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Analysis of intraspecific diversification caused by phytochrome gene evolution as photo-receptor

Research Project

Project/Area Number 21370036
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Biodiversity/Systematics
Research InstitutionKyoto University

Principal Investigator

SETOGUCHI Hiroaki  京都大学, 大学院・人間・環境学研究科, 准教授 (70206647)

Co-Investigator(Kenkyū-buntansha) NAGATANI Akira  京都大学, 大学院・理学研究科, 教授 (40183082)
FUJII Noriyuki  熊本大学, 大学院・自然科学研究科, 准教授 (40305412)
IKEDA Hajime  東京大学, 国立科学博物館, 研究員 (70580405)
Project Period (FY) 2009 – 2011
Project Status Completed (Fiscal Year 2011)
Budget Amount *help
¥18,720,000 (Direct Cost: ¥14,400,000、Indirect Cost: ¥4,320,000)
Fiscal Year 2011: ¥4,810,000 (Direct Cost: ¥3,700,000、Indirect Cost: ¥1,110,000)
Fiscal Year 2010: ¥5,330,000 (Direct Cost: ¥4,100,000、Indirect Cost: ¥1,230,000)
Fiscal Year 2009: ¥8,580,000 (Direct Cost: ¥6,600,000、Indirect Cost: ¥1,980,000)
Keywords進化 / 適応 / フィトクロム / 光環境 / アブラナ科 / マメ科 / 花成 / 環境適応 / 周極高山植物 / 系統地理 / ミヤマタネツケバナ / 環境応答 / Cardamine / phyE / 高山植物
Research Abstract

We aimed to evaluate polymorphisms of photoreceptor genes such as phytochromes and cryptochromes in relation with photoperiodic response as local adaptation to habitat environment.
First, we accomplished to construct basement for comparative physiological studies on PHYE of Cardamine nipponica(Brassicaceae), of which exhibits north-south differentiation in the Japanese archipelago. We isolated the northern and southern PHYE genotypes, and succeeded in cloning the N'-terminal part of the gene.
Second, we analyzed gene polymorphisms and geographical structure of photoreceptor genes such as PHY and CRY of Lotus japonicus. This plant harbored plural SNPs in PHYA, PHYB and PHYE, of which most of them were located in functional domains such as GAF loop.

Report

(4 results)
  • 2011 Annual Research Report   Final Research Report ( PDF )
  • 2010 Annual Research Report
  • 2009 Annual Research Report
  • Research Products

    (35 results)

All 2012 2011 2010 2009 Other

All Journal Article (15 results) (of which Peer Reviewed: 11 results) Presentation (14 results) Book (3 results) Remarks (3 results)

  • [Journal Article] Evolution of an alpine endemic plant at the arctic-alpine range periphery following Pleistocene climatic oscillations2012

    • Author(s)
      Ikeda, H., Carlsen, T., Fujii, N., Brochmann, C, Setoguchi, H.
    • Journal Title

      New Phytologist

      Volume: 194 Issue: 2 Pages: 583-594

    • DOI

      10.1111/j.1469-8137.2012.04061.x

    • Related Report
      2011 Annual Research Report 2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Polymorphismof DNA sequences of crypto chrome genes is not associated with the photoperiodic flowering of wild soybean along a latitudinal cline2012

    • Author(s)
      Ishibashi, N., Setoguchi, H.
    • Journal Title

      Journal of Plant Research

      Volume: (in press) Issue: 4 Pages: 483-488

    • DOI

      10.1007/s10265-011-0470-6

    • Related Report
      2011 Annual Research Report 2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Population fragmentation caused randomly fixed genotype in each population of Arabidopsis kamchatica in the Japanese archinelago2012

    • Author(s)
      Higashi, H., Ikeda, H., Setoguchi, H.
    • Journal Title

      Journal of Plant Research

      Volume: 125 Issue: 2 Pages: 223-233

    • DOI

      10.1007/s10265-011-0436-8

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Molecular evolution of crypto chrome genes and the evolutionary manner of photoreceptor genes in Card amine nipponica2011

    • Author(s)
      Ikeda H., Fujii N., Setoguchi H
    • Journal Title

      Journal of Plant Research

      Volume: 124 Issue: 1 Pages: 85-92

    • DOI

      10.1007/s10265-010-0361-2

    • Related Report
      2011 Annual Research Report 2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Molecular evolution of cryptochrome genes and the evolutionary manner of photoreceptor genes in Cardamine nipponica(Brassicaceae).2011

    • Author(s)
      Ikeda H., Setoguchi H.
    • Journal Title

      Journal of Plant Research

      Volume: 124 Pages: 85-92

    • NAID

      10027701713

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Natural selection on PHYE by latitude in the Japanese archipelago : insight from locus specificphylogeographic structure in Arcterica nana2010

    • Author(s)
      Ikeda H., Setoguchi H
    • Journal Title

      Molecular Ecology

      Volume: 19 Issue: 13 Pages: 2779-2791

    • DOI

      10.1111/j.1365-294x.2010.04700.x

    • Related Report
      2011 Final Research Report
  • [Journal Article] Molecular phylogeny and habitat diversification of the genus Farfugium(Asteraceae) based on nuclear rDNA and plastid DNA2010

    • Author(s)
      Nomura, N., Takaso, T., et al
    • Journal Title

      Annals of Botany

      Volume: 106 Issue: 3 Pages: 467-482

    • DOI

      10.1093/aob/mcq139

    • Related Report
      2011 Final Research Report
  • [Journal Article] Local adaptation along with latitude shaped the locus specific geographic structure on PHYE of Arcterica nana(Ericaceae)2010

    • Author(s)
      Ikeda H., Setoguchi H.
    • Journal Title

      Molecular Ecology

      Volume: 19 Pages: 2779-2791

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Genomic structure of lowland and highland ecotypes of Arabidopsis halleri ssp.gemmifera(Brassicacese)on Mt Ibuki.2010

    • Author(s)
      Ikeda, H., Setoguchi, H.Morinaga, S.
    • Journal Title

      Acta Phytotaxonomica et Geobotanica

      Volume: 61 Pages: 21-26

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Local adaptation along with latitude shaped the locus specific geographic structure on PHYE of Arcterica nana (Ericaceae)2010

    • Author(s)
      Ikeda H., Setoguchi H.
    • Journal Title

      Molecular Ecology

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Molecular evolution of cryptochrome genes and the evolutionary manner of photoreceptor genes in Cardamine nipponica (Brassicaceae)2010

    • Author(s)
      Ikeda H., Fujii N., Setoguchi H.
    • Journal Title

      Journal of Plant Research

    • NAID

      10027701713

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Application of the isolation with migration model demonstrated the intraspecific vicariancehistory within Japanese endemic alpine plant2009

    • Author(s)
      Ikeda, H., Fujii, N., Setoguchi, H
    • Journal Title

      Molecular Biology and Evolution

      Volume: 26 Issue: 10 Pages: 2207-2216

    • DOI

      10.1093/molbev/msp128

    • Related Report
      2011 Final Research Report
  • [Journal Article] Molelular evolution of phytochromes in Cardamine nipponica(Brassicaceae) suggests the involvement of PHYE in local adaptation2009

    • Author(s)
      Ikeda, H., Fujii, N., Setoguchi, H
    • Journal Title

      Genetics

      Volume: 182 Issue: 2 Pages: 615-622

    • DOI

      10.1534/genetics.109.102152

    • Related Report
      2011 Final Research Report
  • [Journal Article] Isolation with migration model demonstrated the intraspecific vicariance history within Japanese endemic alpine plant, Cardamine nipponica Franch. et Savat. (Brassicaceae)2009

    • Author(s)
      Ikeda, H., Fujii, N., Setoguchi, H.
    • Journal Title

      Molecular Biology and Evolution 26

      Pages: 2207-2216

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Molelular evolution of phytochromes in Cardamine nipponica (Brassicaceae) suggests the involvement of PHYE in local adaptation2009

    • Author(s)
      Ikeda, H., Fujii, N., Setoguchi, H.
    • Journal Title

      Genetics 182

      Pages: 615-622

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Presentation] ミヤコグサの開花時期変異とこれを制御する遺伝子群の多型:種内の進化をもたらす機構2012

    • Author(s)
      呉ハナ・川口正代司・原田久也・瀬戸口浩彰
    • Organizer
      日本植物分類学会第11回大会
    • Place of Presentation
      大阪学院大学
    • Related Report
      2011 Annual Research Report 2011 Final Research Report
  • [Presentation] ツガザクラにおける核遺伝子と葉緑体の矛盾した地理構造2012

    • Author(s)
      池田啓
    • Organizer
      日本植物分類学会第11回大会
    • Place of Presentation
      大阪学院大学
    • Related Report
      2011 Annual Research Report
  • [Presentation] 進化を続ける植物たち:環境適応と植物の種内分化2011

    • Author(s)
      瀬戸口浩彰
    • Organizer
      首都大学東京バイオコンフェレンス
    • Place of Presentation
      首都大学東京国際交流会館大ホール
    • Year and Date
      2011-11-11
    • Related Report
      2011 Final Research Report
  • [Presentation] 進化を続ける植物たち:環境適応と植物の種内分化2011

    • Author(s)
      瀬戸口浩彰
    • Organizer
      首都大学東京バイオコンフェレンス
    • Place of Presentation
      首都大学東京(招待講演)
    • Year and Date
      2011-11-11
    • Related Report
      2011 Annual Research Report
  • [Presentation] 更新世の気候変動に伴う遺伝子浸透:Cardaminebellidifolia によるミヤマタネツケバナ(Cardamine nipponica)への一方向性遺伝子浸透2011

