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Functional analysis of genes associated with miRNA expression

Research Project

Project/Area Number 21310123
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field 基礎ゲノム科学
Research InstitutionThe University of Tokyo

Principal Investigator

UI-TEI Kumiko  東京大学, 大学院・理学系研究科, 准教授 (50213327)

Co-Investigator(Renkei-kenkyūsha) NISHI Kenji  東京大学, 大学院・理学系研究科, 助教 (50466801)
NAITO Yuki  ライフサイエンスデータベース統合センター, 特任助教 (60451829)
Project Period (FY) 2009 – 2012
Project Status Completed (Fiscal Year 2012)
Budget Amount *help
¥17,160,000 (Direct Cost: ¥13,200,000、Indirect Cost: ¥3,960,000)
Fiscal Year 2012: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Fiscal Year 2011: ¥4,160,000 (Direct Cost: ¥3,200,000、Indirect Cost: ¥960,000)
Fiscal Year 2010: ¥4,940,000 (Direct Cost: ¥3,800,000、Indirect Cost: ¥1,140,000)
Fiscal Year 2009: ¥6,370,000 (Direct Cost: ¥4,900,000、Indirect Cost: ¥1,470,000)
Keywordsゲノム調節 / microRNA / miRNA / 遺伝子 / noncoding RNA / 発現調節 / プロセシング / RNA結合タンパク質 / 2本鎖RNA結合タンパク質 / ADAR
Research Abstract

In this study, we first developed a high-throughput screening method to identify microRNA (miRNA) which maturation is inhibited at the processing steps, and found several candidate miRNAs. Second, we examined the effects of adenosine deaminases acting on RNAs (ADARs) on miRNA processing, and identified novel 48 editing sites in 24 miRNAs. Each ADAR isoform was considered to inhibit the processing of different miRNAs.

Report

(5 results)
  • 2012 Annual Research Report   Final Research Report ( PDF )
  • 2011 Annual Research Report
  • 2010 Annual Research Report
  • 2009 Annual Research Report
  • Research Products

    (135 results)

All 2013 2012 2011 2010 2009 Other

All Journal Article (40 results) (of which Peer Reviewed: 39 results,  Open Access: 2 results) Presentation (74 results) (of which Invited: 1 results) Book (16 results) Remarks (5 results)

  • [Journal Article] Human TNRC6A is an Argonaute-navigator protein for microRNA-mediated gene silencing in the nucleus.2013

    • Author(s)
      Nishi K, Nishi A, Nagasawa T, Ui-Tei K.
    • Journal Title

      RNA

      Volume: vol.19 Pages: 17-35

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Designing functional siRNA with reduced off-target effects."siRNA Design"2013

    • Author(s)
      Naito Y, Ui-Tei K.
    • Journal Title

      Methods Mol. Biol.

      Volume: vol.942 Pages: 57-68

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] IFPA meeting 2012 workshop report I: Comparative placentation and animal models, advanced techniques in placental histopathology, human pluripotent stem cells as a model for trophoblast differentiation2013

    • Author(s)
      Ackerman WE 4th, Carter AM, De Mestre AM, Golos TG, Jeschke U, Kusakabe K, Laurent LC, Parast MM, Roberts RM, Robinson JM, Rutherford J, Soma H, Takizawa T, Ui-Tei K, Las GE.
    • Journal Title

      Placenta

      Volume: vol.34

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Distinguishable In Vitro Binding Mode of Monomeric TRBP and Dimeric PACT with siRNA.2013

    • Author(s)
      Tomoko Takahashi
    • Journal Title

      PLoS ONE

      Volume: in press

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Human TNRC6A is an Argonaute-navigator protein for microRNA-mediated gene silencing in the nucleus.2013

    • Author(s)
      Nishi K, Nishi A, Nagasawa T, Ui-Tei K.
    • Journal Title

      RNA

      Volume: 19 Issue: 1 Pages: 17-35

    • DOI

      10.1261/rna.034769.112

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Designing functional siRNA with reduced off-target effects.2013

    • Author(s)
      Naito Y, Ui-Tei K.
    • Journal Title

      Methods Mol. Biol.

      Volume: 942 Pages: 57-68

    • DOI

      10.1007/978-1-62703-119-6_3

    • ISBN
      9781627031189, 9781627031196
    • Related Report
      2012 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] IFPA meeting 2012 workshop report I: Comparative placentation and animal models, advanced techniques in placental histopathology, human pluripotent stem cells as a model for trophoblast differentiation2013

    • Author(s)
      Ackerman WE 4th
    • Journal Title

      Placenta

      Volume: 34

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Stability of miRNA 5’ terminal and seed regions is correlated with experimentally observed miRNA-mediated silencing efficacy.2013

    • Author(s)
      Naoki Hibio
    • Journal Title

      Sci. Rep.

      Volume: 2 Issue: 1 Pages: 996-996

    • DOI

      10.1038/srep00996

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] sdRNA: siRNA with a DNA seed for an efficient and target-gene specific RNA interference.2013

    • Author(s)
      Kumiko Ui-Tei
    • Journal Title

      Gene Technology

      Volume: 1 Pages: 102-102

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Stability of miRNA 5' terminal and seed regions is correlated with experimentally observed miRNA-mediated silencing efficacy.2012

    • Author(s)
      Hibio N, Hino K, Shimizu E, Nagata Y, Ui-Tei K.
    • Journal Title

      Sci. Rep.

      Volume: vol.2 Pages: 996-996

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] sdRNA: siRNA with a DNA seed for an efficient and target-gene specific RNA interference.2012

    • Author(s)
      Ui-Tei K.
    • Journal Title

      Gene Technology

      Volume: vol.1 Pages: 102-102

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] siRNA design software for a target gene-specific RNA interference.2012

    • Author(s)
      Naito Y, Ui-Tei K
    • Journal Title

      Front. Genet.

