンポジウムI「MHCからみた種内多様性と進化」2011

    • Author(s)
      椎名隆
    • Organizer
      第20回日本組織適合性学会大会
    • Place of Presentation
      ツインメッセ静岡
    • Year and Date
      2011-08-29
    • Related Report
      2011 Final Research Report
  • [Presentation] カニクイザルMHC多型情報基盤と生物医学研究への展開2011

    • Author(s)
      椎名隆
    • Organizer
      第20回日本組織適合性学会大会
    • Place of Presentation
      ツインメッセ静岡(招待講演)
    • Year and Date
      2011-08-29
    • Related Report
      2011 Annual Research Report
  • [Presentation] Elucidation of Genomic Structure and Diversity of the Macaca Fascicularis MHC2011

    • Author(s)
      Takashi Shiina, et al
    • Organizer
      SMBE2011
    • Place of Presentation
      京都大学
    • Year and Date
      2011-07-28
    • Related Report
      2011 Annual Research Report
  • [Presentation] Elucidation of Genomic Structure and Diversity of the Macaca Fascicularis MHC2011

    • Author(s)
      Shiina T, Suzuki S, Tanaka K, Yamanaka H, Nakagawa H, Ota M, Torii R, Ogasawara K, Inoko H, Blancher A
    • Organizer
      SMBE2011
    • Place of Presentation
      Kyoto University
    • Year and Date
      2011-07-27
    • Related Report
      2011 Final Research Report
  • [Presentation] 次世代シークエンサーを用いたカニクイザルにおける薬物代謝関連遺伝子内SNP検出2011

    • Author(s)
      鈴木進悟, ら
    • Organizer
      第58回日本実験動物学会
    • Place of Presentation
      タワーホール船堀
    • Year and Date
      2011-05-27
    • Related Report
      2011 Annual Research Report
  • [Presentation] 次世代シークエンサーを用いたカニクイザルにおける薬物代謝関連遺伝子内SNP検出2011

    • Author(s)
      鈴木進悟、小田部耕二、坂本憲吾、倉田昌明、野村護、山中久、中川博司、太田正穂、猪子英俊、椎名隆
    • Organizer
      第58回日本実験動物学会総会
    • Place of Presentation
      タワーホール船堀
    • Year and Date
      2011-05-25
    • Related Report
      2011 Final Research Report
  • [Presentation] 次世代シークエンサーを用いたカニクイザルにおけるExome変異検出法の確立2010

    • Author(s)
      鈴木進悟, ら
    • Organizer
      第33回日本分子生物学会年会
    • Place of Presentation
      神戸交際会議場(兵庫県)
    • Year and Date
      2010-12-09
    • Related Report
      2010 Annual Research Report
  • [Presentation] 次世代シークエンサーRoche FLXを用いたMHCタイピング法の試み2010

    • Author(s)
      北夕紀, ら
    • Organizer
      第33回日本分子生物学会年会
    • Place of Presentation
      神戸交際会議場(兵庫県)
    • Year and Date
      2010-12-09
    • Related Report
      2010 Annual Research Report
  • [Presentation] コモンマーモセットMHC領域のゲノム構造2010

    • Author(s)
      河野あつみ, ら
    • Organizer
      第33回日本分子生物学会年会
    • Place of Presentation
      神戸交際会議場(兵庫県)
    • Year and Date
      2010-12-08
    • Related Report
      2010 Annual Research Report
  • [Presentation] 次世代シークエンサーを用いたカニクイザルにおけるExome変異検出法の確立2010

    • Author(s)
      鈴木進悟、細道一善、小田部耕二、坂本憲吾、倉田昌明、野村護、山中久、中川博司、太田正穂、猪子英俊、井ノ上逸朗、椎名隆
    • Organizer
      第33回日本分子生物学会年会
    • Place of Presentation
      三島市民文化会館・ゆうゆうホール
    • Year and Date
      2010-11-18
    • Related Report
      2011 Final Research Report
  • [Presentation] 次世代シークエンサーを用いたカニクイザルにおけるExome変異検出法の確立2010

    • Author(s)
      鈴木進悟、細道一善、小田部耕二、坂本憲吾、倉田昌明、野村護、山中久、中川博司、太田正穂、猪子英俊、井ノ上逸朗、椎名隆
    • Organizer
      日本DNA多型学会第19回学術集会
    • Place of Presentation
      三島市民文化会館・ゆうゆうホール
    • Year and Date
      2010-11-18
    • Related Report
      2011 Final Research Report
  • [Presentation] 生物医学研究推進のためのフィリピン産カニクイザルMHC遺伝子の多型解析2010

    • Author(s)
      太田正穂、田中景子、勝山善彦、北夕紀、小田部耕二、坂本憲吾、倉田昌明、野村護、山中久、中川博司、浅村英樹、猪子英俊、椎名隆
    • Organizer
      第19回DNA多型学会
    • Place of Presentation
      三島市民文化会館・ゆうゆうホール
    • Year and Date
      2010-11-18
    • Related Report
      2011 Final Research Report
  • [Presentation] 次世代シークエンサーを用いたカニクイザルにおけるExome変異検出法の確立2010

