• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to previous page

Development of oligonucleotide-based artificial transcription factor based on the higher-order structure of nucleic acids

Research Project

Project/Area Number 21350094
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Chemistry related to living body
Research InstitutionOsaka University

Principal Investigator

OBIKA Satoshi  大阪大学, 大学院・薬学研究科, 教授 (80243252)

Co-Investigator(Kenkyū-buntansha) KODAMA Tetsuya  大阪大学, 大学院・薬学研究科, 助教 (00432443)
Project Period (FY) 2009 – 2011
Project Status Completed (Fiscal Year 2011)
Budget Amount *help
¥19,500,000 (Direct Cost: ¥15,000,000、Indirect Cost: ¥4,500,000)
Fiscal Year 2011: ¥3,250,000 (Direct Cost: ¥2,500,000、Indirect Cost: ¥750,000)
Fiscal Year 2010: ¥5,070,000 (Direct Cost: ¥3,900,000、Indirect Cost: ¥1,170,000)
Fiscal Year 2009: ¥11,180,000 (Direct Cost: ¥8,600,000、Indirect Cost: ¥2,580,000)
Keywords核酸 / 人工核酸 / 三重鎖 / 4重鎖 / 分子認識 / 転写制御 / 遺伝子 / 発現制御 / 有機化学
Research Abstract

An artificial nucleic acid bearing a switching function controlling structural properties, a useful nucleic acid unit for conjugation chemistry, and a couple of bridged nucleic acid guanine analogs were synthesized. Non-natural oligonucleotides that can form cytosine quadruplex structure at physiological conditions were synthesized as well. Moreover, invasive technique for evaluating gene expression change was established, and it was shown that artificial oligonucleotide could induce a change in gene expression pattern. These results indicate that our developing artificial nucleic acids are effective to gene expression regulation.

Report

(4 results)
  • 2011 Annual Research Report   Final Research Report ( PDF )
  • 2010 Annual Research Report
  • 2009 Annual Research Report
  • Research Products

    (21 results)

All 2012 2011 2010 2009

All Journal Article (9 results) (of which Peer Reviewed: 8 results) Presentation (11 results) Book (1 results)

  • [Journal Article] Synthesis and evaluation of novel caged DNA alkylating agents bearing 3, 4-epoxypiperidine structure2012

    • Author(s)
      Yuji Kawada, Tetsuya Kodama, Kazuyuki Miyashita, Takeshi Imanishi, Satoshi Obika
    • Journal Title

      Organic & Biomolecular Chemistry

      Volume: (in press) Issue: 26 Pages: 5102-5102

    • DOI

      10.1039/c2ob25366f

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Hybridizing ability and nuclease resistance profile of backbone modified cationic phosphorothioate oligonucleotides2012

    • Author(s)
      S. M. Abdur Rahman, Takeshi Baba, Tetsuya Kodama, Md. Ariful Islam, Satoshi Obika
    • Journal Title

      Bioorganic & Medicinal Chemistry

      Volume: (in press) Issue: 13 Pages: 4098-4102

    • DOI

      10.1016/j.bmc.2012.05.009

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Cleavage of oligonucleotides containing a P3'→N5' phosphoramidite linkage mediated by single-stranded oligonucleotide templates2011

    • Author(s)
      Kosuke R. Ito, Tetsuya Kodama, Futaba Makimura, Noritsugu Hosoki, Tomohisa Osaki, Ayao Orita, Takeshi Imanishi, Satoshi Obika
    • Journal Title

      Molecules

      Volume: 16 Pages: 10695-10708

    • Related Report
      2011 Annual Research Report 2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Design, synthesis and properties of boat-shaped glucopyranosyl nucleic acid2011

    • Author(s)
      Kazuto Mori, Tetsuya Kodama, Satoshi Obika
    • Journal Title

      Organic Letters

      Volume: 13 Pages: 6050-6053

    • Related Report
      2011 Annual Research Report 2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Benzylidene acetal-type bridged nucleic acids : changes in properties upon cleavage of the bridge triggered by external stimuli2011

    • Author(s)
      K. Morihiro, T. Kodama, S. Obika
    • Journal Title

      Chemistry-A European Journal

      Volume: 17 Pages: 7918-7926

    • Related Report
      2011 Annual Research Report 2011 Final Research Report
  • [Journal Article] Bridged nucleic acid conjugates at 6'-thiol : synthesis, hybridization properties and nuclease resistances2011

    • Author(s)
      Kazuto Mori, Tetsuya Kodama, Takeshi Baba, Satoshi Obika
    • Journal Title

      Organic & Biomolecular Chemistry

      Volume: 9 Pages: 5272-5279

    • Related Report
      2011 Annual Research Report 2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Synthesis and triplex-forming ability of oligonucleotides bearing 1-substituted 1H-1, 2, 3-triazole nucleobases2011

    • Author(s)
      Yoshiyuki Hari, Motoi Nakahara, Juanjuan Pang, Masaaki Akabane, Takeshi Kuboyama, Satoshi Obika
    • Journal Title

      Bioorbganic & Medicinal Chemistry

      Volume: 19 Pages: 1162-1166

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Synthesis and Triplex-Forming Ability of Oligonucleotides Bearing 1-Substituted 1H-1,2,3-Triazole Nucleobases2011

    • Author(s)
      Satoshi Obika, 他5名
    • Journal Title

      Bioorg.Med.Chem.

