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Understanding the mechanism of amyloid fibrillation on the basis of single fibril and real-time observation

Research Project

Project/Area Number 21370044
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Structural biochemistry
Research InstitutionOsaka University

Principal Investigator

GOTO Yuji)  大阪大学, 蛋白質研究所, 教授 (40153770)

Co-Investigator(Kenkyū-buntansha) SAKURAI Kazumasa  大阪大学, 蛋白質研究所, 助教 (10403015)
Co-Investigator(Renkei-kenkyūsha) FUJIWARA Toshimichi  大阪大学, 蛋白質研究所, 教授 (20242381)
CHATANI Eri  神戸大学, 大学院・理学研究科, 准教授 (00432493)
NAIKI Hironobu  福井大学, 医学部, 教授 (10227704)
Project Period (FY) 2009 – 2011
Project Status Completed (Fiscal Year 2011)
Budget Amount *help
¥18,200,000 (Direct Cost: ¥14,000,000、Indirect Cost: ¥4,200,000)
Fiscal Year 2011: ¥3,250,000 (Direct Cost: ¥2,500,000、Indirect Cost: ¥750,000)
Fiscal Year 2010: ¥6,890,000 (Direct Cost: ¥5,300,000、Indirect Cost: ¥1,590,000)
Fiscal Year 2009: ¥8,060,000 (Direct Cost: ¥6,200,000、Indirect Cost: ¥1,860,000)
Keywords変性とフォールディング / アミロイド線維 / 蛋白質の凝集 / 蛍光顕微鏡 / 超音波 / アミロイド蛋白質 / 脳神経疾患 / 透析アミロイドーシス / アルツハイマー病 / 糖尿病 / NMR
Research Abstract

We studied the mechanism of amyloid fibrillation with a unique technique in which total internal reflection fluorescence microscopy is combined with amyloid-specific ThT. To gain insights into the possible kinetic intermediates, we performed hydrogen/ deuterium exchange of amide protons during fibril elongation. Combining the use of ultrasonication and a microplate reader, we propose an efficient approach to studying the potential of proteins to form amyloid fibrils. Taken all results together, we propose that the amyloid fibrils formed via a nucleation-dependent mechanism in a supersaturated solution, analogous to crystallization.

Report

(4 results)
  • 2011 Annual Research Report   Final Research Report ( PDF )
  • 2010 Annual Research Report
  • 2009 Annual Research Report
  • Research Products

    (58 results)

All 2011 2010 2009 Other

All Journal Article (35 results) (of which Peer Reviewed: 35 results) Presentation (18 results) Book (2 results) Remarks (3 results)

  • [Journal Article] Ultrasonication-dependent acceleration of amyloid fibril formation2011

    • Author(s)
      So, M., Yagi, H., Sakurai, K., Ogi, H., Naiki, H. & Goto, Y.
    • Journal Title

      J. Mol. Biol.

      Volume: 412 Pages: 568-577

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Hexafluoroisopropanol induces amyloid fibrils of islet amyloid polypeptide by enhancing both hydrophobic and electrostatic interactions2011

    • Author(s)
      Yanagi, K., Ashizaki, M., Yagi, H., Sakurai, K., Lee, Y. H. & Goto, Y.
    • Journal Title

      J. Biol. Chem.

      Volume: 286 Pages: 23959-23966

    • NAID

      120006557643

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Destruction of amyloid fibrils of keratoepithelin peptides by laser irradiation coupled with amyloid-specific thioflavin2011

    • Author(s)
      T. Ozawa, D., Kaji, Y., Yagi, H., Sakurai, K., Kawakami, T., Naiki, N. & Goto, Y.
    • Journal Title

      J. Biol. Chem.

      Volume: 286 Pages: 10856-10863

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Seed-dependent deposition behavior of Aβpeptides studied with wireless quartz-crystal-microbalance biosensor2011

    • Author(s)
      Ogi, H., Fukunishi, Y., Yanagida, T., Yagi, H., Goto, Y., Fukushima, M., Uesugi, K., Hirao
    • Journal Title

      M. Anal. Chem.

      Volume: 83 Pages: 4982-4988

    • NAID

      120007148353

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] A circumventing role for the non-native intermediate in the folding ofβ-lactoglobulin2011

    • Author(s)
      Sakurai, K., Fujioka, S., Konuma, T., Yagi, M. & Goto, Y.
    • Journal Title

      Biochemistry

      Volume: 50 Pages: 6498-6507

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Binding energetics of ferredoxin-NADP+ reductase with ferredoxin and its relation to function2011

    • Author(s)
      Lee, Y.-H., Ikegami, T., Standley, D. M., Sakurai, K., Hase, T. & Goto, Y.
    • Journal Title

      ChemBio. Chem.