      Volume: vol.3 Pages: 102-102

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Thermodynamic control of small RNA-mediated gene silencing.2012

    • Author(s)
      Ui-Tei K, Nishi K, Takahashi T, Nagasawa T.
    • Journal Title

      Front. Genet

      Volume: vol.3 Pages: 101-101

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] siRNA design software for a target gene-specific RNA interference.2012

    • Author(s)
      Yuki Naito
    • Journal Title

      Front. Genet.

      Volume: 3 Pages: 102-102

    • DOI

      10.3389/fgene.2012.00102

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Thermodynamic control of small RNA-mediated gene silencing.2012

    • Author(s)
      Kumiko Ui-Tei
    • Journal Title

      Front. Genet.

      Volume: 3 Pages: 101-101

    • DOI

      10.3389/fgene.2012.00101

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] E-cadherin is transcriptionally activated via suppression of ZEB1 transcriptional repressor by small RNA-mediated gene silencing.2011

    • Author(s)
      Mazda M, Nishi K, Naito Y, Ui-Tei K.
    • Journal Title

      PLoSONE

      Volume: vol.6

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Enhanced specificity of HPV16E6E7 siRNA by RNA-DNA chimera modification.2011

    • Author(s)
      Yamato K, Egawa K, Endo S, Ui-Tei K, Yamada T, Saigo K, Hyodo I, Kiyano T, Nakagawa I.
    • Journal Title

      Cancer Gene Ther.

      Volume: vol.18 Pages: 587-597

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Lacdinac (Galnacss1-4glcnac) Contributes to Self-Renewal of Mouse Embryonic Stem Cells by Regulating LIF/STAT3Signaling.2011

    • Author(s)
      Sasaki N, Shinomi M, Hirano K, Ui-Tei K, Nishihara S.
    • Journal Title

      Stem Cells

      Volume: vol.29 Pages: 641-650

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] E-cadherin is transcriptionally activated via suppression of ZEB1 transcriptional repressor by small RNA-mediated gene silencing.2011

    • Author(s)
      Mazda M. et al.
    • Journal Title

      PLoS ONE

      Volume: 6 Issue: 12 Pages: e28688-e28688

    • DOI

      10.1371/journal.pone.0028688

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Enhanced specificity of HPV16 E6E7 siRNA by RNA-DNA chimera modification.2011

    • Author(s)
      Yamato K. et al.
    • Journal Title

      Cancer Gene Ther.

      Volume: 18 Issue: 8 Pages: 587-597

    • DOI

      10.1038/cgt.2011.28

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Lacdinac (Galnacβ1-4glcnac) Contributes to Self-Renewal of Mouse Embryonic Stem Cells by Regulating LIF/STAT3 Signaling.2011

    • Author(s)
      Sasaki N. et al.
    • Journal Title

      Stem Cells

      Volume: 29 Issue: 4 Pages: 641-650

    • DOI

      10.1002/stem.615

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Lacdinac (Galnacss1-4glcnac) Contributes to Self-Renewal of Mouse Embryonic Stem Cells by Regulating LIF/STAT3 Signaling2011

    • Author(s)
      Sasaki, N.
    • Journal Title

      Stem Cells

      Volume: 29 Pages: 641-650

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Robust andPhotocontrollable DNA Capsules Using Azobenzenes.2010

    • Author(s)
      Tanaka F, Mochizuki T, Liang X, Asanuma H, Tanaka S, Suzuki K, Kitamura SI, Nishikawa A, Ui-Tei K, Hagiya M.
    • Journal Title

      Nano Lett.

      Volume: vol.10 Pages: 3560-3565

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Basic and clinical studies on functional RNA molecules for advanced medical technologies.2010

    • Author(s)
      Takizawa T, Gemma A, Ui-Tei K, Aizawa Y, Sadovsky Y, Robinson JM, Seike M, Miyake K.
    • Journal Title

      J. Nippon Med. Sch.

      Volume: vol. 77 Pages: 71-79

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Sunspot,a link between Wingless signaling and endoreplication in Drosophila.2010

    • Author(s)
      Taniue K, Nishida A, Hamada F, Sugie A, Oda T, Ui-Tei K, Tabata T, Akiyama T.
    • Journal Title

      Development

      Volume: vol.137 Pages: 1755-1764

    • Related Report
      2012 Final Research Report
  • [Journal Article] Gene expression of Spag6 in chick central nervous system.2010

    • Author(s)
      Hamada T, Teraoka M, Imaki J, Ui-Tei K, Ladherc R.K, Asahara T
    • Journal Title

      Anat. Histol. Embryol.

      Volume: vol.39 Pages: 227-32

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Robust and Photo-controllable DNA Capsules Using Azobenzenes2010

    • Author(s)
      Tanaka, F.
    • Journal Title

      Nano Lett.

      Volume: 10 Pages: 3560-3565

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Basic and clinical studies on functional RNA molecules for advanced medical technologies2010

    • Author(s)
      Takizawa, T.
    • Journal Title

      J.Nippon Med.Sch.

      Volume: 77 Pages: 71-79

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Sunspot, a link between Wingless signaling and endoreplication in Drosophila2010

    • Author(s)
      Taniue, K.
    • Journal Title

      Development

      Volume: 137 Pages: 1755-1764

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Gene expression of Spag6 in chick central nervous system2010

    • Author(s)
      Hamada, T.
    • Journal Title

      Anat.Histol.Embryol.

