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Large-scale differential display system with vertebrate-common degenerate oligonucleotide primers

Research Project

Project/Area Number 21310044
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Risk sciences of radiation/Chemicals
Research InstitutionRakuno Gakuen University

Principal Investigator

TERAOKA Hiroki  酪農学園大学, 獣医学部, 教授 (50222146)

Co-Investigator(Kenkyū-buntansha) ENDOH Daiji  酪農学園大学, 獣医学群, 教授 (40168828)
IWATA Hisato  愛媛大学, 学内共同利用施設, 教授 (10271652)
Co-Investigator(Renkei-kenkyūsha) FURUKAWA Tatsuhiko  鹿児島大学, 医歯学総合研究科, 教授 (40219100)
HORAI Sawako  鳥取大学, 地域学部, 准教授 (60512689)
Project Period (FY) 2009 – 2011
Project Status Completed (Fiscal Year 2011)
Budget Amount *help
¥15,210,000 (Direct Cost: ¥11,700,000、Indirect Cost: ¥3,510,000)
Fiscal Year 2011: ¥4,550,000 (Direct Cost: ¥3,500,000、Indirect Cost: ¥1,050,000)
Fiscal Year 2010: ¥4,420,000 (Direct Cost: ¥3,400,000、Indirect Cost: ¥1,020,000)
Fiscal Year 2009: ¥6,240,000 (Direct Cost: ¥4,800,000、Indirect Cost: ¥1,440,000)
Keywordsオミックス / エコトキシコロジー / カワウ / ゼブラフィッシュ / ダイオキシン / ニワトリ
Research Abstract

To study possible impacts of environmental pollutants on gene expression in a variety of organisms, we developed a large-scale differential display system with primer sets that are common in 7 vertebrate species with detailed molecular background, based on degenerate oligonucleotide-primed PCR(DOP-PCR). Inverse repeat motif of 8 mer was found in most transcripts for 7 vertebrates examined from fish to primates and more than ten thousand motifs were commonly recognized in transcripts of these 7 species. Among these, we chose 275 common motifs that cover roughly 30% of transcripts throughout these species, making seven vertebrates-common DOP-PCR primers(common DOP primers). This system enabled us to find some genes responsive to 2, 3, 7, 8-tetrachlorodibenzo-p-dioxin(TCDD) in fetal livers of chicken and common cormorant.

Report

(4 results)
  • 2011 Annual Research Report   Final Research Report ( PDF )
  • 2010 Annual Research Report
  • 2009 Annual Research Report
  • Research Products

    (49 results)

All 2012 2011 2010 2009 Other

All Journal Article (17 results) (of which Peer Reviewed: 10 results) Presentation (29 results) Book (1 results) Remarks (2 results)

  • [Journal Article] Differential display system with vertebrate-common degenerate oligonucleotide primers : uncovering genes responsive to dioxin in avian embryonic liver2012

    • Author(s)
      Teraoka H, Ito S, Ikeda H, Kubota A, Elmagd M M A, Kitazawa T, Kim EY, Iwata H, Endoh D.
    • Journal Title

      Environ Sci Technol

      Volume: 46 Pages: 27-33

    • Related Report
      2011 Final Research Report
  • [Journal Article] Differential display system with vertebrate-common degenerate oligonucleotide primers: Uncovering genes responsive to dioxin in avian embryonic liver2012

    • Author(s)
      Teraoka, H.
    • Journal Title

      Environmental Science and Technology

      Volume: 46(1) Issue: 1 Pages: 27-33

    • DOI

      10.1021/es201085m

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Role of zebrafish cytochrome P450 CYP1C genes in the reduced mesencephalic vein blood flow caused by activation of AHR22011

    • Author(s)
      Kubota A, Stegeman JJ, Woodin BR, Iwanaga T, Harano R, Peterson RE, Hiraga T, Teraoka H.
    • Journal Title

