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Study on Rapid Optimizing Cell Inductive Differentiation Routes

Research Project

Project/Area Number 21360409
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Biofunction/Bioprocess
Research InstitutionNational Institute of Advanced Industrial Science and Technology

Principal Investigator

FUJIBUCHI Wataru  独立行政法人産業技術総合研究所, 生命情報工学研究センター, 研究チーム長 (60273512)

Co-Investigator(Kenkyū-buntansha) MIYAKE Masato  独立行政法人産業技術総合研究所, バイオメディカル研究部門, 連携研究隊長 (60344173)
GOSHIMA Naoki  独立行政法人産業技術総合研究所, バイオメディシナル情報研究センター, 主任研究員 (70215482)
Project Period (FY) 2009 – 2011
Project Status Completed (Fiscal Year 2011)
Budget Amount *help
¥16,510,000 (Direct Cost: ¥12,700,000、Indirect Cost: ¥3,810,000)
Fiscal Year 2011: ¥5,460,000 (Direct Cost: ¥4,200,000、Indirect Cost: ¥1,260,000)
Fiscal Year 2010: ¥5,330,000 (Direct Cost: ¥4,100,000、Indirect Cost: ¥1,230,000)
Fiscal Year 2009: ¥5,720,000 (Direct Cost: ¥4,400,000、Indirect Cost: ¥1,320,000)
Keywords発生分化 / データベース / バイオテクノロジー / 生体生命情報学 / 細胞分化 / バイオインフォマティクス / 組み合わせ探索 / siRNA / 転写因子
Research Abstract

Using a gene expression database of mesenchymal stem cells and various cells differentiated from them, we have invented two informatics methods to select candidates of cell differentiation induction factors. In one method we have shown that there are two out of top five candidates actually promote the adipocyte differentiation. In another method we have shown that we use only a few hundreds known data out of about 20, 000 human genes and predict cell differentiation factors with high accuracy. Furthermore, we have established an experimental method to use proteins as combinatorial induction system of multiple factors.

Report

(4 results)
  • 2011 Annual Research Report   Final Research Report ( PDF )
  • 2010 Annual Research Report
  • 2009 Annual Research Report
  • Research Products

    (17 results)

All 2012 2011 2010 2009 Other

All Journal Article (4 results) (of which Peer Reviewed: 2 results) Presentation (10 results) Book (1 results) Remarks (1 results) Patent(Industrial Property Rights) (1 results)

  • [Journal Article] Efficient protein transduction method using cationic peptides and lipids2011

    • Author(s)
      Kei Yamaguchi, Mari Inoue, Naoki Goshima
    • Journal Title

      J BIOMED BIOTECHNOL

      Volume: 2011 Issue: 1 Pages: 872065-872065

    • DOI

      10.1155/2011/872065

    • Related Report
      2011 Annual Research Report 2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] CELLPEDIA : a repository for human cell information for cell studies and differentiation analyses2011

    • Author(s)
      Hatano, A., Chiba, H., Moesa, H. A., Taniguchi, T., Nagaie, S., Yamanegi, K., Takai, T., Tanaka, H., Fujibuchi, W.
    • Journal Title

      Database 2011

      Volume: 2011 Issue: 0 Pages: bar046-bar046

    • DOI

      10.1093/database/bar046

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] 細胞情報解析に役立つツール-幹細胞研究の進展とその創薬応用に向けて2010

    • Author(s)
      千葉啓和、藤渕航
    • Journal Title

      実験医学

      Volume: 28 Pages: 3171-4

    • Related Report
      2011 Final Research Report 2010 Annual Research Report
  • [Journal Article]2009

    • Author(s)
      藤渕航
    • Journal Title

      Methods in Molecular Biology, Vol.577(Humana Press Inc., U.S.A.)