      Volume: 39 Pages: 227-232

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Reduced base-base interactions between the DNA seed and RNA target are the major determinants of a significant reduction in the off-target effect due to DNA-seed-containing siRNA2010

    • Author(s)
      Ui-Tei, K.
    • Journal Title

      Proceedings of the 2009 Micro-NanoMechatronics and Human Science (MHS2009)

      Pages: 298-304

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Functional shRNA expression system with reduced off-target effects2010

    • Author(s)
      Naito, Y.
    • Journal Title

      Proceedings of the 2009 Micro-NanoMechatronics and Human Science (MHS2009)

      Pages: 291-297

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Gene expression of Spag6 in chick central nervous system.2010

    • Author(s)
      Hamada, T.
    • Journal Title

      Anatomia, Histologia, Embryogia (In press,印刷中)

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] siDirect 2.0: updated software for designing functional siRNA with reduced seed-dependent off-target effect.2009

    • Author(s)
      Naito Y, Yoshimura J, Morishita S, Ui-Tei K.
    • Journal Title

      BMC Bioinformatics

      Volume: vol.10 Pages: 392-392

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Reduced base-base interactions between the DNA seed and RNA target are themajor determinants of a significant reduction in the off-target effect due to DNA-seed-containing siRNA.2009

    • Author(s)
      Ui-Tei K, Nishi K, Naito Y, Zenno S, Juni A, Saigo K.
    • Journal Title

      Proceedings of the 2009 Micro-NanoMechatronics and Human Science(MHS2009)

      Pages: 298-304

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Functional shRNA expression system with reduced off-target effects.2009

    • Author(s)
      Naito Y, Nishi K, Juni A, Ui-Tei K.
    • Journal Title

      Proceedings of the2009 Micro-NanoMechatronics and Human Science (MHS2009)

      Pages: 291-297

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Experimental validation of published siRNA design algorithms.2009

    • Author(s)
      Naito Y, Saigo K, Ui-Tei K.
    • Journal Title

      Small Interfering RNA: New Research

      Pages: 185-194

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Bipartite roles of the central region of the siRNA guide strand in RNA interference due to modified siRNA with a DNA seed arm.2009

    • Author(s)
      Ui-Tei K, Naito Y, Zenno S, Nishi K, Juni A, Tanaka A, Saigo K.
    • Journal Title

      Research Advances in Nucleic Acids Research

      Volume: vol. 3 Pages: 1-17

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] siDirect 2.0 : updated software for designing functional siRNA with reduced seed-dependent off-target effect.2009

    • Author(s)
      Naito, Y.
    • Journal Title

      BMC Bioinformatics 10

      Pages: 392-392

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Bipartite roles of the central region of the siRNA guide strand in RAN interference due to modified siRNA with a DNA seed arm.2009

    • Author(s)
      Ui-Tei, K.
    • Journal Title

      Res. Adv. in Nucleic Acids Research 3

      Pages: 1-17

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Presentation] Human TNRC6A recruits Argonaute associated small RNA into the nucleus to lead RNA silencing2012

    • Author(s)
      Kenji Nishi, Ai Nishi, Tatsuya Nagasawa, Kumiko Ui-Tei
    • Organizer
      第35回日本分子生物学会年会
    • Place of Presentation
      福岡国際会議場・マリンメッセ福岡
    • Year and Date
      2012-12-14
    • Related Report
      2012 Final Research Report
  • [Presentation] Next generation sequencing analysis of miRNA editing by adenosine deaminase acting on RNA2012

    • Author(s)
      Rintaro Ishii, Yutaka Suzuki, Shinji Kondo, Mariko Okada, Kenji Nishi ,Kumiko Ui-Tei
    • Organizer
      第35回 日本分子生物学会年会
    • Place of Presentation
      福岡国際会議場・マリンメッセ福岡
    • Year and Date
      2012-12-14
    • Related Report
      2012 Final Research Report
  • [Presentation] Thermodynamic stability in base-pairingregulates the efficiency of small RNA-mediated gene silencing2012

    • Author(s)
      Naoki Hibio, Kimihiro Hino, Eigo Shimizu, Yoshiro Nagata ,Kumiko Ui-Tei
    • Organizer
      第35回日本分子生物学会年会
    • Place of Presentation
      福岡国際会議場・マリンメッセ福岡
    • Year and Date
      2012-12-12
    • Related Report
      2012 Final Research Report
  • [Presentation] Disco-interacting protein 2 (DIP2) regulates guidance of sister axons in the Drosophila mushroom body2012

    • Author(s)
      Yuhei Nitta, Kazumichi Shimizu, Maki Otsubo, Kenji Nishi, Kumiko Ui-Tei, Tetsuya Tabata
    • Organizer
      第35回日本分子生物学会年会
    • Place of Presentation
      福 岡国際会議場・マリンメッセ福岡
    • Year and Date
      2012-12-12
    • Related Report
      2012 Final Research Report
  • [Presentation] Distinguishable In Vitro siRNA-Binding Mechanisms of TRBPand PACT2012

    • Author(s)
      Tomoko Takahashi, Kenji Nishi, Shuhei Zenno ,Kumiko Ui-Tei
    • Organizer
      第35回日本分子生物学会年会
    • Place of Presentation
      福岡国際会議場・マリン メッセ福岡
    • Year and Date
      2012-12-11
    • Related Report
      2012 Final Research Report
  • [Presentation] Microarray analysis of non-negligible effect ofendogenous miRNAs on exogenous miRNA-mediated silencing activity2012