      Volume: 12 Pages: 2062-2070

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Reversible heat-induced dissociation ofβ2-microglobulin amyloid fibrils2011

    • Author(s)
      Kardos, J., Micsonai, A., Pa. l-Ga. bor, H., Petrik, E., Gra. f, L., Kova. cs, J., Lee, Y. H., Naiki, H. & Goto, Y.
    • Journal Title

      Biochemistry

      Volume: 50 Pages: 3211-3220

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Inhibition of. 2-microglobulin amyloid fibril formation byα2-macroglobulin2011

    • Author(s)
      Ozawa, D., Hasegawa, K., Lee, Y. H., Sakurai, K., Yanagi, K., Ookoshi, T., Goto, Y., Naiki, H.
    • Journal Title

      J. Biol. Chem.

      Volume: 286 Pages: 9668-9676

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Kinetic intermediates ofβ2-microglobulin fibril elongation probed by pulse-labeling H/ D exchange combined with NMR analysis2011

    • Author(s)
      Konuma, T., Chatani, E., Yagi, M., Sakurai, K., Ikegami, T., Naiki, H. & Goto, Y.
    • Journal Title

      J. Mol. Biol.

      Volume: 405 Pages: 851-862

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Ultrasonication-dependent acceleration of amyloid fibril formation2011

    • Author(s)
      So, M., et al., Goto, Yuji
    • Journal Title

      J.Mol.Biol.

      Volume: 412(4) Issue: 4 Pages: 568-577

    • DOI

      10.1016/j.jmb.2011.07.069

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Destruction of amyloid fibrils of keratoepithelin peptides by laser irradiation coupled with amyloid-specific thioflavin T.2011

    • Author(s)
      Ozawa, D., et al., Goto, Yuji
    • Journal Title

      J.Biol.Chem.

      Volume: 286(12) Issue: 12 Pages: 10856-10863

    • DOI

      10.1074/jbc.m111.222901

    • NAID

      120006557644

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Hexafluoroisopropanol induces amyloid fibrils of islet amyloid polypeptide by enhancing both hydrophobic and electrostatic interactions2011

    • Author(s)
      Yanagi, K., et al., Goto, Yuji
    • Journal Title

      J.Biol.Chem.

      Volume: 286(27) Issue: 27 Pages: 23959-23966

    • DOI

      10.1074/jbc.m111.226688

    • NAID

      120006557643

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Laser-induced propagation and destruction of amyloidβfibrils2010

    • Author(s)
      Yagi, H., Ozawa, D., Sakurai, K., Kawakami, T., Kuyama, H., Nishimura, O., Shimanouchi, T., Kuboi, R., Naiki, H. & Goto, Y.
    • Journal Title

      J. Biol. Chem.

      Volume: 285 Pages: 19660-19667

    • NAID

      120006557646

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Amyloid fibrils of the constant domain of immunoglobulin light chain2010

    • Author(s)
      Yamamoto, K., Yagi, H., Lee, Y. H., Kardos, K., Hagihara, Y., Naiki, H. & Goto, Y.
    • Journal Title

      FEBS Lett.

      Volume: 584 Pages: 3348-3353

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Isolation of short peptide fragments fromα-synuclein fibril core identifies a residue important for fibril nucleation : a possible implication for diagnostic applications2010

    • Author(s)
      Yagi, H., Takeuchi, H., Ogawa, S., Ito, N., Sakane, I., Hongo, K., Mizobata, T., Goto, Y. & Kawata, Y.
    • Journal Title

      Biochim. Biophys. Acta

      Volume: 1804 Pages: 2077-2087

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] アミロイドーシス発症の分子機構解明2010

    • Author(s)
      八木寿梓、後藤祐児
    • Journal Title

      メディカルバイオ

      Volume: 7 Pages: 30-31

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Direct observation of minimum-sized amyloid fibrils using solution NMR spectroscopy2010

    • Author(s)
      Yoshimura, Y., Sakurai, K., Lee, Y.-H., Ikegami, T., Chatani, E., Naiki, H. & Goto, Y.
    • Journal Title

      Protein Sci.