      Pages: 55-65

    • Related Report
      2009 Annual Research Report
  • [Presentation] Predicting novel inducers of cell differentiation from gene expression data2011

    • Author(s)
      千葉啓和、藤渕航
    • Organizer
      Cell Functional Analysis in silico Workshop
    • Place of Presentation
      群馬、群馬大学草津セミナーハウス
    • Year and Date
      2011-08-19
    • Related Report
      2011 Final Research Report
  • [Presentation] Predicting novel inducers of cell differentiation from gene expression data2011

    • Author(s)
      千葉啓和
    • Organizer
      Cell Functional Analysis in silico Workshop
    • Place of Presentation
      群馬県、群馬大学草津セミナーハウス
    • Year and Date
      2011-08-19
    • Related Report
      2011 Annual Research Report
  • [Presentation] 分化阻害因子の抑制によるヒト間葉系幹細胞の脂肪分化誘導2011

    • Author(s)
      田中卓、千葉啓和、藤渕航、三宅正人
    • Organizer
      日本再生医療学会総会
    • Place of Presentation
      新宿京王プラザホテル
    • Year and Date
      2011-03-01
    • Related Report
      2011 Final Research Report 2010 Annual Research Report
  • [Presentation] 細胞分化制御のためのデータマイニング技術の開発2011

    • Author(s)
      千葉啓和、田中卓、三宅正人、藤渕航
    • Organizer
      LS-BT合同研究発表会
    • Place of Presentation
      産業技術総合研究所つくばセンター
    • Year and Date
      2011-01-12
    • Related Report
      2011 Final Research Report
  • [Presentation] 細胞分化制御のためのデータマイニング技術の開発2011

    • Author(s)
      千葉啓和、田中卓、三宅正人、藤渕航
    • Organizer
      LS-BT合同研究発表会
    • Place of Presentation
      産業技術総合研究所 つくばセンター
    • Year and Date
      2011-01-12
    • Related Report
      2010 Annual Research Report
  • [Presentation] Prediction of novel efficient inducers for mesenchymal stem cell differentiation2010

    • Author(s)
      Hirokazu Chiba、Taku Tanaka、Masato Miyake、Wataru Fujibuchi
    • Organizer
      CBRC2010
    • Place of Presentation
      CBRC/AIST
    • Year and Date
      2010-07-29
    • Related Report
      2011 Final Research Report
  • [Presentation] Prediction of novel efficient inducers for mesenchymal stem cell differentiation2010

    • Author(s)
      Hirokazu Chiba, Taku Tanaka, Masato Miyake, Wataru Fujibuchi
    • Organizer
      CBRC2010
    • Place of Presentation
      CBRC, AIST
    • Year and Date
      2010-07-29
    • Related Report
      2010 Annual Research Report
  • [Presentation] Adipogenesis induced by short interference RNAs predicted by informatics2010

    • Author(s)
      Taku Tanaka、Hirokazu Chiba、Wataru Fujibuchi、Masato Miyake
    • Organizer
      Systems Biology : Global Regulation of Gene Expression
    • Place of Presentation
      Cold Spring Harbor Laboratory, New York
    • Year and Date
      2010-03-25
    • Related Report
      2011 Final Research Report 2009 Annual Research Report
  • [Presentation] A method for optimizing gene combination to induce adipocyte differentiation from mesenchymal stem cells2010

    • Author(s)
      Hirokazu Chiba、Taku Tanaka、Masato Miyake、Wataru Fujibuchi
    • Organizer
      Systems Biology : Global Regulation of Gene Expression
    • Place of Presentation
      Cold Spring Harbor Laboratory, New York
    • Year and Date
      2010-03-24
    • Related Report
      2011 Final Research Report 2009 Annual Research Report
  • [Presentation] 細胞分化解析を目指した網羅的ヒト細胞データベース2010

    • Author(s)
      幡野晶子、Harry Amri Moesa、千葉啓和、谷口丈晃、永家聖、山根木康嗣、藤渕航
    • Organizer
      情報処理学会・バイオ情報学研究会
    • Place of Presentation
      北陸先端大学
    • Year and Date
      2010-03-05
    • Related Report
      2011 Final Research Report 2009 Annual Research Report
  • [Book] U. S. A.、Methods in Molecular Biology2009

    • Author(s)
      藤渕航
    • Publisher
      Humana Press
    • Related Report
      2011 Final Research Report
  • [Remarks] 細胞分化データベース

    • URL

      http://cellpedia.cbrc.jp/

    • Related Report
      2011 Final Research Report
  • [Patent(Industrial Property Rights)] プロテインタグ、タグ化タンパク及びタンパク精製方法2012

    • Inventor(s)
      五島直樹、森正敏
    • Industrial Property Rights Holder
      産業技術総合研究所
    • Industrial Property Number
      2012-087214
    • Filing Date
      2012-04-06
    • Related Report
      2011 Annual Research Report 2011 Final Research Report

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Published: 2009-04-01   Modified: 2016-04-21  

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