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Structural Characterization of Heme-mediated Signaling Mechanism in Protein Regulation System

Research Project

Project/Area Number 21370040
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Structural biochemistry
Research InstitutionHokkaido University

Principal Investigator

ISHIMORI Koichiro  北海道大学, 大学院・理学研究院, 教授 (20192487)

Co-Investigator(Kenkyū-buntansha) UCHIDA Takeshi  北海道大学, 大学院・理学研究院, 助教 (30343742)
Project Period (FY) 2009 – 2011
Project Status Completed (Fiscal Year 2011)
Budget Amount *help
¥18,980,000 (Direct Cost: ¥14,600,000、Indirect Cost: ¥4,380,000)
Fiscal Year 2011: ¥3,640,000 (Direct Cost: ¥2,800,000、Indirect Cost: ¥840,000)
Fiscal Year 2010: ¥4,550,000 (Direct Cost: ¥3,500,000、Indirect Cost: ¥1,050,000)
Fiscal Year 2009: ¥10,790,000 (Direct Cost: ¥8,300,000、Indirect Cost: ¥2,490,000)
Keywordsヘム依存性制御蛋白質 / 酸化修飾 / 活性酸素 / ヘム生合成 / 鉄代謝
Research Abstract

In this research project, we characterized the heme binding in Iron Response Regulator (Irr) and Iron Regulatory Protein (IRP) and examined their functional significance. We spectroscopically identified the heme binding sites of Irr and, based on the structural information, a molecular mechanism of heme-induced oxidative modification in Irr was proposed. The heme binding sites of IRP were also determined and a new mechanism for the translational regulation by binding of heme was suggested in IRP. These new findings in this research project shed new light on the functional significance of heme in vivo.

Report

(4 results)
  • 2011 Annual Research Report   Final Research Report ( PDF )
  • 2010 Annual Research Report
  • 2009 Annual Research Report
  • Research Products

    (19 results)

All 2012 2011 2010 2009 Other

All Journal Article (6 results) (of which Peer Reviewed: 6 results) Presentation (11 results) Book (1 results) Remarks (1 results)

  • [Journal Article] A Heme Degradation Enzyme, HutZ, fromVibrio cholera2012

    • Author(s)
      Uchida, T., Sekine, Y., Matsui, T., Ikeda-Saito, M., Ishimori, K.
    • Journal Title

      Chem. Comm.

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Unusual Heme Binding in the Bacterial Iron Response Regulator Protein (Irr) : Spectral Characterization of Heme Binding to Heme Regulatory Motif2011

    • Author(s)
      Ishikawa, H., Nakagaki, M., Bamba, A., Uchida, T., Hori, H., O'Brian, M. R., Iwai, K., Ishimori, K.
    • Journal Title

      Biochemistry

      Volume: 50(6) Pages: 1016-1022

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Unusual Heme Binding in the Bacterial Iron Response Regulator Protein (Irr) : Spectral Characterization of Heme Binding to Heme Regulatory Motif2011

    • Author(s)
      Ishikawa, H.
    • Journal Title

      Biochemistry

      Volume: 50 Pages: 1016-1022

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Molecular Oxygen Regulates the Enzymatic Activity of a Heme-containing Diguanylate Cyclase (HemDGC) for the Synthesis of Cyclic di-GMP2010

    • Author(s)
      Sawai, H., Yoshioka, S., Uchida, T., Hyodo, M., Hayakawa, Y., Ishimori, K., Aono, S.
    • Journal Title

      Biochim. Biophys. Acta

      Volume: 1804(1) Pages: 166-172

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Molecular Oxygen Regulates the Enzymatic Activity oF a Heme-containing Diguanylate Cyclase (HemDGC) for the Synthesis of Cyclic di-GMP2010

    • Author(s)
      Sawai, H.
    • Journal Title

      Biochimca Biophysica Acta

      Volume: 1804 Pages: 166-172

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Molecular Oxygen Regulates the Enzymatic Activity of a Heme-containing Diguanylate Cyclase(HemDGC)for the Synthesis of Cyclic di-GMP2010

    • Author(s)
      Sawai, H., et al.
    • Journal Title

      Biochim.Biophys.Acta 1804

      Pages: 166-172

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Presentation] Function of Heme Regulatory Motif in the Oxidative Modification for Transcriptional Regulation2011

    • Author(s)
      Taira Tatsukawa
    • Organizer
      第48回ペプチド討論会
    • Place of Presentation
      札幌コンベンションセンター(札幌市)
    • Year and Date
      2011-09-27
    • Related Report
      2011 Annual Research Report
  • [Presentation] ヘムの結合による鉄代謝制御タンパク質IRPの機能制御機構2011