    • Author(s)
      Eigo Shimizu, Naoki Hibio, Yoshiro Nagata ,Kumiko Ui-Tei
    • Organizer
      第35回日 本分子生物学会年会
    • Place of Presentation
      福岡国際会議場・マリンメッセ福岡
    • Year and Date
      2012-12-11
    • Related Report
      2012 Final Research Report
  • [Presentation] Development of high-throughput screening method to identify microRNA which maturation is inhibited at the processing steps2012

    • Author(s)
      Kimihiro Hino, Eigo Shimizu, Kumiko Ui-Tei
    • Organizer
      第35回日本分子生物学会年会
    • Place of Presentation
      福岡国際会議場・マリンメッセ福岡
    • Year and Date
      2012-12-11
    • Related Report
      2012 Final Research Report
  • [Presentation] Target gene-specific RNAi for placental research.2012

    • Author(s)
      Kumiko Ui-Tei
    • Organizer
      International Federation of Placental Associations (IFPA) 2012 Hiroshima Meeting
    • Place of Presentation
      International Conference Center Hiroshima
    • Related Report
      2012 Final Research Report
  • [Presentation] Distinguishable In Vitro Binding Mode of TRBP and PACT with siRNA2012

    • Author(s)
      Tomoko Takahashi, Kenji Nishi, Shuhei Zenno ,Kumiko Ui-Tei
    • Organizer
      RNA Sciences in Cell and Developmental Biology II
    • Place of Presentation
      RIKEN CDB
    • Related Report
      2012 Final Research Report
  • [Presentation] 形質膜におけるリン脂質動態解析-ショウジョウバエ培養細胞をモデルとして2012

    • Author(s)
      芦本徹
    • Organizer
      第85回日本生化学会大会
    • Place of Presentation
      福岡国際会議場・マリンメッセ福岡(福岡)
    • Related Report
      2012 Annual Research Report
  • [Presentation] Human TNRC6A recruits Argonaute associated small RNA into the nucleus to lead RNA silencing2012

    • Author(s)
      Kenji Nishi
    • Organizer
      第35回日本分子生物学会年会
    • Place of Presentation
      福岡国際会議場・マリンメッセ福岡(福岡)
    • Related Report
      2012 Annual Research Report
  • [Presentation] Next generation sequencing analysis of miRNA editing by adenosine deaminase acting on RNA2012

    • Author(s)
      Rintaro Ishii
    • Organizer
      第35回日本分子生物学会年会
    • Place of Presentation
      福岡国際会議場・マリンメッセ福岡(福岡)
    • Related Report
      2012 Annual Research Report
  • [Presentation] Thermodynamic stability in base-pairing regulates the efficiency of small RNA-mediated gene silencing2012

    • Author(s)
      Naoki Hibio
    • Organizer
      第35回日本分子生物学会年会
    • Place of Presentation
      福岡国際会議場・マリンメッセ福岡(福岡)
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] Disco-interacting protein 2 (DIP2) regulates guidance of sister axons in the Drosophila mushroom body2012

    • Author(s)
      Yuhei Nitta
    • Organizer
      第35回日本分子生物学会年会
    • Place of Presentation
      福岡国際会議場・マリンメッセ福岡(福岡)
    • Related Report
      2012 Annual Research Report
  • [Presentation] Distinguishable In Vitro siRNA-Binding Mechanisms of TRBP and PACT2012

    • Author(s)
      Tomoko Takahashi
    • Organizer
      第35回日本分子生物学会年会
    • Place of Presentation
      福岡国際会議場・マリンメッセ福岡(福岡)
    • Related Report
      2012 Annual Research Report
  • [Presentation] Microarray analysis of non-negligible effect of endogenous miRNAs on exogenous miRNA-mediated silencing activity2012

    • Author(s)
      Eigo Shimizu
    • Organizer
      第35回日本分子生物学会年会
    • Place of Presentation
      福岡国際会議場・マリンメッセ福岡
    • Related Report
      2012 Annual Research Report
  • [Presentation] Development of high-throughput screening method to identify microRNA which maturation is inhibited at the processing steps2012

    • Author(s)
      Kimihiro Hino
    • Organizer
      第35回日本分子生物学会年会
    • Place of Presentation
      福岡国際会議場・マリンメッセ福岡(福岡)
    • Related Report
      2012 Annual Research Report
  • [Presentation] 次世代シーケンサーを用いたADARによるmiRNAエディティングの網羅的解析2012

    • Author(s)
      石井 倫太郎
    • Organizer
      東京大学GCOE『ゲノム情報ビッグバンから読み解く生命圏』ワークショップ2012
    • Place of Presentation
      東京大学柏キャンパス(千葉)
    • Related Report
      2012 Annual Research Report
  • [Presentation] Target gene-specific RNAi for placental research.2012

    • Author(s)
      Kumiko Ui-Tei
    • Organizer
      International Federation of Placental Associations (IFPA) 2012 Hiroshima Meeting
    • Place of Presentation
      International Conference Center Hiroshima(広島)
    • Related Report
      2012 Annual Research Report
  • [Presentation] 核内機能性non-coding RNAの分解に関与するRNA結合蛋白質の同定2012

    • Author(s)
      越智 晴香
    • Organizer
      日本アイソトープ協会 エンライトニングセミナー
    • Place of Presentation
      東京理科大学・森戸記念館(東京)
    • Related Report
      2012 Annual Research Report
  • [Presentation] アデノシンデアミナーゼによるmiRNA エディティングの網羅的解析2012

    • Author(s)
      石井 倫太郎
    • Organizer
      第12回 東京大学生命科学シンポジウム 2012 BIO UT
    • Place of Presentation
      東京大学・山上会館(東京)
    • Related Report
      2012 Annual Research Report
  • [Presentation] 細胞内miRNAによる遺伝子発現制御の外来性miRNA導入による摂動解析2012