      Volume: 19 Pages: 1162-1166

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A novel bridged nucleoside bearing a conformationally switchable sugar moiety in response to redox changes2010

    • Author(s)
      Takeshi Baba, Tetsuya Kodama Kazuto Mori, Takeshi Imanishi, Satoshi Obika
    • Journal Title

      Chemical Communications

      Volume: 46 Pages: 8058-8060

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Presentation] 光刺激により糖部架橋構築が誘起される人工核酸の開発2012

    • Author(s)
      肯特夫, 森廣邦彦, 兒玉哲也, 小比賀聡
    • Organizer
      第132回日本薬学会年会
    • Place of Presentation
      北海道大学(札幌)
    • Year and Date
      2012-03-31
    • Related Report
      2011 Annual Research Report 2011 Final Research Report
  • [Presentation] 光刺激により認識塩基が変化するシン配向型非天然核酸塩基の開発2012

    • Author(s)
      森廣邦彦, 兒玉哲也, 小比賀聡
    • Organizer
      日本化学会第92春季年会
    • Place of Presentation
      慶応大学(横浜)
    • Year and Date
      2012-03-25
    • Related Report
      2011 Final Research Report
  • [Presentation] Synthesis and Evaluation of External Stimuli-responsive Bridged Nucleic Acids2011

    • Author(s)
      Kunihiko Morihiro, Tetsuya Kodama, Satoshi Obika
    • Organizer
      The 38th International Symposium on Nucleic Acid Chemistry(2011ISNAC)
    • Place of Presentation
      北海道大学(札幌)
    • Related Report
      2011 Final Research Report
  • [Presentation] Cleavage of Oligonucleotides Containing a P3'→N5' Phosphoramidate Linkage Triggered by Duplex Formation2011

    • Author(s)
      Kosuke. R. Ito, Tetsuya Kodama, Futaba Makimura, Noritsugu Hosoki, Tomohisa Osaki, Ayako Orita, Takeshi Imanishi, Satoshi Obika
    • Organizer
      The 38th International Symposium on Nucleic Acid Chemistry(2011ISNAC)
    • Place of Presentation
      北海道大学(札幌)
    • Related Report
      2011 Final Research Report
  • [Presentation] A new entry of thiol-containing nucleic acid monomer for conjugation chemistry2011

    • Author(s)
      Tetsuya Kodama, Kazuto Mori, Takeshi Baba, Satoshi Obika
    • Organizer
      6th Cambridge Symposium on Nucleic Acids Chemistry and Biology
    • Place of Presentation
      Queens' College Cambridge, UK
    • Related Report
      2011 Annual Research Report 2011 Final Research Report
  • [Presentation] Synthesis and Evaluation of External Stimuli-responsive Bridged Nucleic Acids2011

    • Author(s)
      K.Morihiro, T.Kodama, S.Obika
    • Organizer
      The 38th International Symposium on Nucleic Acid Chemistry (2011ISNAC)
    • Place of Presentation
      北海道大学(札幌)
    • Related Report
      2011 Annual Research Report
  • [Presentation] Cleavage of Oligonucleotides Containing a P3'→N5' Phosphoramidate Linkage Triggered by Duplex Formation2011

    • Author(s)
      K.R.Ito, T.Kodama, F.Makimura, N.Hosoki, T.Osaki, A.Orita, T.Imanishi, S.Obika.
    • Organizer
      The 38th International Symposium on Nucleic Acid Chemistry (2011ISNAC)
    • Place of Presentation
      北海道大学(札幌)
    • Related Report
      2011 Annual Research Report
  • [Presentation] 機能性人工核酸の開発-新たな核酸医薬・診断薬創出に向けて-2010

    • Author(s)
      小比賀聡
    • Organizer
      日本化学会第90春季年会
    • Place of Presentation
      大阪
    • Year and Date
      2010-03-27
    • Related Report
      2011 Final Research Report 2009 Annual Research Report
  • [Presentation] Synthesis and properties of 2', 4'-BNA with 8-aza-7-deazaguanine2010

    • Author(s)
      Yumi Takegaki, Kunihiko Morihiro, Tetsuya Kodama, Moeka Nakatani and Satoshi Obika
    • Organizer
      The International Chemical Congress of Pacific Basin Societies(PACIFICHEM 2010)
    • Place of Presentation
      Honolulu, Hawaii(USA)
    • Related Report
      2011 Final Research Report
  • [Presentation] Synthesis and properties of 2',4'-BNA with 8-aza-7-deazaguanine.2010

    • Author(s)
      Satoshi Obika, 他4名
    • Organizer
      The International Chemical Congress of Pacific Basin Societies (PACIFICHEM 2010)
    • Place of Presentation
      Honolulu, Hawaii (USA)
    • Related Report
      2010 Annual Research Report
  • [Presentation] 機能性アンチセンス分子による核酸医薬の開発2009

    • Author(s)
      小比賀聡
    • Organizer
      第3回創薬とイメージングに関するワークショップ
    • Place of Presentation
      大阪
    • Year and Date
      2009-12-04
    • Related Report
      2011 Final Research Report 2009 Annual Research Report
  • [Book] Therapeutic Oligonucleotides : Methods and Protocols2011

    • Author(s)
      Y.Hari, T.Kodama, T.Imanishi, S.Obika
    • Publisher
      Humana Press
    • Related Report
      2011 Annual Research Report

URL: 

Published: 2009-04-01   Modified: 2016-04-21  

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi