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Molecular Dissection of the Ribosomal Protein Complex that Plays a as Drive Part of Translation apparatus

Research Project

Project/Area Number 21370078
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Molecular biology
Research InstitutionNiigata University

Principal Investigator

UCHIUMI Toshio  新潟大学, 自然科学系, 教授 (50143764)

Co-Investigator(Kenkyū-buntansha) ITO Kosuke  新潟大学, 自然科学系, 助教 (20502397)
YAO Minn  北海道大学, 大学院・先端生命科学研究院, 准教授 (40311518)
Project Period (FY) 2009 – 2011
Project Status Completed (Fiscal Year 2011)
Budget Amount *help
¥18,590,000 (Direct Cost: ¥14,300,000、Indirect Cost: ¥4,290,000)
Fiscal Year 2011: ¥5,070,000 (Direct Cost: ¥3,900,000、Indirect Cost: ¥1,170,000)
Fiscal Year 2010: ¥5,460,000 (Direct Cost: ¥4,200,000、Indirect Cost: ¥1,260,000)
Fiscal Year 2009: ¥8,060,000 (Direct Cost: ¥6,200,000、Indirect Cost: ¥1,860,000)
Keywordsリボソーム / リボソームタンパク質 / 翻訳 / タンパク質複合体 / 結晶構造 / タンパク質合成 / リボソームストーク / GTPaseセンター / 部位特異的アミノ酸置換
Research Abstract

Ribosomes in all organisms have a unique flexible structure composed of ribosomal protein complex, termed the stalk, which plays a crucial role in ribosome function. In this research subject, we have investigated the structure and function of the ribosomal stalk in a hyperthermophilic archaeon by biochemical and crystallographic analyses. The results showed that the archaeal stalk is composed of aP0 and aP1, which form the heptameric complex aP0(aP1)_2(aP1)_2(aP1)_2, and that the C-terminal sequence, which is shared by aP1 and aP0, directly binds to translation factors. We concluded that the 7 copies of C-terminal tails of aP1/aP0 in the complex participate in efficient recruitment of translation factors onto the ribosome.

Report

(4 results)
  • 2011 Annual Research Report   Final Research Report ( PDF )
  • 2010 Annual Research Report
  • 2009 Annual Research Report
  • Research Products

    (60 results)

All 2012 2011 2010 2009 Other

All Journal Article (18 results) (of which Peer Reviewed: 18 results) Presentation (35 results) Book (1 results) Remarks (5 results) Patent(Industrial Property Rights) (1 results)

  • [Journal Article] Archaealribosomal stalk protein interacts with translation factors in anucleotide-independent manner via itsconserved C terminus2012

    • Author(s)
      Nomura, N., Honda, T., Baba, K., Naganuma, T., Tanzawa, T., Arisaka, F., Noda, M., Uchiyama, S., Tanaka, I., Yao, M., and Uchiumi T.
    • Journal Title

      Proc. Natl. Acad. Sci.

      Volume: 109 Pages: 3748-3753

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Analysis of Chimeric Ribosomal Stalk Complexes from Eukaryotic and Bacterial Sources : Structural Features Responsible for Specificity of Translation Factors2012

    • Author(s)
      Mochizuki, M., Kitamyo, M., Miyoshi, T., Ito, K., and Uchiumi T.
    • Journal Title

      Genes to Cells

      Volume: 17 Pages: 273-284

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Archaeal ribosomal stalk protein interacts with translation factors in a nucleotide-independent manner via its conserved C terminus2012

    • Author(s)
      Nomura, N., 他
    • Journal Title

      Proc.Natl.Acad.Sci.USA

      Volume: 109 Pages: 3748-3753

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Analysis of Chimeric Ribosomal stalk Complexes from Eukaryotic and Bacterial Sources : Structural Features Responsible for Specificity of Translation Factors2012

    • Author(s)
      Mochizuki, M., 他
    • Journal Title

      Genes to Cells

      Volume: 17 Pages: 273-284

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Structural basis for thebinding of IRES RNAs to the head ofthe ribosomal 40S subunit2011

    • Author(s)
      Muhs, M., Yamamoto, H., Ismer, J., Takaku, H., Nashimoto, M., Uchiumi, T., Nakashima, N., Mielke, T., Hildebrand, P. W., Nierhaus, K. H., andSpahn, C. M.
    • Journal Title

      NucleicAcids Res

      Volume: 39 Pages: 5264-5275

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Crystallization and preliminary X-ray analysis of peptidyl-tRNA hydrolase from Escherichia coli in complex with the acceptor-TΨC domain of tRNA2011

    • Author(s)
      Ito K, 他
    • Journal Title

      Acta Crystallogr.Sect F

      Volume: 67 Pages: 1566-1569

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Structural basis for the binding of IRES RNAs to the head of the ribosomal 40S subunit2011

    • Author(s)
      Muhs, M., 他
    • Journal Title

      Nucleic Acids Res.

      Volume: 39 Pages: 5264-5275

    • Related Report
      2011 Annual Research Report 2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] An omnipotent role ofarchaeal EF1αin translationalelongation and termination, and qualitycontrol of protein synthesis2010

    • Author(s)
      Saito, K., Kobayashi, K., Wada, M., Kikuno, I., Takusagawa, A, Mochizuki, M., Uchiumi, T., Ishitani, R., Nureki, O., and Ito, K.
    • Journal Title

      Proc. Natl. Acad. Sci.

      Volume: 107 Pages: 19242-19247

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Structural basis fortranslation factor recruitment to theeukaryotic/archaeal ribosomes2010

    • Author(s)
      Naganuma, T., Nomura, N., Yao, M., Mochizuki, M., Uchiumi, T., and Tanaka, I.
    • Journal Title

      J. Biol. Chem

      Volume: 285 Pages: 4747-4756

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] An omnipotent role of archaeal EF1α in translational elongationand termination, and quality control of protein synthesis2010

    • Author(s)
      Saito, K., 他
    • Journal Title

      Proc.Natl.Acad.Sci.U S A

      Volume: 107 Pages: 19242-19247

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Comparative proteomic analysis of the ribosomes in 5-fluorouracil resistance of a human colon cancer cell line using the radical-free and highly reducing method of two-dimensional polyacrylamide gel electrophoresis2010

    • Author(s)
      Kimura, K., 他
    • Journal Title

      Int.J.Oncol.

      Volume: 37 Pages: 1271-1278

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Structure of bacterial cellulose synthase subunit D octamer with four inner passageways2010

    • Author(s)
      Hu, S.Q., 他
    • Journal Title

      Proc.Natl.Acad.Sci.U S A

      Volume: 107 Pages: 17957-17961

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Structural basis for translation factor recruitment to the eukary otic/archaeal ribosomes.2010

    • Author(s)
      Naganuma, T., 他
    • Journal Title

      J.Biol.Chem. 285

      Pages: 4747-4756

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Multiple gamma-glutamylation : a novel type of post-translational modification in a diapausing Artemia cyst protein.2010

    • Author(s)
      Hasegawa, M., 他
    • Journal Title

      Biochem.Biophys.Res.Commun. 394

      Pages: 36-41

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Structural basis of novel interactions between the small-GTPase and GDI-like domains in prokaryotic Feo Biron transporter2009

    • Author(s)
      Hattori, M., Jin, Y., Nishimasu, H., Tanaka, Y., Mochizuki, M., Uchiumi, T., Ishitani, R., Ito, K., and Nureki, O.
    • Journal Title

      Structure

      Volume: 17 Pages: 1345-1355

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Engineering and characterization of theribosomal L10/L12 stalk complex : astructural element responsible for highturnover of the EF-G-dependent GTPase2009