      Volume: 19 Pages: 2347-2355

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Pre-steady state kinetic analysis for the elongation of amyloid fibrils ofβ2-microglobulin with tryptophan mutagenesis2010

    • Author(s)
      Chatani, E., Ohnishi1, R., Konuma, T., Sakurai, K., Naiki, N. & Goto, Y.
    • Journal Title

      J. Mol. Biol.

      Volume: 400 Pages: 1057-1066

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] タンパク質のアミロイド形成-過飽和条件で揺らぎが引きおこす晶析現象2010

    • Author(s)
      後藤祐児、李映昊
    • Journal Title

      メディカルバイオ10月号別冊(寺嶋正秀監修)

      Pages: 38-34

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Laser-induced propagation and destruction of amyloid β fibrils.2010

    • Author(s)
      Yagi, Hisashi ; Goto, Yuji
    • Journal Title

      J.Biol.Chem.

      Volume: 285(25) Pages: 19660-19667

    • NAID

      120006557646

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Pre-steady state kinetic analysis for the elongation of amyloid fibrils of β2-microglobulin with tryptophan mutagenesis.2010

    • Author(s)
      Chatani, Eri ; Goto, Yuji
    • Journal Title

      J.Mol.Biol.

      Volume: 400(5) Pages: 1257-1066

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Direct observation of minimum-sized amyloid fibrils using solution NMR spectroscopy.2010

    • Author(s)
      Yoshimura, Yuichi ; Goto, Yuji
    • Journal Title

      Protein Sci.

      Volume: 19(12) Pages: 2347-2355

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Critical role of interfaces and agitation on the nucleation of Aβ amyloid fibrils at low concentrations of Aβ monomers2010

    • Author(s)
      Morinaga, A., et al.
    • Journal Title

      Biochim.Biophys.Acta 1804(4)

      Pages: 986-995

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Differences in the molecular structure of β2-microglobulin between two morphologically different amyloid fibrils2010

    • Author(s)
      Hiramatsu, H., et al.
    • Journal Title

      Biochemistry 49(4)

      Pages: 742-751

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Ultrasonication establishes the equilibrium between production and breakdown leading to the minimum-sized amyloid fibrils2009

    • Author(s)
      Chatani, E., Lee, Y.-H., Yagi, H., Yoshimura, Y., Naiki, N. & Goto, Y.
    • Journal Title

      Proc. Natl. Acad. Sci. USA

      Volume: 106 Pages: 11119-11124

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Thermal response with exothermic effects of. 2-microglobulin amyloid fibrils and fibrillation2009

    • Author(s)
      Sasahara, K., Yagi, H., Naiki, H. & Goto, Y.
    • Journal Title

      J. Mol. Biol.

      Volume: 389 Pages: 584-594

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Destruction of amyloid fibrils of aβ2-microglobulin fragment by laser beam irradiation2009

    • Author(s)
      Ozawa, D., Yagi, H., Ban, T., Kameda, A., Kawakami, T., Naiki, H., & Goto, Y.
    • Journal Title

      J. Biol. Chem.

      Volume: 284 Pages: 1009-1017

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Branching in amyloid fibril growth. Andersen2009

    • Author(s)
      C. B., Yagi, H., Manno, M., Martorana, V., Ban, T., Christiansen, G., Otzen, D., Goto, Y. & Rischel, C.
    • Journal Title

      Biophys. J.

      Volume: 96 Pages: 1529-1536

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] NMR-based characterization of a refolding intermediate ofβ2-microglobulin labeled amino acid selectively using a wheat germ cell-free system2009

    • Author(s)
      Kameda, A., Morita, E.-H., Sakurai, K., Naiki, N. & Goto, Y.
    • Journal Title

      Protein Sci.

