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Regulation of gene expression during environmental adaptation in hyperthermophiles

Research Project

Project/Area Number 21310124
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field 基礎ゲノム科学
Research InstitutionTokyo Institute of Technology

Principal Investigator

FUKUI Toshiaki  東京工業大学, 大学院・生命理工学研究科, 准教授 (80271542)

Co-Investigator(Kenkyū-buntansha) KANAI Tamotsu  京都大学, 大学院・工学研究科, 講師 (10346083)
Project Period (FY) 2009 – 2011
Project Status Completed (Fiscal Year 2011)
Budget Amount *help
¥17,030,000 (Direct Cost: ¥13,100,000、Indirect Cost: ¥3,930,000)
Fiscal Year 2011: ¥3,770,000 (Direct Cost: ¥2,900,000、Indirect Cost: ¥870,000)
Fiscal Year 2010: ¥6,630,000 (Direct Cost: ¥5,100,000、Indirect Cost: ¥1,530,000)
Fiscal Year 2009: ¥6,630,000 (Direct Cost: ¥5,100,000、Indirect Cost: ¥1,530,000)
Keywordsゲノム発現 / 超好熱菌 / 始原菌 / アーキア / 遺伝子破壊 / 環境適応 / 発現制御 / シグナル伝達
Research Abstract

Hyperthermophilic archaea are capable of adapting to changes in environmental conditions in spite of their small set of genes. This study focused on regulation of gene expression during environmental adaptation in the hyperthermophilic archaeon Thermococcus kodakarensis. We identified the NikR-dependent regulon probably functional in Ni^<2+>-transport, and Phr-dependent regulon for heat-shock responses. We also found that a pair of PIN domain protein and hypothetical protein, involved in repression of chitin-degradation genes, acted as a global factor for expression regulation of various gene in the overall genome, and the proteins interacted to each other to form a complex. Moreover, disruption of probable protein kinase gene(s) in the hyperthermophile resulted in changes of intracellular amount of many proteins, suggesting the presence of regulation systems through protein phosphorylation.

Report

(4 results)
  • 2011 Annual Research Report   Final Research Report ( PDF )
  • 2010 Annual Research Report
  • 2009 Annual Research Report
  • Research Products

    (17 results)

All 2011 2010 2009

All Journal Article (5 results) (of which Peer Reviewed: 5 results) Presentation (12 results)

  • [Journal Article] Distinct physiological roles of the three[ NiFe]-hydrogenase orthologs in the hyperthermophilic archaeon Thermococcus kodakarensis2011

    • Author(s)
      Kanai T, Matsuoka R, Beppu H, NakajimaA, Okada Y, Atomi H, Imanaka T
    • Journal Title

      J. Bacteriol

      Volume: 193 Pages: 3109-16

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Identification of the Phr-dependent heat shock regulon in the hyperthermophilic archaeon2010

    • Author(s)
      Kanai T, Takedomi S, Fujiwara S, Atomi H, Imanaka T
    • Journal Title

      Thermococcus kodakaraensis J. Biochem

      Volume: 147 Pages: 361-370

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Characterization of NADH oxidase/NADPH polysulfide oxidoreductase and its unexpected participation in oxygen sensitivity in an anaerobic hyperthermophilic archaeon2010

    • Author(s)
      Kobori H, Ogino M, , Orita I, Nakamura S, Imanaka T, Fukui T
    • Journal Title

      J. Bacteriol

      Volume: 192 Pages: 5192-5202

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Characterization of NADH Oxidase/NADPH Polysulfide Oxidoreductase and Its Unexpected Participation in Oxygen Sensitivity in an Anaerobic Hyperthermophilic Archaeon2010

    • Author(s)
      H.Kobori, M.Ogino, I.Orita, S.Nakamura, T.Imanaka, T.Fukui
    • Journal Title

      Journal of Bacteriology

      Volume: 192 Pages: 5192-5202

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Identification of the Phr-dependent heat shock regulon in the hyperthermophilic archaeon, Thermococcus kodakaraensis2010

    • Author(s)
      Kanai T, Takedomi S, Fujiwara S, Atomi H, Imanaka T
    • Journal Title

      Journal of Biochemistry

      Volume: 147 Pages: 361-370

    • NAID

      10027874436

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Presentation] Elucidation of the functions of the Ars Rtranscription regulators in Thermococcus kodakarensis2011

    • Author(s)
      Lee S, Kanai T, Atomi H
    • Organizer
      極限環境生物学会第12回年会
    • Place of Presentation
      長崎
    • Year and Date
      2011-11-28
    • Related Report
      2011 Final Research Report
  • [Presentation] Elucidation of the functions of the ArsR transcription regulators in Thermococcus kodakarensis2011