    • Author(s)
      清水 英悟
    • Organizer
      第12回 東京大学生命科学シンポジウム 2012 BIO UT
    • Place of Presentation
      東京大学・山上会館
    • Related Report
      2012 Annual Research Report
  • [Presentation] 核内機能性non-coding RNAの分解に関与するRNA結合蛋白質の同定2012

    • Author(s)
      越智 晴香
    • Organizer
      第12回 東京大学生命科学シンポジウム 2012 BIO UT
    • Place of Presentation
      東京大学・山上会館(東京)
    • Related Report
      2012 Annual Research Report
  • [Presentation] Distinguishable In Vitro Binding Mode of TRBP and PACT with siRNA2012

    • Author(s)
      Tomoko Takahashi
    • Organizer
      RNA Sciences in Cell and Developmental Biology II
    • Place of Presentation
      RIKEN Center for Developmental Biology(兵庫)
    • Related Report
      2012 Annual Research Report
  • [Presentation] 核内RNAサイレンシングはヒトTNRC6A/GW182によるArgonauteの核内移行により引き起こされる2011

    • Author(s)
      西賢二、西愛、程久美子
    • Organizer
      第34回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜
    • Year and Date
      2011-12-16
    • Related Report
      2012 Final Research Report
  • [Presentation] Comparative analysis of siRNA binding patterns of dsRNA bindingproteins, TRBP and PACT2011

    • Author(s)
      Tomoko Takahashi, Kenji Nishi, Shuhei Zenno ,Kumiko Ui-Tei
    • Organizer
      第34回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横 浜
    • Year and Date
      2011-12-16
    • Related Report
      2012 Final Research Report
  • [Presentation] miRNAによるサイレンシング効率を決定する要因の同定2011

    • Author(s)
      日比生直樹、長田喜郎、西賢二、程久美子
    • Organizer
      第34回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜
    • Year and Date
      2011-12-16
    • Related Report
      2012 Final Research Report
  • [Presentation] 2本鎖RNA特異的アデノシンデアミネースと相互作用するmiRNAの同定2011

    • Author(s)
      石井倫太郎、西賢二、程久美子
    • Organizer
      第34回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜
    • Year and Date
      2011-12-16
    • Related Report
      2012 Final Research Report
  • [Presentation] RNAサイレンシング関連分子のヒトshRNAライブラリを用いたスクリーニング2011

    • Author(s)
      長沢達矢、程久美子
    • Organizer
      第34回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜
    • Year and Date
      2011-12-16
    • Related Report
      2012 Final Research Report
  • [Presentation] 外来性miRNAのトランスフェクションによる内在性miRNAサイレンシング効果抑制のマイクロアレイ解析2011

    • Author(s)
      清水英悟、日比生直樹、長田喜郎、程久美子
    • Organizer
      第34回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜
    • Year and Date
      2011-12-16
    • Related Report
      2012 Final Research Report
  • [Presentation] 高感度アレイを利用した小分子RNAの作用機序の解明2011

    • Author(s)
      程久美子
    • Organizer
      2011アジレントゲノミクスフォーラム
    • Place of Presentation
      KFCビル(東京)
    • Year and Date
      2011-06-14
    • Related Report
      2012 Final Research Report
  • [Presentation] Identification of small interfering RNA binding domains of the TAR RNA binding protein (TRBP) and their molecular implication in RNA interference2011

    • Author(s)
      Tomoko Takahashi
    • Organizer
      Sixteenth Annual Meeting of the RNA Society
    • Place of Presentation
      Kyoto International Conference Center(京都)
    • Related Report
      2011 Annual Research Report
  • [Presentation] ヒトGW182タンパク質の核-細胞質間輸送機構の解析2010

    • Author(s)
      西賢二、田中愛、程久美子
    • Organizer
      BMB2010
    • Place of Presentation
      神戸ポートアイランド
    • Year and Date
      2010-12-09
    • Related Report
      2012 Final Research Report 2010 Annual Research Report
  • [Presentation] miRNAサイレンシング活性を決める要因の検討2010

    • Author(s)
      高橋朋子、西賢二、善野修平、程久美子
    • Organizer
      BMB2010
    • Place of Presentation
      神戸ポートアイランド
    • Year and Date
      2010-12-09
    • Related Report
      2012 Final Research Report 2010 Annual Research Report
  • [Presentation] siRNA非シード部位と二本鎖RNA結合タンパク質TRBPの相互作用2010

    • Author(s)
      日比生直樹、長田喜郎、内藤雄樹、西賢二、程久美子
    • Organizer
      BMB2010
    • Place of Presentation
      神戸ポートアイランド
    • Year and Date
      2010-12-09
    • Related Report
      2012 Final Research Report 2010 Annual Research Report
  • [Presentation] 小分子RNA作用マシナリーの調節機構-内在性miRNAサイレンシングの外来性miRNAによる抑制とその定量化2010

    • Author(s)
      程久美子
    • Organizer
      新学術領域非コードRNA作用マシナリー第2回領域会議
    • Place of Presentation
      岡崎コンファレンスセンター
    • Year and Date
      2010-10-06
    • Related Report
      2010 Annual Research Report
  • [Presentation] 2本鎖RNA結合タンパク質TRBPとsiRNA相互作用の解析2010

    • Author(s)
      高橋朋子
    • Organizer
      新学術領域非コードRNA作用マシナリー第2回領域会議
    • Place of Presentation
      岡崎コンファレンスセンター
    • Year and Date
      2010-10-06
    • Related Report
      2010 Annual Research Report
  • [Presentation] 高いゲノム多様性をもつHIV-1を標的とする至適siRNAの設計2010