      Toxicol Appl Pharmacol

      Volume: 253 Pages: 244-252

    • Related Report
      2011 Final Research Report
  • [Journal Article] Expression of two novel cytochrome P450 3A131 and 3A132 in liver and small intestine of domestic cats2011

    • Author(s)
      Honda K, Komatsu T, Koyama F, Kubota A, Kawakami K, Asakura H, Uno Y, Kitazawa T, Hiraga T, Teraoka H.
    • Journal Title

      J Vet Med Sci

      Volume: 73 Pages: 1489-1492

    • NAID

      130000861823

    • Related Report
      2011 Final Research Report
  • [Journal Article] Role of zebrafish cytochrome P450 CYP1C genes in the reduced mesencephalic vein blood flow caused by activation of AHR22011

    • Author(s)
      Kubota A, Stegeman JJ, Woodin BR, Iwanaga T, 他4名
    • Journal Title

      Toxicology and Applied Pharmacology

      Volume: 253 Pages: 244-252

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Expression of two novel cytochrome P450 3A131 and 3A132 in liver and small intestine of domestic cats2011

    • Author(s)
      Honda K, Komatsu T, Koyama F, Kubota A, Kawakami K, 他5名
    • Journal Title

      Journal of Veterinary Medical Science

      Volume: 73 Pages: 1489-1492

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Malformation of certain brain blood vessels caused by TCDD activation of Ahr2/Arnt1 signaling in developing zebrafish2010

    • Author(s)
      Teraoka H, Ogawa A, Kubota A, Stegeman JJ, Peterson RE, Hiraga T.
    • Journal Title

      Aquat Toxicol

      Volume: 99 Pages: 241-247

    • NAID

      120005761570

    • Related Report
      2011 Final Research Report
  • [Journal Article] Molecular cloning and expression of cytochrome P450 2D6 in the livers of domestic cats2010

    • Author(s)
      Komatsu T, Honda K, Kubota A, Kitazawa T, Hiraga T, Teraoka H.
    • Journal Title

      J Vet Med Sci

      Volume: 72 Pages: 1633-1636

    • NAID

      130000307682

    • Related Report
      2011 Final Research Report
  • [Journal Article] Molecular Cloning and Expression of Cytochrome P450 2D6 in the Liver of Domestic Cats2010

    • Author(s)
      Komatsu, T., et al.
    • Journal Title

      Journal of Veterinary Medical Science

      Volume: 72 Pages: 1633-1636

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Malformation of certain brain blood vessels caused by TCDD activation of Ahr2/Arnt1 signaling in developing zebrafish2010

    • Author(s)
      Teraoka, H., et al.
    • Journal Title

      Aquatic Toxicology

      Volume: 99 Pages: 241-247

    • NAID

      120005761570

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] M3 muscarinic receptors mediate positive inotropic responses…2009

    • Author(s)
      Kitazawa-T., et al.
    • Journal Title

      J.Pharmacol.Exp.Ther. 330

      Pages: 487-493

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A helminthological survey in the waterfowls including Ardeidae,…2009

    • Author(s)
      Yoshino-T., et al.
    • Journal Title

      J.Yamashina.Inst.Ornithol. 41

      Pages: 42-54

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article]2009

    • Author(s)
      藤田正一, ら
    • Journal Title

      魚類のP450酵素系(P450の分子生物学 第2版)(講談社)

      Pages: 195-208

    • Related Report
      2009 Annual Research Report
  • [Journal Article] Large-scale survey of mitochondrial D-loop of the Red-crowned Crane Grus japonensis in Hokkaido, Japan by convenient genotyping method

    • Author(s)
      Miura Y, Shiomi A, Shiraishi J, Makita K, Asakawa M, Kitazawa T, Hiraga T, Momose Y, Momose K, Masatomi H, Teraoka H.
    • Journal Title

      J Vet Med Sci

      Volume: (in press)

