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Development of a pyrosequence-based technique for HIV drug-resistance diagnosis

Research Project

Project/Area Number 21360408
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Biofunction/Bioprocess
Research InstitutionWaseda University

Principal Investigator

TAKEYAMA Haruko  早稲田大学, 理工学術院, 教授 (60262234)

Co-Investigator(Kenkyū-buntansha) SUGIURA Wataru  (独)国立病院機構名古屋医療センター, 臨床研究センター感染免疫研究部, 部長 (70300936)
OKAMURA Yoshiko  広島大学, 先端物質科学研究科, 准教授 (80405513)
MORI Tetsushi  早稲田大学, 理工学術院, 助教 (00590100)
Project Period (FY) 2009 – 2011
Project Status Completed (Fiscal Year 2011)
Budget Amount *help
¥17,550,000 (Direct Cost: ¥13,500,000、Indirect Cost: ¥4,050,000)
Fiscal Year 2011: ¥5,980,000 (Direct Cost: ¥4,600,000、Indirect Cost: ¥1,380,000)
Fiscal Year 2010: ¥5,980,000 (Direct Cost: ¥4,600,000、Indirect Cost: ¥1,380,000)
Fiscal Year 2009: ¥5,590,000 (Direct Cost: ¥4,300,000、Indirect Cost: ¥1,290,000)
Keywordspyrosequencing / HIV / quasispecies / 同時並列個別増幅 / 一分子計測 / パイロシークエンス / ゲノム / 多様性解析 / シングルセル解析
Research Abstract

The aim of this research is to develop a single-cell analytical technique based on pyrosequencing to accurately identify diverse mutations within HIV and to conduct sequence-based elucidation of the mechanisms related to HIV quasispecies formation. As a result, we were successful in the establishment of a system for measuring cDNA molecules to as low as 10 copies. Furthermore, we were also successful in tracing the coevolution between the subtypes of HIV quasispecies-related proviral DNA, Gag and PR.

Report

(4 results)
  • 2011 Annual Research Report   Final Research Report ( PDF )
  • 2010 Annual Research Report
  • 2009 Annual Research Report
  • Research Products

    (28 results)

All 2011 2010 2009

All Journal Article (6 results) (of which Peer Reviewed: 6 results) Presentation (17 results) Book (5 results)

  • [Journal Article] Within-host Co-evolution of gag P453L and protease D30N/N88D demonstrates virological advantage in a highly protease inhibitor-exposed HIV-1 case2011

    • Author(s)
      Shibata J, Sugiura W, Ode H, Iwatani Y, Sato H, Tsang H, Matsuda M, Hasegawa N, Ren F, Tanaka H
    • Journal Title

      Antiviral Res

      Volume: 90 Pages: 33-41

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Within-host co-evolution of Gag P453L and protease D30N/N88D demonstrates virological advantage in a highly protease inhibitor-exposed HIV12011

    • Author(s)
      Shibata J, Sugiura W, Ode H, Iwatani Y, Sato H, Tsang H, Matsuda M, Hasegawa N, Ren F, Tanaka H
    • Journal Title

      Antiviral Res

      Volume: 90 Pages: 33-41

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Nano-sized bacterial magnetic particles displaying pyruvate phosphate dikinase for pyrosequencing2009

    • Author(s)
      Yoshino T, Nishimura T, Mori T, Suzuki S, Kambara H, Takeyama H, Matsunaga T
    • Journal Title

      Biotechnol. Bioeng

      Volume: 11 Pages: 130-137

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Nano-sized bacterial magnetic particles displaying pyruvate phosphate dikinase for pyrosequencing2009

    • Author(s)
      T.Yoshino, T.Nishimura, T.Mori, S.Suzuki, H.Kambara, H.Takeyama, T.Matsunaga
    • Journal Title

      Biotechnol.Bioeng 103

      Pages: 130-137

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A stable human progesterone receptor expressing HeLa reporter cell line as a tool in chemical evaluation at the different cell-cycle phases2009

    • Author(s)
      T.Mori, M.Murata, T.Yoshino, S.Nakasono, F.Saito, H.Takeyama, T.Matsunaga
    • Journal Title