    • Author(s)
      内藤雄樹、程久美子
    • Organizer
      第20回日本数理生物学会年会
    • Place of Presentation
      北海道大学学術交流会館
    • Year and Date
      2010-09-16
    • Related Report
      2012 Final Research Report 2010 Annual Research Report
  • [Presentation] ヒトGW182タンパク質における核外移行シグナル及び核移行シグナルの同定2010

    • Author(s)
      西賢二
    • Organizer
      第10回東京大学生命科学シンポジウム
    • Place of Presentation
      東京大学
    • Year and Date
      2010-05-01
    • Related Report
      2010 Annual Research Report
  • [Presentation] siRNAのseed配列によるオフターゲット効果を最少とし、標的mRNA特異的抑制効果を示すsiRNA設計ウェブサーバの構築2010

    • Author(s)
      内藤雄樹
    • Organizer
      第10回東京大学生命科学シンポジウム
    • Place of Presentation
      東京大学
    • Year and Date
      2010-05-01
    • Related Report
      2010 Annual Research Report
  • [Presentation] Modified siRNA is a powerful tool for mammalian gene silencing with significantly reduced off-target effect2010

    • Author(s)
      Kumiko Ui-Tei
    • Organizer
      The 3rd Pan Pacific Symposium on Stem Cells Research 2010 (PPSSC 2010)
    • Place of Presentation
      Taichung(Taiwan)
    • Year and Date
      2010-04-17
    • Related Report
      2012 Final Research Report
  • [Presentation] Modified siRNA is a powerful tool for mammalian gene silencing with significantly reduced off-target effect2010

    • Author(s)
      Ui-Tei, K.
    • Organizer
      The 3rd Pan Pacific Symposium on Stem Cells Research 2010
    • Place of Presentation
      Evergreen Laurel Hotel(台中),台湾(招待講演)
    • Year and Date
      2010-04-17
    • Related Report
      2010 Annual Research Report
  • [Presentation] siRNAの塩基配列に依存したサイレンシング活性2010

    • Author(s)
      程久美子
    • Organizer
      バイオを論じる会第159回セミナー
    • Place of Presentation
      防衛医科大学校
    • Year and Date
      2010-02-22
    • Related Report
      2009 Annual Research Report
  • [Presentation] Identification of Nuclear Export Signal and Nuclear Localization Signal inHuman GW182 Family Proteins2010

    • Author(s)
      Kenji Nishi , Ai Tanaka, Kumiko Ui-Tei
    • Organizer
      The 19th CDB Meeting "RNA Sciences in Cell and Developmental Biology
    • Place of Presentation
      RIKEN CDB
    • Related Report
      2012 Final Research Report
  • [Presentation] siDirect 2.0: an Updated Website to Select Functional,Target-specific siRNA with Reduced Seed-dependent Off-target Effect for Mammalian Functional Genomics2010

    • Author(s)
      Yuki Naito , Jun Yoshimura, Shinichi Morishita, Kumiko Ui-Tei
    • Organizer
      The 19th CDB Meeting "RNA Sciences in Cell and Developmental Biology
    • Place of Presentation
      RIKEN CDB
    • Related Report
      2012 Final Research Report
  • [Presentation] Identification of Nuclear Export Signal and Nuclear Localization Signal in Human GW182 Family Proteins2010

    • Author(s)
      Nishi, K.
    • Organizer
      The 19th CDB Meeting "RNA Sciences in Cell and Developmental Biology
    • Place of Presentation
      RIKEN Center for Developmental Biology(神戸)
    • Related Report
      2010 Annual Research Report
  • [Presentation] siDirect 2.0 : an Updated Website to Select Functional, Target-specific siRNA with Reduced Seed-dependent Off-target Effect for Mammalian Functional Genomics2010

    • Author(s)
      Yuki, N.
    • Organizer
      The 19th CDB Meeting "RNA Sciences in Cell and Developmental Biology
    • Place of Presentation
      RIKEN Center for Developmental Biology(神戸)
    • Related Report
      2010 Annual Research Report
  • [Presentation] RNAサイレンシング活性を制御する小分子RNAの塩基配列2009

    • Author(s)
      程久美子
    • Organizer
      第32回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜
    • Year and Date
      2009-12-09
    • Related Report
      2012 Final Research Report
  • [Presentation] siDrect2.0:a website updated to select functional siRNA with reduced off-target effect for functional genomics2009

    • Author(s)
      内藤雄樹 、吉村淳、森下真一、 程久美子
    • Organizer
      第32回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜
    • Year and Date
      2009-12-09
    • Related Report
      2012 Final Research Report
  • [Presentation] Motif analyses of subcellular location of human GW182 family proteins2009

    • Author(s)
      西賢二 、田中愛、程久美子
    • Organizer
      第32回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜
    • Year and Date
      2009-12-09
    • Related Report
      2012 Final Research Report
  • [Presentation] 転写因子ZEB1の制御を介したE-カドヘリンの発現誘導に関わる小分子RNA2009

    • Author(s)
      松田みなみ、西賢二、程久美子
    • Organizer
      第32回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜
    • Year and Date
      2009-12-09
    • Related Report
      2012 Final Research Report
  • [Presentation] siRNA非シード部位とRNA結合タンパク質の相互作用2009

    • Author(s)
      高橋朋子、西賢二、善野修平、程久美子
    • Organizer
      第32回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜
    • Year and Date
      2009-12-09
    • Related Report
      2012 Final Research Report
  • [Presentation] Functional shRNA expression system with reduced off-target effects2009

    • Author(s)
      Naito Y , Nishi K, Juni A, Ui-Tei K
    • Organizer
      2009 InternationalSymposium on Micro-NanoMechatronics and Human Science(MHS2009)
    • Place of Presentation
      Toyoda Auditorium, Nagoya University.
    • Year and Date
      2009-11-10
    • Related Report
      2012 Final Research Report
  • [Presentation] Reduced base-base interactions between the DNA seed and RNA target are the major DNA-seed-containing siRNA2009

    • Author(s)
      Ui-Tei, K.
    • Organizer
      MHS2009
    • Place of Presentation
      名古屋
    • Year and Date
      2009-11-10
    • Related Report
      2009 Annual Research Report
  • [Presentation] Reduced base-base interactions between the DNA seed and RNAtarget are the major determinants of a significant reduction in the off-target effect due to DNA-seed-containing siRNA2009

    • Author(s)
      Ui-Tei K, Nishi K, Naito Y, Zenno S, Juni A, Saigo, K
    • Organizer
      2009 International Symposium on Micro-NanoMechatronics and Human Science(MHS2009)
    • Place of Presentation
      Toyoda Auditorium, Nagoya University.
    • Year and Date
      2009-11-09
    • Related Report
      2012 Final Research Report
  • [Presentation] Functional shRNA expression system with reduced off-target effects2009

    • Author(s)
      Naito, Y.
    • Organizer
      MHS2009
    • Place of Presentation
      名古屋
    • Year and Date
      2009-11-09
    • Related Report
      2009 Annual Research Report
  • [Presentation] 小分子RNAによる標的mRNA認識機構2009

    • Author(s)
      程久美子
    • Organizer
      私立大学戦略的研究基盤形成支援事業シンポジウム「診断・治療に新たな展開をもたらす機能性RNA研究
    • Place of Presentation
      日本医科大学・橘桜会館
    • Year and Date
      2009-11-07
    • Related Report
      2009 Annual Research Report
  • [Presentation] 1遺伝子特異的発現抑制システムの構築2009

    • Author(s)
      程久美子
    • Organizer
      マルチスケール操作によるシステム細胞工学(バイオ操作)公開シンポジウム=分野横断的手法を活用した新時代の生命科学研究=
    • Place of Presentation
      東京大学
    • Year and Date
      2009-08-18
    • Related Report
      2009 Annual Research Report
  • [Presentation] Small RNAシード領域の熱力学的安定性に依存したサイレンシング効果2009

    • Author(s)
      長田喜郎、西賢二、内藤雄樹、程久美子
    • Organizer
      第32回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜
    • Year and Date
      2009-01-29
    • Related Report
      2012 Final Research Report
  • [Presentation] RNAサイレンシング活性を制御する小分子RNAの塩基配列2009

    • Author(s)
      程久美子
    • Organizer
      第32回日本分子生物学会年会
    • Place of Presentation
      横浜
    • Related Report
      2009 Annual Research Report
  • [Presentation] siDrect2.0 : a website updated to select functional siRNA with reduced off-targeteffect for functional genomics2009

    • Author(s)
      内藤雄樹
    • Organizer
      第32回日本分子生物学会年会
    • Place of Presentation
      横浜
    • Related Report
      2009 Annual Research Report
  • [Presentation] Motif analyses of subcellular location of human GW182 family proteins2009

    • Author(s)
      西賢二
    • Organizer
      第32回日本分子生物学会年会
    • Place of Presentation
      横浜
    • Related Report
      2009 Annual Research Report
  • [Presentation] 転写因子ZEB1の制御を介したE-カドヘリンの発現誘導に関わる小分子RNA2009

    • Author(s)
      松田みなみ
    • Organizer
      第32回日本分子生物学会年会
    • Place of Presentation
      横浜
    • Related Report
      2009 Annual Research Report
  • [Presentation] イントロン性microRNAの宿主遺伝子に対する発現制御機構の解析2009

    • Author(s)
      米沢諭史
    • Organizer
      第32回日本分子生物学会年会
    • Place of Presentation
      横浜
    • Related Report
      2009 Annual Research Report
  • [Presentation] siRNA非シード部位とRNA結合タンパク質の相互作用2009

    • Author(s)
      高橋朋子
    • Organizer
      第32回日本分子生物学会年会
    • Place of Presentation
      横浜
    • Related Report
      2009 Annual Research Report
  • [Presentation] Small RNAシード領域の熱力学的安定性に依存したサイレンシング効果2009

    • Author(s)
      長田喜郎
    • Organizer
      第32回日本分子生物学会年会
    • Place of Presentation
      横浜
    • Related Report
      2009 Annual Research Report
  • [Presentation] 核内RNAサイレンシングはヒトTNRC6A/GW182によるArgonauteの核内移行により引き起こされる

    • Author(s)
      西 賢二
    • Organizer
      第34回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜(神奈川)
    • Related Report
      2011 Annual Research Report
  • [Presentation] Comparative analysis of siRNA binding patterns of dsRNA binding proteins, TRBP and PACT

    • Author(s)
      Tomoko Takahashi
    • Organizer
      第34回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜(神奈川)
    • Related Report
      2011 Annual Research Report
  • [Presentation] miRNAによるサイレンシング効率を決定する要因の同定

    • Author(s)
      日比生 直樹
    • Organizer
      第34回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜(神奈川)
    • Related Report
      2011 Annual Research Report
  • [Presentation] 2本鎖RNA特異的アデノシンデアミネースと相互作用するmiRNAの同定

    • Author(s)
      石井 倫太郎
    • Organizer
      第34回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜(神奈川)
    • Related Report
      2011 Annual Research Report
  • [Presentation] RNAサイレンシング関連分子のヒトshRNAライブラリを用いたスクリーニング