    • Author(s)
      石森浩一郎
    • Organizer
      第84回日本生化学会大会
    • Place of Presentation
      京都国際会館(京都市)(招待講演)
    • Year and Date
      2011-09-21
    • Related Report
      2011 Annual Research Report
  • [Presentation] Oxygen Activation and Oxidative Modification in Heme-regulated Proteins2011

    • Author(s)
      Ishimori, K.
    • Organizer
      14th Asian Chemical Congress
    • Place of Presentation
      Queen Sirikit National Convention Center, タイ国,バンコク市
    • Year and Date
      2011-09-06
    • Related Report
      2011 Final Research Report
  • [Presentation] Oxygen Activation and Oxidative Modification in Heme-regulated Proteins2011

    • Author(s)
      石森浩一郎
    • Organizer
      14th Asian Chemical Congress
    • Place of Presentation
      Queen Sirikit National Convention Center(タイ国)(招待講演)
    • Year and Date
      2011-09-06
    • Related Report
      2011 Annual Research Report
  • [Presentation] 鉄代謝制御蛋白質(IRPs)の標的RNA結合における制御機構の検討2011

    • Author(s)
      渡辺祐太
    • Organizer
      第64回日本酸化ストレス学会学術集会
    • Place of Presentation
      ルスツリゾート(留寿都村)
    • Year and Date
      2011-07-02
    • Related Report
      2011 Annual Research Report
  • [Presentation] 鉄代謝制御タンパク質IRP2の機能発現における酸化修飾機構2011

    • Author(s)
      宮地祐樹
    • Organizer
      第64回日本酸化ストレス学会学術集会
    • Place of Presentation
      ルスツリゾート(留寿都村)
    • Year and Date
      2011-07-02
    • Related Report
      2011 Annual Research Report
  • [Presentation] Heffle-mediated Iron Regulation Mechanism2011

    • Author(s)
      石森浩一郎
    • Organizer
      日本生化学会九州支部例会シンポジウム
    • Place of Presentation
      久留米医科大学(久留米市)(招待講演)
    • Year and Date
      2011-05-21
    • Related Report
      2011 Annual Research Report
  • [Presentation] Oxidative modification and its functional significance in heme-regulated protein2010

    • Author(s)
      Ishimori, K.
    • Organizer
      Pacifichem 2010
    • Place of Presentation
      ハワイコンベンションセンター,米国,ホノルル市
    • Year and Date
      2010-12-15
    • Related Report
      2011 Final Research Report
  • [Presentation] Oxidative modification and its functional significance in heme-regulated protein2010

    • Author(s)
      Ishimori, K.
    • Organizer
      Pacifichem 2010
    • Place of Presentation
      米国,ハワイ,ホノルル市 招待講演
    • Year and Date
      2010-12-15
    • Related Report
      2010 Annual Research Report
  • [Presentation] Iron Response Regulator Protein Is a Self-oxidative Oxidase-transcription Factor : A Mechanism for Heme-mediated Self-oxidation2009

    • Author(s)
      Ishimori, K.
    • Organizer
      14th International Conference on Biological Inorganic Chemistry(ICBIC14)
    • Place of Presentation
      名古屋国際会議場(愛知県)
    • Year and Date
      2009-07-30
    • Related Report
      2011 Final Research Report
  • [Presentation] Iron Response Regulator Protein Is a Self-oxidative Oxidase-transcription Factor : A Mechanism for Heme-mediated Self-oxidation2009

    • Author(s)
      Ishimori, K.
    • Organizer
      14^<th> International Conference on Biological Inorganic Chemistry(ICBIC14)
    • Place of Presentation
      名古屋国際会議場(愛知県)
    • Year and Date
      2009-07-30
    • Related Report
      2009 Annual Research Report
  • [Book] Heme binding characteristics of mouse PER1, a transcriptional regulatory factor associated with circadian rhythms2011

    • Author(s)
      R. Nagata, M. Harada, K. Kitanishi, J. Igarashi, T. Uchida, K. Ishimori and T. Shimizu
    • Publisher
      Nova Science Publishers
    • Related Report
      2011 Final Research Report
  • [Remarks]

    • URL

      http://wwwchem.sci.hokudai.ac.jp/~stchem/

    • Related Report
      2011 Final Research Report

URL: 

Published: 2009-04-01   Modified: 2016-04-21  

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