      Toxicol.Lett. 186

      Pages: 123-129

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] High-Density Microcavity Array for Cell Detection : Single-Cell Analysis of Hematopoietic Stem Cells in Peripheral Blood Mononuclear Cells2009

    • Author(s)
      M.Hosokawa, A.Arakaki, M.Takahashi, T.Mori, H.Takeyama, T.Matsunaga
    • Journal Title

      Anal.Chem 81

      Pages: 5308-5313

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Presentation] Development of a capillary-plate-based digital counting system for single-cells and its application in HIV analysis2011

    • Author(s)
      Motoomi Suzuki, Tetsushi Mori, Haruko Takeyama, et al
    • Organizer
      German-Japanese Joint Symposium for Diamond Researchers on Sustainable Life Science Innovation
    • Place of Presentation
      ボン、ドイツ
    • Year and Date
      2011-12-05
    • Related Report
      2011 Annual Research Report
  • [Presentation] Application of environmental genome resources and the single cell based technology2011

    • Author(s)
      Haruko Takeyama
    • Organizer
      The 7th International Forum On Post-Genome Technologies
    • Place of Presentation
      重慶、中国(招待講演)
    • Year and Date
      2011-10-28
    • Related Report
      2011 Annual Research Report
  • [Presentation] Development of a capillary-plate-based digital counting system for single-cells and its application in HIV analysis2011

    • Author(s)
      Suzuki M, Mori T, Terahara K, Tsunetsugu-Yokota Y, Takeyama H
    • Organizer
      German-Japanese Joint Symposium for Diamond Researchers on Sustainable Life Science Innovation and Biomedical Research
    • Place of Presentation
      Bonn, Germany
    • Related Report
      2011 Final Research Report
  • [Presentation] Application of environmental genome resources and the single cell based technology2011

    • Author(s)
      Takeyama H
    • Organizer
      The 7th International Forum On Post-Genome Technologies
    • Place of Presentation
      Chongqing, China
    • Related Report
      2011 Final Research Report
  • [Presentation] 単一細胞内の分子定量に向けたキャピラリープレートPCR法の開発2011

    • Author(s)
      モリテツシ、鈴木基臣、岡村好子、竹山春子
    • Organizer
      第63回日本生物工学会大会
    • Place of Presentation
      東京農工大学、東京
    • Related Report
      2011 Annual Research Report 2011 Final Research Report
  • [Presentation] Development of Single Template PCR Technology with Capillary Plate toward single-cell analysis2010

    • Author(s)
      Okamura Y, Kambara H, Matsunaga T, Takeyama H.
    • Organizer
      PACIFICHEM 2010
    • Place of Presentation
      アメリカ、ハワイ
    • Year and Date
      2010-12-18
    • Related Report
      2010 Annual Research Report
  • [Presentation] 単一細胞内遺伝子発現デジタル解析に向けた1分子cDNAの検出2010

    • Author(s)
      岡村好子、神原秀紀、松永是、竹山春子
    • Organizer
      第50回化学センサ研究発表会
    • Place of Presentation
      神奈川工科大学
    • Year and Date
      2010-09-02
    • Related Report
      2010 Annual Research Report
  • [Presentation] 単一細胞解析に向けた同時並列個別増幅法の開発2010

    • Author(s)
      岡村好子, 神原秀紀, 松永是, 竹山春子
    • Organizer
      日本化学会第90春季年会
    • Place of Presentation
      大阪・近畿大学
    • Year and Date
      2010-03-27
    • Related Report
      2009 Annual Research Report
  • [Presentation] Development of Single Template PCR Technology with Capillary Plate toward single-cell analysis2010

    • Author(s)
      Okamura Y, Kambara H, Matsunaga T, Takeyama H
    • Organizer
      PACIFICHEM 2010
    • Place of Presentation
      Hawaii, USA
    • Related Report
      2011 Final Research Report
  • [Presentation] 単一細胞内遺伝子発現デジタル解析に向けた1分子cDNAの検出2010

    • Author(s)
      岡村好子、神原秀紀、松永是、竹山春子
    • Organizer
      第50回化学センサ研究発表会
    • Place of Presentation
      神奈川工科大学、神奈川県
    • Related Report
      2011 Final Research Report
  • [Presentation] Challenge for single cell analysis from microbes to mammalian cells2010