    • NAID

      130001879690

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Changes of Mercury Contamination in Red-Crowned Cranes, Grus japonensis, in East Hokkaido, Japan

    • Author(s)
      Teraoka H, Tagami Y, Kudo M, Miura Y, Okamoto E, Matsumoto F, Koga K, Uebayashi A, Shimura R, Inoue M, Momose K, Masatomi H, Kitazawa T, Hiraga T, Subramanian A.
    • Journal Title

      Arch Environ Contam Toxicol

      Volume: (in press)

    • Related Report
      2011 Final Research Report
  • [Journal Article] Changes of Mercury Contamination in Red-Crowned Cranes, Grusjaponensis, in East Hokkaido, Japan

    • Author(s)
      Teraoka H, Tagami Y, Kudo M, Miura Y, Okamoto E, 他10名
    • Journal Title

      Archives of Environmental Contamination and Toxicology

      Volume: (in press)

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Role of zebrafish cytochrome P450 CYP1C genes in the reduced mesencephalic vein 2 blood flow caused by activation of AHR2

    • Author(s)
      Kubota, A., et al.
    • Journal Title

      Toxicology and Applied Pharmacology

      Volume: (in press)

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Presentation] Quantification of pericardial edema using high-speed camera : Involvement of prostanoid signaling in pericardial edema in early larvae of zebrafish exposed to 2, 3, 7, 8-tetrachlorodibenzo-p-dioxin2012

    • Author(s)
      Teraoka H, Yamakoshi A, Okuno A, Kitazawa T.
    • Organizer
      51th Society of Toxicology Annual Meeting
    • Place of Presentation
      Moscone Center(San Francisco, CA, USA)
    • Year and Date
      2012-03-14
    • Related Report
      2011 Final Research Report
  • [Presentation] Quantification of pericardial edema using high-speed camera : Involvement of prostanoid signaling in pericardial edema in early larvae…2012

    • Author(s)
      Hiroki Teraoka, Ayumi Yamakoshi, Yuki Okuno, 他1名
    • Organizer
      51th Annual Meeting of Society of Toxicology
    • Place of Presentation
      San Francisco, USA Moscone Center
    • Year and Date
      2012-03-14
    • Related Report
      2011 Annual Research Report
  • [Presentation] 2008年から20011年の間に秋田および宮城に滞在したタンチョウの由来2011

    • Author(s)
      寺岡宏樹、三浦良彰、塩見彰、白石順也、岡本絵梨佳, 他2名
    • Organizer
      日本分子生物学会第34回年会
    • Place of Presentation
      横浜市、パシフィコ横浜
    • Year and Date
      2011-12-14
    • Related Report
      2011 Annual Research Report
  • [Presentation] ツル科鳥類のリアルタイムPCR法を用いた新規迅速性別判定法の開発2011

    • Author(s)
      三島隆生、寺岡宏樹、高瀬公三、水上圭二郎、矢吹映、大和修
    • Organizer
      第152回日本獣医学会学術集会
    • Place of Presentation
      堺市、大阪府立大学
    • Year and Date
      2011-09-21
    • Related Report
      2011 Annual Research Report
  • [Presentation] 北海道におけるタンチョウの水銀汚染の原因についての検討2011

    • Author(s)
      岡本絵梨佳, 久道萌, 北澤多喜雄, 寺岡宏樹, 水野直治, 古賀公也, 志村良治, 井上雅子, 百瀬邦和, 正富宏之, 中山翔太, 池中良徳, 石塚真由美
    • Organizer
      日本鳥学会2011年度大会
    • Place of Presentation
      大阪市立大学杉本キャンパス(大阪市)
    • Year and Date
      2011-09-18
    • Related Report
      2011 Final Research Report
  • [Presentation] 北海道におけるタンチョウの水銀汚染の原因についての検討2011

    • Author(s)
      岡本絵梨佳、久道萌、北澤多喜雄、寺岡宏樹、水野直治, 古賀公也, 他7名
    • Organizer
      日本鳥学会2011年度大会
    • Place of Presentation
      大阪市、大阪市立大学
    • Year and Date
      2011-09-18
    • Related Report
      2011 Annual Research Report
  • [Presentation] 北海道におけるタンチョウの水銀汚染について2011

    • Author(s)
      寺岡宏樹、岡本絵梨佳, 他2名
    • Organizer
      日本鳥学会2011年度大会
    • Place of Presentation
      大阪市、大阪市立大学
    • Year and Date
      2011-09-17
    • Related Report
      2011 Annual Research Report
  • [Presentation] ダイオキシンによるAhR/Arnt経路を介した発達中ゼブラフィッシュ脳血管走行の異常2011

    • Author(s)
      寺岡宏樹, 小川輝, 久保田彰, 北澤多喜雄, 平賀武夫
    • Organizer
      第50回日本先天異常学会
    • Place of Presentation
      シェーンバッハサボー(東京都千代田区)
    • Year and Date
      2011-07-22
    • Related Report
      2011 Final Research Report
  • [Presentation] ダイオキシンによるAhR/Arnt経路を介した発達中ゼブラフィッシュ脳血管走行の異常2011

    • Author(s)
      寺岡宏樹、小川輝、久保田彰、北澤多喜雄、平賀武夫
    • Organizer
      第50回日本先天異常学会
    • Place of Presentation
      東京都、砂防会館
    • Year and Date
      2011-07-22
    • Related Report
      2011 Annual Research Report
  • [Presentation] ダイオキシンによる発達中ゼブラフィッシュの鰓弓動脈循環障害と心臓周囲浮腫との関係2011

    • Author(s)
      山越あゆ美, 奥野悠樹, 平賀武夫, 北澤多喜雄, 寺岡宏樹
    • Organizer
      第38回日本トキシコロジー学会年会
    • Place of Presentation
      パシフィコ横浜(横浜市)
    • Year and Date
      2011-07-11
    • Related Report
      2011 Final Research Report
  • [Presentation] ダイオキシンによる発達中ゼブラフィッシュの鰓弓動脈循環障害と心臓周囲浮腫との関係2011

    • Author(s)
      山越あゆ美、奥野悠樹、平賀武夫、北澤多喜雄、寺岡宏樹
    • Organizer
      第38回日本トキシコロジー学会年会
    • Place of Presentation
      横浜市、パシフィコ横浜
    • Year and Date
      2011-07-11
    • Related Report
      2011 Annual Research Report
  • [Presentation] 2, 3, 7, 8-Tetrachlorodibenzo-p-dioxin responsive transcripts in avian embryonic liver, identified by large-scale differential display system with vertebrate-common degenerate oligonucleotide primers2011

    • Author(s)
      Teraoka H, Ito S, Ukai N, Kim E-Y, Iwata H, Kitazawa T, Hiraga T and Endoh D.
    • Organizer
      50th Society of Toxicology Annual Meeting
    • Place of Presentation
      Washington Convention Center(Washington, D. C., USA)
    • Year and Date
      2011-03-08
    • Related Report
      2011 Final Research Report
  • [Presentation] 2,3,7,8-Tetrachlorodibenzo-p-dioxin responsive transcripts in avian embryonic liver, identified by large-scale differential display system…2011

    • Author(s)
      Teraoka, H., et al.
    • Organizer
      50th Society of Toxicology Annual Meeting
    • Place of Presentation
      Washington, D.C., USA
    • Year and Date
      2011-03-08
    • Related Report
      2010 Annual Research Report
  • [Presentation] 動物たちからの警告-我々の愛しきセンチネル-2011

    • Author(s)
      寺岡宏樹
    • Organizer
      第25回日本中毒学会 東日本地方会
    • Place of Presentation
      北海道札幌市
    • Year and Date
      2011-01-08
    • Related Report
      2010 Annual Research Report
  • [Presentation] 脊椎動物共通プライマーを用いた大規模ディファレンシャル・ディスプレイ法によるダイオキシン応答遺伝子の探索2010