      Volume: 18 Pages: 1592-1601

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Structural dynamics and folding ofβ-lactoglobulin probed by heteronuclear NMR2009

    • Author(s)
      Sakurai, K., Konuma, T., Yagi, M. & Goto, Y.
    • Journal Title

      Biochim. Biophys. Acta

      Volume: 1790 Pages: 527-537

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] A comprehensive model for packing and hydration for amyloid fibrils of. 2-microglobulin2009

    • Author(s)
      Lee, Y.-H., Chatani, E., Sasahara, K., Naiki, H. & Goto, Y.
    • Journal Title

      J. Biol. Chem.

      Volume: 284 Pages: 2169-2175

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Thermal response with exothermic effects of β2-microglobulin amyloid fibrils and fibrillation.2009

    • Author(s)
      Sasahara, K., et al.
    • Journal Title

      J.Mol.Biol. 389(3)

      Pages: 584-594

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Thermal response with exothermic effects of β2-microglobulin amyloid fibrils and fibrillation.2009

    • Author(s)
      Pal-Gabor, H., et al.
    • Journal Title

      Biochemistry 48(24),

      Pages: 5689-5699

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] NMR-based characterization of a refolding intermediate of β2-microglobulin labeled amino acid selectively using a wheat germ cell-free system.2009

    • Author(s)
      Kameda, A., et al.
    • Journal Title

      Protein Science 18(8)

      Pages: 1592-1601

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Ultrasonication establishes the equilibrium between production and breakdown leading to the minimum-sized amyloid fibrils2009

    • Author(s)
      Chatani, E., et al.
    • Journal Title

      Proc.Natl.Acad.Sci.USA 106(27)

      Pages: 11119-11124

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Presentation] 「蛋白質のフォールディングと異常凝集の一般原理の解明を目指して」2011

    • Author(s)
      後藤祐児
    • Organizer
      関西学院大学・理工学部50周年記念講演会、文科省オープン・リサーチセンター成果報告会「ナノマテリアルと生体分子の物理化学」
    • Place of Presentation
      関西学院大学(西宮)
    • Year and Date
      2011-10-08
    • Related Report
      2011 Final Research Report
  • [Presentation] 蛋白質のフォールディングと異常凝集の一般原理の解明を目指して2011

    • Author(s)
      後藤祐児
    • Organizer
      関西学院大学・理工学部50周年記念講演会、文科省オープン・リサーチセンター成果報告会「ナノマテリアルと生体分子の物理化学」
    • Place of Presentation
      関西学院大学、西宮(招待講演)
    • Year and Date
      2011-10-08
    • Related Report
      2011 Annual Research Report
  • [Presentation] Toward understanding a unifying principle of protein folding and aggregation2011

    • Author(s)
      Goto, Y.
    • Organizer
      The First Korean Protein Society Symposium
    • Place of Presentation
      Seoul National University, Seoul, Korea
    • Year and Date
      2011-09-23
    • Related Report
      2011 Final Research Report
  • [Presentation] Toward understanding a unifying principle of protein folding and aggregation2011

    • Author(s)
      後藤祐児
    • Organizer
      The First Korean Protein Society Symposium
    • Place of Presentation
      Seoul National University, Seoul, Korea(招待講演)
    • Year and Date
      2011-09-23
    • Related Report
      2011 Annual Research Report
  • [Presentation] 「蛋白質のフォールディングとアミロイド線維形成」2011

    • Author(s)
      後藤祐児
    • Organizer
      日本物理学会2011年周期大会シンポジウム「巨大分子~サブミクロン粒子の自己集積」
    • Place of Presentation
      富山大学
    • Year and Date
      2011-09-21
    • Related Report
      2011 Final Research Report
  • [Presentation] 蛋白質のフォールディングとアミロイド線維形成2011

    • Author(s)
      後藤祐児
    • Organizer
      日本物理学会2011年周期大会シンポジウム「巨大分子~サブミクロン粒子の自己集積」
    • Place of Presentation
      富山大学、富山(招待講演)
    • Year and Date
      2011-09-21
    • Related Report
      2011 Annual Research Report
  • [Presentation] Toward understanding a unifying principle of protein folding and aggregation2011

    • Author(s)
      Goto, Y.
    • Organizer
      International Symposium of the Protein Society of Thailand
    • Place of Presentation
      Chulabhorn Conference Center, Bangkok, Thailand
    • Year and Date
      2011-08-31
    • Related Report
      2011 Final Research Report
  • [Presentation] Toward understanding a unifying principle of protein folding and aggregation2011

    • Author(s)
      後藤祐児
    • Organizer
      International Symposium of the Protein Society of Thailand
    • Place of Presentation
      Chulabhorn Conference Center, Bangkok, Thailand(招待講演)
    • Year and Date
      2011-08-31
    • Related Report
      2011 Annual Research Report
  • [Presentation] Visualization of amyloid fibril formation of proteins.2010