    • Author(s)
      Takeyama H
    • Organizer
      7th Joint Symposium between Waseda University and the University of Bonn
    • Place of Presentation
      Bonn, Germany
    • Related Report
      2011 Final Research Report
  • [Presentation] Development of single template amplification and product immobilization with single bead trap array2009

    • Author(s)
      岡村好子, 竹山春子, 白井正敬, 梶山智晴, 神原秀記, 松永是
    • Organizer
      Asia Pacific Biochemical Engineering Conference 2009
    • Place of Presentation
      Kobe, Japan
    • Year and Date
      2009-11-26
    • Related Report
      2009 Annual Research Report
  • [Presentation] パイロシークエンスに向けた1分子cDNA増幅集積技術の開発2009

    • Author(s)
      岡村好子・竹山春子・白井正敬・梶山智晴・神原秀記・松永是
    • Organizer
      第3回日本化学会関東支部大会
    • Place of Presentation
      東京・早稲田大学
    • Year and Date
      2009-09-03
    • Related Report
      2009 Annual Research Report
  • [Presentation] Within-host coevolution of Gag P453L and protease D30N/N88D demonstrates virological advantage in a highly protease inhibitor-exposed HIV-1 case2009

    • Author(s)
      柴田潤子、杉浦亙
    • Organizer
      10th Annual Symposium on Antiviral Drug Resistance
    • Place of Presentation
      Richmond, USA
    • Related Report
      2011 Final Research Report 2009 Annual Research Report
  • [Presentation] Within-host coevolution of Gag P453L and protease D30N/N88D demonstrates virological advantage in a highly protease inhibitor-exposed HIV-1 case2009

    • Author(s)
      柴田潤子、杉浦亙
    • Organizer
      第23回日本エイズ学会学術集会
    • Place of Presentation
      名古屋
    • Related Report
      2011 Final Research Report 2009 Annual Research Report
  • [Presentation] Development of single template amplification and product immobilization on a single bead2009

    • Author(s)
      Okamura Y, Shirai M, Kajiyama T, Kambara H, Matsunaga T, Takeyama H
    • Organizer
      The 6th International Forum On Post-Genome Technologies
    • Place of Presentation
      Beijing, China
    • Related Report
      2011 Final Research Report 2009 Annual Research Report
  • [Presentation] パイロシークエンスに向けた1分子cDNA増幅集積技術の開発2009

    • Author(s)
      岡村好子、竹山春子、白井正敬、梶山智晴、神原秀記、松永是
    • Organizer
      第3回日本化学会関東支部大会
    • Place of Presentation
      東京都
    • Related Report
      2011 Final Research Report
  • [Book] マイクロ流体デバイスのバイオ計測への応用「ナノ融合による先進バイオデバイス」2011

    • Author(s)
      竹山春子、モリテツシ、庄子習一
    • Publisher
      シーエムシー出版
    • Related Report
      2011 Final Research Report
  • [Book] マイクロ流体デバイスのバイオ計測への応用「ナノ融合による先進バイオデバイス」民谷栄一監修2011

    • Author(s)
      竹山春子、モリテツシ、庄子習一
    • Total Pages
      9
    • Publisher
      シーエムシー出版
    • Related Report
      2011 Annual Research Report
  • [Book] 一細胞からのmRNAをデジタル計測するための要素技術開発:「シングルセル解析の最前線」2010

    • Author(s)
      竹山春子, 岡村好子, 吉野知子, 神原秀記
    • Publisher
      シーエムシー出版
    • Related Report
      2011 Final Research Report
  • [Book] 一細胞からのmRNAをデジタル計測するための要素技術開発:「シングルセル解析の最前線」)(松永是・神原秀記・植田充美監修)2010

    • Author(s)
      竹山春子, 岡村好子, 吉野知子, 神原秀記
    • Total Pages
      7
    • Publisher
      シーエムシー出版
    • Related Report
      2010 Annual Research Report
  • [Book] シングルセル解析の最前線(第4章第1節を担当)2010

    • Author(s)
      竹山春子, 岡村好子, 吉野知子, 神原秀記
    • Total Pages
      286
    • Publisher
      シーエムシー
    • Related Report
      2009 Annual Research Report

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Published: 2009-04-01   Modified: 2016-04-21  

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