    • Author(s)
      鵜飼典佳, 遠藤大二, 池田晴喜, 伊藤知子, 伊東志野, 金恩英, 岩田久人, 北澤多喜雄、平賀武夫、寺岡宏樹
    • Organizer
      第150回日本獣医学会学術集会
    • Place of Presentation
      帯広畜産大学(北海道帯広市)
    • Year and Date
      2010-09-16
    • Related Report
      2011 Final Research Report
  • [Presentation] 脊椎動物共通プライマーを用いた大規模ディファレンシャル・ディスプレイ法によるダイオキシン応答遺伝子の探索2010

    • Author(s)
      鵜飼典佳, 遠藤大二, ら
    • Organizer
      第150回日本獣医学会学術集会
    • Place of Presentation
      北海道帯広市
    • Year and Date
      2010-09-16
    • Related Report
      2010 Annual Research Report
  • [Presentation] ザンビア共和国の鉱床活動による微量元素汚染の野生ラットへの影響2010

    • Author(s)
      濱田恭平, 池中良徳, 中山翔太, ら
    • Organizer
      第150回日本獣医学会学術集会
    • Place of Presentation
      北海道帯広市
    • Year and Date
      2010-09-16
    • Related Report
      2010 Annual Research Report
  • [Presentation] 発達期ゼブラフィッシュにおける早期浮腫評価系を用いたダイオキシンによる浮腫発生機構の検討2010

    • Author(s)
      寺岡宏樹, 河村幸浩, 大井啓希, 白石順也, 笹野憲吾, 北澤多喜雄, 平賀武夫
    • Organizer
      第37回日本中毒学会学術年会
    • Place of Presentation
      沖縄コンベンションセンター(沖縄県宜野湾市)
    • Year and Date
      2010-06-18
    • Related Report
      2011 Final Research Report
  • [Presentation] 発達期ゼブラフィッシュにおける早期浮腫評価系を用いたダイオキシンによる浮腫発生機構の検討2010

    • Author(s)
      寺岡宏樹, 河村幸浩, ら
    • Organizer
      第37回日本トキシコロジー学会学術年会
    • Place of Presentation
      沖縄県宜野湾市
    • Year and Date
      2010-06-18
    • Related Report
      2010 Annual Research Report
  • [Presentation] エコトキシコゲノミクスへの応用を目的とした半網羅的ディファレンシャル・ディスプレイ法2010

    • Author(s)
      伊東志野, 遠藤大二, 池田晴喜, 伊藤知子, 鵜飼典佳, 金恩英, 岩田久人, 北澤多喜雄, 平賀武夫, 寺岡宏樹
    • Organizer
      第37回日本中毒学会学術年会
    • Place of Presentation
      沖縄コンベンションセンター(沖縄県宜野湾市)
    • Year and Date
      2010-06-17
    • Related Report
      2011 Final Research Report
  • [Presentation] エコトキシコゲノミクスへの応用を目的とした半網羅的ディファレンシャル・ディスプレイ法2010

    • Author(s)
      伊東志野, 遠藤大二, 池田晴喜, ら
    • Organizer
      第37回日本トキシコロジー学会学術年会
    • Place of Presentation
      沖縄県宜野湾市
    • Year and Date
      2010-06-17
    • Related Report
      2010 Annual Research Report
  • [Presentation] 半網羅的ディファレンシャル・ディスプレイ法システムの構築2009

    • Author(s)
      寺岡宏樹, 池田晴喜, 伊藤知子1, 鵜飼典佳, 白石順也, 金恩英, 岩田久人, 平賀武夫、遠藤大二
    • Organizer
      第32回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜(横浜市)
    • Year and Date
      2009-12-10
    • Related Report
      2011 Final Research Report
  • [Presentation] 半網羅的ディファレンシャル・ディスプレイ法システムの構築2009

    • Author(s)
      寺岡宏樹, ら
    • Organizer
      第32回日本分子生物学会年会
    • Place of Presentation
      神奈川県横浜市
    • Year and Date
      2009-12-10
    • Related Report
      2009 Annual Research Report
  • [Presentation] AHR2-ARNT1 signalling-dependent deformities of vascular structures in prosencephalic artery in the zebrafish embryo exposed to TCDD2009

    • Author(s)
      Kubota A, Ogawa A, Stegeman JJ, Hiraga T and Teraoka H.
    • Organizer
      SETAC North America 30th Annual Meeting
    • Place of Presentation
      New Orleans Hilton Riverside(New Orleans, LA, USA)
    • Year and Date
      2009-11-20
    • Related Report
      2011 Final Research Report
  • [Presentation] Role of CYP1C genes in the reduced mesencephalic vein blood flow caused by 2, 3, 7, 8-tetrachlorodibenzo-pdioxin in the zebrafish embryo2009

    • Author(s)
      Kubota A, Harano R, Iwanaga T, Woodin BR, Stegeman JJ, Hiraga T and Teraoka H.
    • Organizer
      27th New England Membrane Enzyme Group(NUTMEG) Conference
    • Place of Presentation
      Woods Hole Oceanographic Institution(Woods Hole, MA, USA)
    • Year and Date
      2009-10-05
    • Related Report
      2011 Final Research Report
  • [Presentation] 発達期ゼブラフィッシュにおける早期浮腫評価系を用いたダイオキシンによる浮腫発生機構の検討2009

    • Author(s)
      河村幸浩, 笹野憲吾, 久保田彰, 平賀武夫, 寺岡宏樹
    • Organizer
      第15回小型魚類研究会
    • Place of Presentation
      名古屋大学野依記念学術交流館(名古屋市)
    • Year and Date
      2009-09-12
    • Related Report
      2011 Final Research Report
  • [Presentation] 新規differential display法の開発: 8種の脊椎動物における共通反復倒置配列を用いたdegenerate oligonucleotide-primed PCRモノプライマーの設計2009

    • Author(s)
      池田晴喜, 伊藤知子, 鵜飼典佳, 白石順也, 遠藤大二, 平賀武夫, 寺岡宏樹
    • Organizer
      第15回小型魚類研究会
    • Place of Presentation
      名古屋大学野依記念学術交流館(名古屋市)
    • Year and Date
      2009-09-12
    • Related Report
      2011 Final Research Report
  • [Presentation] ダイオキシンによる発達中ゼブラフィッシュの頭部循環障害における…2009

    • Author(s)
      寺岡宏樹, ら
    • Organizer
      第36回日本トキシコロジー学会学術年会
    • Place of Presentation
      岩手県盛岡市
    • Year and Date
      2009-07-07
    • Related Report
      2009 Annual Research Report
  • [Presentation] Role of cytochrome P450 1C genes in the reduced mesencephalic…2009

    • Author(s)
      Kubota-A., et al.
    • Organizer
      15th International Symposium on Pollutants Responses in Marine Organisms
    • Place of Presentation
      ボルドー(フランス)(●)
    • Related Report
      2009 Annual Research Report
  • [Book] 魚類のP450酵素系.「P450の分子生物学第2版」2009

    • Author(s)
      藤田正一, 板倉隆夫, 石塚真由美, 寺岡宏樹
    • Publisher
      講談社
    • Related Report
      2011 Final Research Report
  • [Remarks]

    • URL

      http://dop.ver2.asia/login

    • Related Report
      2011 Final Research Report
  • [Remarks]

    • URL

      http://dop.ver2.asia/login

    • Related Report
      2011 Annual Research Report

URL: 

Published: 2009-04-01   Modified: 2016-04-21  

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