    • Author(s)
      Seohyun Lee, Tamotsu Kanai, Haruyuki Atomi
    • Organizer
      極限環境生物学会第12回年会
    • Place of Presentation
      長崎大学
    • Year and Date
      2011-11-28
    • Related Report
      2011 Annual Research Report
  • [Presentation] 超好熱菌Thermococcus kodakarensisキチン代謝遺伝子クラスターにおける発現制御機構の解析2011

    • Author(s)
      坂本香織、瀬畑真、折田和泉、中村聡、今中忠行、福居俊昭
    • Organizer
      第63回日本生物工学会大会
    • Place of Presentation
      東京農工大学
    • Year and Date
      2011-09-28
    • Related Report
      2011 Annual Research Report
  • [Presentation] 超好熱菌Thermococcus kodakarensisキチン代謝遺伝子クラスターにおける発現制御機構の解析2011

    • Author(s)
      坂本香織、瀬畑真、折田和泉、中村聡、今中忠行、福居俊昭
    • Organizer
      第63回日本生物工学会大会
    • Place of Presentation
      東京
    • Year and Date
      2011-09-27
    • Related Report
      2011 Final Research Report
  • [Presentation] Distinct physiological roles of the three[ NiFe]-hydrogenase or thologs in the hyperthermophilic archaeon Thermococcus kodakarensis2011

    • Author(s)
      Kanai T, Matsuoka R, Beppu H, Nakajima A, Okada Y, Atomi H, Imanaka T
    • Organizer
      Thermophiles 2011, Big Sky
    • Place of Presentation
      Montana
    • Year and Date
      2011-09-13
    • Related Report
      2011 Final Research Report
  • [Presentation] 超好熱菌キチン代謝遺伝子クラスターの発現制御機構の解析2011

    • Author(s)
      坂本香織、瀬畑真、折田和泉、中村聡、今中忠行、福居俊昭
    • Organizer
      日本農芸化学会2011年度大会
    • Place of Presentation
      京都
    • Year and Date
      2011-03-05
    • Related Report
      2011 Final Research Report
  • [Presentation] 超好熱菌キチン代謝遺伝子クラスターの発現制御機構の解析2011

    • Author(s)
      坂本香織、瀬畑真、折田和泉、中村聡、今中忠行、福居俊昭
    • Organizer
      日本農芸化学会2011年度大会
    • Place of Presentation
      京都女子大学
    • Year and Date
      2011-03-05
    • Related Report
      2010 Annual Research Report
  • [Presentation] Regulation mechanism of archaeal heatshock regulator Extremophiles 20102010

    • Author(s)
      Kanai T, Kamashita T, Atomi H, Imanaka T
    • Organizer
      Sao Miguel
    • Place of Presentation
      Azores, Portugal
    • Year and Date
      2010-09-14
    • Related Report
      2011 Final Research Report
  • [Presentation] 超好熱始原菌Thermococcus kodakarensis由来NAD(P) Hオキシダーゼホモログの解析2010

    • Author(s)
      小堀宏樹、折田和泉、中村聡、今中忠行、福居俊昭
    • Organizer
      日本Archaea研究会第23回講演会
    • Place of Presentation
      名古屋
    • Year and Date
      2010-07-09
    • Related Report
      2011 Final Research Report
  • [Presentation] 超好熱始原菌Thermococcus kodakarensis由来NAD(P)Hオキシダーゼホモログの解析2010

    • Author(s)
      小堀宏樹、折田和泉、中村聡、今中忠行、福居俊昭
    • Organizer
      日本Archaea研究会第23回講演会
    • Place of Presentation
      名古屋大学
    • Year and Date
      2010-07-09
    • Related Report
      2010 Annual Research Report
  • [Presentation] 超好熱始原菌Thermococcus kodakaraensisにおけるタンパク質リン酸化ネットワークの解析2009

    • Author(s)
      姫野敦士、折田和泉、中村聡、今中忠行、福居俊昭
    • Organizer
      日本Archaea研究会第22回講演会
    • Place of Presentation
      札幌
    • Year and Date
      2009-07-11
    • Related Report
      2011 Final Research Report
  • [Presentation] 超好熱始原菌Thermococcus kodakaraensisにおけるタンパク質リン酸化ネットワークの解析2009

    • Author(s)
      姫野敦士、折田和泉、中村聡、今中忠行、福居俊昭
    • Organizer
      日本Archaea研究会第22回講演会
    • Place of Presentation
      業総合技術研究所北海道センター(札幌)
    • Year and Date
      2009-07-10
    • Related Report
      2009 Annual Research Report

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Published: 2009-04-01   Modified: 2016-04-21  

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