    • Author(s)
      池田啓, Lars Erik Johannessen, 藤井紀行, Christian Brochmann, 瀬戸口浩彰
    • Organizer
      日本植物学会第74回大会
    • Place of Presentation
      中部大学(愛知県春日井市)
    • Year and Date
      2011-09-10
    • Related Report
      2010 Annual Research Report
  • [Presentation] 日本におけるダイズ野生種ツルマメのクリプトクロム遺伝子の分子進化2011

    • Author(s)
      石橋宣史・瀬戸口浩彰
    • Organizer
      日本植物学会第75回大会
    • Place of Presentation
      東京大学
    • Related Report
      2011 Final Research Report
  • [Presentation] 日本産ミヤコグサにおける開花特性と光受容体遺伝子群の多型.2011

    • Author(s)
      呉ハナ, 立石庸一, 長谷あきら, 瀬戸口浩彰
    • Organizer
      日本植物学会第75回大会
    • Place of Presentation
      東京大学
    • Related Report
      2011 Final Research Report
  • [Presentation] コメバツガザクラ(ツツジ科)の系統地理とPHYE遺伝子における自然選択2011

    • Author(s)
      池田啓, 瀬戸口浩彰
    • Organizer
      日本植物分類学会第9回大会
    • Place of Presentation
      愛知教育大学
    • Related Report
      2011 Final Research Report
  • [Presentation] 日本におけるダイス野生種ツルマメのクリプトクロム遺伝子の分子進化2011

    • Author(s)
      石橋宣史・瀬戸口浩彰
    • Organizer
      日本植物学会第75回大会
    • Place of Presentation
      東京大学(駒場キャンパス)
    • Related Report
      2011 Annual Research Report
  • [Presentation] コメバツガザクラ (ツツジ科) の系統地理とPHYE遺伝子における自然選択2010

    • Author(s)
      池田啓, 瀬戸口浩彰
    • Organizer
      日本植物分類学会第9回大会
    • Place of Presentation
      愛知教育大学
    • Related Report
      2009 Annual Research Report
  • [Presentation] ミヤマタネツケバナ(Card amine nipponica)における青色光受容体CRY遺伝子の系統地理2009

    • Author(s)
      池田啓, 藤井紀行, 瀬戸口浩彰
    • Organizer
      日本植物学会第73回大会
    • Place of Presentation
      山形大学
    • Related Report
      2011 Final Research Report
  • [Presentation] Molecular evolution of phytochromes in Cardaminenipponica(Brassicaceae) suggests the involvement of PHYE in local adaptation2009

    • Author(s)
      池田啓, 藤井紀行, 瀬戸口浩彰
    • Organizer
      12th Congress European Society for Evolutionary Biology
    • Place of Presentation
      Turin, Italy
    • Related Report
      2011 Final Research Report
  • [Presentation] Molecular evolution of phytochromes in Cardamine nipponica (Brassicaceae) suggests the involvement of PHYE in local adaptation2009

    • Author(s)
      池田啓, 藤井紀行, 瀬戸口浩彰
    • Organizer
      12th Congress European Society for Evolutionary Biology
    • Place of Presentation
      Turin, Italy
    • Related Report
      2009 Annual Research Report
  • [Presentation] ミヤマタネツケバナ (Cardamine nipponica) における青色光受容体CRY遺伝子の系統地理2009

    • Author(s)
      池田啓, 藤井紀行, 瀬戸口浩彰
    • Organizer
      日本植物学会第73回大会
    • Place of Presentation
      山形大学
    • Related Report
      2009 Annual Research Report
  • [Book] 日本の固有植物-国立科学博物館叢書11巻2011

    • Author(s)
      瀬戸口浩彰(分担執筆)
    • Total Pages
      503
    • Publisher
      東海大学出版会
    • Related Report
      2010 Annual Research Report
  • [Book] 高山植物学.高山環境と植物の総合科学-2009

    • Author(s)
      藤井紀行, 池田啓, 瀬戸口浩彰
    • Total Pages
      445
    • Publisher
      共立出版
    • Related Report
      2011 Final Research Report
  • [Book] 増沢武弘編集 : 高山植物学-高山環境と植物の総合科学-2009

    • Author(s)
      藤井紀行, 池田啓, 瀬戸口浩彰
    • Total Pages
      445
    • Publisher
      共立出版
    • Related Report
      2009 Annual Research Report
  • [Remarks]

    • URL

      http://web.mac.com/setoguchi_labo/iWeb/Site/Welcome.html

    • Related Report
      2011 Final Research Report
  • [Remarks]

    • URL

      http://web.mac.com/setoguchi_labo/iWeb/Site/Welcome.html

    • Related Report
      2011 Annual Research Report
  • [Remarks]

    • URL

      http://web.mac.com/setoguchi_labo/iWeb/Site/Welcome.html

    • Related Report
      2010 Annual Research Report

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Published: 2009-04-01   Modified: 2016-04-21  

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