    • Author(s)
      長沢 達矢
    • Organizer
      第34回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜(神奈川)
    • Related Report
      2011 Annual Research Report
  • [Presentation] 外来性miRNAのトランスフェクションによる内在性miRNAサイレンシング効果抑制のマイクロアレイ解析

    • Author(s)
      清水 英悟
    • Organizer
      第34回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜(神奈川)
    • Related Report
      2011 Annual Research Report
  • [Presentation] 高感度アレイを利用した小分子 RNA の作用機序の解明

    • Author(s)
      程 久美子
    • Organizer
      2011アジレント ゲノミクスフォーラム
    • Place of Presentation
      KFCビル(東京)
    • Related Report
      2011 Annual Research Report
  • [Presentation] microRNAサイレンシング活性の定量的解析

    • Author(s)
      日比生 直樹
    • Organizer
      第11回 東京大学生命科学シンポジウム
    • Place of Presentation
      東京大学・工学部2号館(東京)
    • Related Report
      2011 Annual Research Report
  • [Book] BIOINDUSTRY核酸医薬の開発動向2012

    • Author(s)
      程久美子
    • Publisher
      シーエムシー出版
    • Related Report
      2012 Final Research Report
  • [Book] 実験医学別冊目的別で選べる遺伝子導入プロトコール2012

    • Author(s)
      程久美子、北條浩彦,他
    • Publisher
      羊土社
    • Related Report
      2012 Final Research Report
  • [Book] 実験医学別冊目的別で選べる遺伝子導入プロトコール2012

    • Author(s)
      程久美子
    • Publisher
      羊土社
    • Related Report
      2012 Final Research Report
  • [Book] 実験医学別冊目的別で選べる遺伝子導入プロトコール2012

    • Author(s)
      西賢二、高橋朋子、長沢達矢、程久美子
    • Publisher
      羊土社
    • Related Report
      2012 Final Research Report
  • [Book] BIO INDUSTRY 核酸医薬の開発動向2012

    • Author(s)
      程 久美子
    • Total Pages
      4
    • Publisher
      シーエムシー出版
    • Related Report
      2012 Annual Research Report
  • [Book] 実験医学別冊 目的別で選べる 遺伝子導入プロトコール2012

    • Author(s)
      程 久美子
    • Total Pages
      5
    • Publisher
      羊土社
    • Related Report
      2012 Annual Research Report
  • [Book] 実験医学別冊 目的別で選べる 遺伝子導入プロトコール2012

    • Author(s)
      西 賢二
    • Total Pages
      5
    • Publisher
      羊土社
    • Related Report
      2012 Annual Research Report
  • [Book] Gene Silencing: Theory Techniques and Applications2010

    • Author(s)
      Narikawa K , Nishi K, Naito Y, Mazda M, Ui-Tei K
    • Publisher
      Nova Science Publishers
    • Related Report
      2012 Final Research Report
  • [Book] RNA工学の基礎と応用(普及版)2010

    • Author(s)
      内藤雄樹、山田智之、程久美子、森下真一、西郷薫
    • Publisher
      シーエムシー出版
    • Related Report
      2012 Final Research Report
  • [Book] 改訂第5版新遺伝子工学ハンドブック2010

    • Author(s)
      内藤雄樹、程久美子
    • Publisher
      羊土社
    • Related Report
      2012 Final Research Report
  • [Book] 改訂第5版新遺伝子工学ハンドブック2010

    • Author(s)
      西賢二、程久美子
    • Publisher
      羊土社
    • Related Report
      2012 Final Research Report
  • [Book] Gene Silencing : Theory Techniques and Applications2010

    • Author(s)
      Narikawa, K.
    • Publisher
      Genome-wide identification and analysis of miRNAs complementary to upstream of mRNA transcription start sites
    • Related Report
      2010 Annual Research Report
  • [Book] RNA工学の基礎と応用(普及版)2010

    • Author(s)
      内藤雄樹
    • Publisher
      効率的なsiRNAの設計
    • Related Report
      2010 Annual Research Report
  • [Book] 改訂第5版新遺伝子工学ハンドブック2010

    • Author(s)
      内藤雄樹
    • Publisher
      培養細胞での遺伝子ノックダウン法哺乳類細胞での標的遺伝子を特異的にノックダウンできるsiRNAの選択法
    • Related Report
      2010 Annual Research Report
  • [Book] 改訂第5版新遺伝子工学ハンドブック2010

    • Author(s)
      西賢二
    • Publisher
      培養細胞での遺伝子ノックダウン法siRNAおよびmiRNAによる遺伝子ノックダウン
    • Related Report
      2010 Annual Research Report
  • [Book] 東大式 現代用語ナビ2009

    • Author(s)
      程 久美子
    • Publisher
      化学同人
    • Related Report
      2012 Final Research Report
  • [Remarks]

    • URL

      http://ui-tei.rnai.jp/

    • Related Report
      2012 Final Research Report
  • [Remarks] 東京大学 程研究室ホームページ

    • URL

      http://ui-tei.rnai.jp/publications.html

    • Related Report
      2012 Annual Research Report
  • [Remarks] 東京大学 程研究室ホームページ

    • URL

      http://ui-tei.rnai.jp/publications.html

    • Related Report
      2011 Annual Research Report
  • [Remarks]

    • URL

      http://ui-tei.rnai.jp/

    • Related Report
      2010 Annual Research Report
  • [Remarks]

    • URL

      http://ui-tei.rnai.jp

    • Related Report
      2009 Annual Research Report

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Published: 2009-04-01   Modified: 2019-07-29  

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