    • Author(s)
      鈴木進悟, ら
    • Organizer
      日本DNA多型学会第19回学術集会
    • Place of Presentation
      三島市民文化会館(静岡県)
    • Year and Date
      2010-11-18
    • Related Report
      2010 Annual Research Report
  • [Presentation] 次世代シークエンサーRoche 454FLXを用いたMHCタイピング法の開発2010

    • Author(s)
      北夕紀, ら
    • Organizer
      日本DNA多型学会第19回学術集会
    • Place of Presentation
      三島市民文化会館(静岡県)
    • Year and Date
      2010-11-18
    • Related Report
      2010 Annual Research Report
  • [Presentation] 生物医学研究推進のためのフィリピン産カニクイザルMHCクラスII遺伝子(Mafa-DR-DQ)の多型解析2010

    • Author(s)
      太田正穂, ら
    • Organizer
      日本DNA多型学会第19回学術集会
    • Place of Presentation
      三島市民文化会館(静岡県)
    • Year and Date
      2010-11-18
    • Related Report
      2010 Annual Research Report
  • [Presentation] MHC全遺伝子ホモ接合体カニクイザルの特定2010

    • Author(s)
      椎名隆、北夕紀、田中景子、河野あづみ、鈴木進悟、細道一善、勝山善彦、土屋英明、小田部耕二、坂本憲吾、倉田昌明、野村護、山中久、中川博司、伊藤靖、太田正穂、猪子英俊、鳥居隆三、小笠原一誠
    • Organizer
      第19回日本組織適合性学会大会
    • Place of Presentation
      東京大学
    • Year and Date
      2010-09-18
    • Related Report
      2011 Final Research Report
  • [Presentation] コモンマーモセットMHCクラスI遺伝子(Caja-G)の遺伝的多様性2010

    • Author(s)
      河野あつみ, ら
    • Organizer
      第19回日本組織適合性学会大会
    • Place of Presentation
      東京大学本郷キャンパス(東京都)
    • Year and Date
      2010-09-18
    • Related Report
      2010 Annual Research Report
  • [Presentation] MHC全遺伝子ホモ接合体カニクイザルの特定2010

    • Author(s)
      椎名隆, ら
    • Organizer
      第19回 日本組織適合性学会大会
    • Place of Presentation
      東京大学本郷キャンパス(東京都)
    • Year and Date
      2010-09-18
    • Related Report
      2010 Annual Research Report
  • [Presentation] コモンマーモセットMHCクラスI遺伝子(Caja-G)の遺伝的多様性2010

    • Author(s)
      河野あつみ, ら
    • Organizer
      第19回 日本組織適合性学会大会
    • Place of Presentation
      東京大学本郷キャンパス(東京都)
    • Year and Date
      2010-09-18
    • Related Report
      2010 Annual Research Report
  • [Presentation] Development of personal genome analysis method on the entire HLA region2009

    • Author(s)
      Hosomichi K, Shiina T, Wang T, Kawata H, Inoko H, Inoue I
    • Organizer
      第32回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜(神奈川県)
    • Year and Date
      2009-12-09
    • Related Report
      2009 Annual Research Report
  • [Presentation] カニクイザル3集団におけるMHCクラスI遺伝子(Mafa-A)の多型性の比較2009

    • Author(s)
      北夕紀、田中景子、細道一善、小笠原一誠、鳥居隆三、猪子英俊、椎名隆
    • Organizer
      第18回日本組織適合性学会
    • Place of Presentation
      名古屋国際会議場
    • Year and Date
      2009-09-26
    • Related Report
      2011 Final Research Report
  • [Presentation] HLA領域のパーソナルゲノム解析法の開発2009

    • Author(s)
      細道一善、猪子英俊、河田寿子、井ノ上逸朗、椎名隆
    • Organizer
      第18回日本組織適合性学会大会
    • Place of Presentation
      名古屋国爪会議場(愛知県)
    • Year and Date
      2009-09-26
    • Related Report
      2009 Annual Research Report
  • [Presentation] HLA領域のパーソナルゲノム解析法の開発2009

    • Author(s)
      細道一善、椎名隆、王〓、河田寿子、猪子英俊、井ノ上逸朗
    • Organizer
      日本人類遺伝学会 第54回大会
    • Place of Presentation
      グランドプリンスホテル高輪(東京都)
    • Year and Date
      2009-09-25
    • Related Report
      2009 Annual Research Report
  • [Patent(Industrial Property Rights)] カニクイザルMHC全遺伝子ホモ接合体を作成するためのキット及び方法2011

    • Inventor(s)
      小笠原一誠、鳥居隆三、椎名隆
    • Industrial Property Rights Holder
      学校法人東海大学、国立大学法人滋賀医科大学
    • Filing Date
      2011-05-02
    • Related Report
      2011 Final Research Report
    • Overseas
  • [Patent(Industrial Property Rights)] カニクイザルMHC全遺伝子ホモ接合体を作成するためのキット及び方法2010

    • Inventor(s)
      椎名隆, 小笠原一誠, 鳥居隆三
    • Industrial Property Rights Holder
      東海大学, 滋賀医科大学
    • Filing Date
      2010-04-30
    • Related Report
      2010 Annual Research Report

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Published: 2009-04-01   Modified: 2017-10-13  

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