    • Author(s)
      Goto, Yuji
    • Organizer
      10^<th> KIAS Conference on Protein Structure and Function
    • Place of Presentation
      KIAS, Seoul, Korea
    • Year and Date
      2010-10-02
    • Related Report
      2010 Annual Research Report
  • [Presentation] Amyloid fibril growth visualized by thioflavin T fluorescence and probed by H/ D exchange2010

    • Author(s)
      Goto, Y.
    • Organizer
      Gordon Research Conference : Protein Folding Dynamics
    • Place of Presentation
      Ventura CA, USA
    • Related Report
      2011 Final Research Report
  • [Presentation] Amyloid fibril growth visualized by thioflavin T fluorescence and probed by H/ D exchange2010

    • Author(s)
      Goto, Y.
    • Organizer
      Symposium on Structure and Folding of Disease Related Proteins
    • Place of Presentation
      Seoul National University, Seoul, Korea
    • Related Report
      2011 Final Research Report
  • [Presentation] Visualization of amyloid fibril formation of proteins2010

    • Author(s)
      Goto, Y.
    • Organizer
      10^<th> KIAS Conference on Protein Structure and Function
    • Place of Presentation
      Seoul, Korea
    • Related Report
      2011 Final Research Report
  • [Presentation] Amyloid fibril growth visualized by thioflavin T fluorescence and probed by H/D exchange.2010

    • Author(s)
      Goto, Yuji
    • Organizer
      Gordon Research Conference : Protein Folding Dynamics,
    • Place of Presentation
      Ventura, USA
    • Related Report
      2009 Annual Research Report
  • [Presentation] Amyloid fibril growth visualized by thioflavin T fluorescence and probed by H/D exchange.2009

    • Author(s)
      Goto, Yuji
    • Organizer
      The 23rd Symposium of The Protein Society
    • Place of Presentation
      Boston, USA
    • Year and Date
      2009-07-26
    • Related Report
      2009 Annual Research Report
  • [Presentation] Folding and amyloid fibril formation of proteins.2009

    • Author(s)
      Goto, Yuji
    • Organizer
      The 66th KSBMB Annual Meeting
    • Place of Presentation
      Seoul, Korea
    • Year and Date
      2009-05-12
    • Related Report
      2009 Annual Research Report
  • [Presentation] Amyloid fibril growth visualized by thioflavin T fluorescence and probed by H/ D exchange2009

    • Author(s)
      Goto, Y.
    • Organizer
      International Bunsen Discussion Meeting on Structure of Amyloid Fibrils and Mechanism of Amyloid Formation
    • Place of Presentation
      Universitat Halle, Halle an der Saale, Germany
    • Related Report
      2011 Final Research Report
  • [Presentation] Amyloid fibril growth visualized by thioflavin T fluorescence and probed by H/ D exchange2009

    • Author(s)
      Goto, Y.
    • Organizer
      The 23rd Symposium of The Protein Society
    • Place of Presentation
      Boston, USA
    • Related Report
      2011 Final Research Report
  • [Presentation] Amyloid fibril growth visualized by thioflavin T fluorescence and probed by H/ D exchange2009

    • Author(s)
      Goto, Y.
    • Organizer
      The 3rd Asian-Pacific Peptide Symposium
    • Place of Presentation
      Jeju island, Korea
    • Related Report
      2011 Final Research Report
  • [Book] Real-time observation of amyloid-βfibril growth by total internal reflection fluorescence miscroscopy2010

    • Author(s)
      Ban, T. & Goto, Y.
    • Publisher
      Protein Misfolding Disease
    • Related Report
      2011 Final Research Report
  • [Book] Water and Biomolecules : Physical Chemistry of Life Phenomena (eds. Kuwajima K, Goto Y, Hirata F, Kataoka M, & Terazima M)2009

    • Author(s)
      Yagi, H., et al.(分担執筆)
    • Publisher
      Springer-Verlag, Berlin and Heidelberg, Germany
    • Related Report
      2009 Annual Research Report
  • [Remarks]

    • URL

      http://www.protein.osaka-u.ac.jp/physical/yoeki.html

    • Related Report
      2011 Annual Research Report
  • [Remarks]

    • URL

      http://www.protein.osaka-u.ac.jp/physical/yoeki.html

    • Related Report
      2010 Annual Research Report
  • [Remarks]

    • URL

      http://www.protein.osaka-u.ac.jp/physical/yoeki.html

    • Related Report
      2009 Annual Research Report

URL: 

Published: 2009-04-01   Modified: 2016-04-21  

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