    • Author(s)
      Miyoshi, T., Nomura, T., and Uchiumi, T.
    • Journal Title

      J. Biol Chem

      Volume: 284 Pages: 85-92

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Engineering and characterization of the ribosomal L10/L12 stalk complex : a structural element responsible for high turnover of the EF-G-dependent GTPase.2009

    • Author(s)
      Miyoshi, T., 他
    • Journal Title

      J.Biol Chem. 284

      Pages: 85-92

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Functional analysis of structural motifs in dicistroviruses.2009

    • Author(s)
      Nakashima, N., 他
    • Journal Title

      Virus Res. 139

      Pages: 137-147

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Presentation] リボソームには複数の"腕"がある2012

    • Author(s)
      内海利男、野村直子、本田貴嘉、馬場健太朗、長沼孝雄、田中勲、姚閔
    • Organizer
      第1回RIBOSOME MEETING
    • Place of Presentation
      広島大学生物生産学部<招待>
    • Year and Date
      2012-03-15
    • Related Report
      2011 Final Research Report
  • [Presentation] リボソームには複数の"腕"がある2012

    • Author(s)
      内海利男, 他
    • Organizer
      第1回RIBOSOME MEETING
    • Place of Presentation
      広島大学生物生産学部(招待講演)
    • Related Report
      2011 Annual Research Report
  • [Presentation] Introduction of a Lepidoptera-specific sequence with in the GTPase-associated center of 28S rRNA into Escherichia coli 23S rRNA : Effects of the mutations2011

    • Author(s)
      Ryo Maruyama, Kazuyuki Yusa, MasahiroMochizuki, Kosuke Ito, Takaomi Nomura, Toshio Uchiumi
    • Organizer
      The 16_<th> Annual Meeting of theRNA Society
    • Place of Presentation
      Kyoto Japan
    • Related Report
      2011 Final Research Report
  • [Presentation] 動物リボソームstalkヘテロ二量体の分子集合モードの解析2011

    • Author(s)
      馬場健太朗、姚閔、田中勲、内海利男
    • Organizer
      第11回日本蛋白質科学会
    • Place of Presentation
      ホテル阪急エキスポパーク・大阪
    • Related Report
      2011 Final Research Report
  • [Presentation] 動物リボソームstalkヘテロ二量体の分子集合モードの解析2011

    • Author(s)
      馬場健太朗, 他
    • Organizer
      第11回日本蛋白質科学会年会
    • Place of Presentation
      ホテル阪急エキスポパーク・大阪
    • Related Report
      2011 Annual Research Report
  • [Presentation] Archaeal elongation factor acts as an omnipotent carrier GTPase in translational elongation, termination and mRNA surveillance2011

    • Author(s)
      Nureki, O., 他
    • Organizer
      The 16^<th> Annual Meeting of the RNA Society
    • Place of Presentation
      Kyoto, Japan
    • Related Report
      2011 Annual Research Report
  • [Presentation] Structural Basis of the Substrate Recognition Mechanisms of Peptidyl-tRNA Hydrolase from Escherichia coli2011

    • Author(s)
      Ito, K., 他
    • Organizer
      The 16^<th> Annual Meeting of the RNA Society
    • Place of Presentation
      Kyoto, Japan
    • Related Report
      2011 Annual Research Report
  • [Presentation] Introduction of a Lepidoptera-specific sequence within the GTPase-associated centerof 28S rRNA into Escherichia coli 23S rRNA : Effects of the mutations2011

    • Author(s)
      Maruyama, R., 他
    • Organizer
      The 16^<th> Annual Meeting of the RNA Society
    • Place of Presentation
      Kyoto, Japan
    • Related Report
      2011 Annual Research Report
  • [Presentation] Omnipotent role of archaeal elongation factor 1 alpha in translation elongation, and termination. and quality control of protein synthesis2011

    • Author(s)
      Saito, K., 他
    • Organizer
      The 16^<th> Annual Meeting of the RNA Society
    • Place of Presentation
      Kyoto, Japan
    • Related Report
      2011 Annual Research Report
  • [Presentation] 真核リボソームstalkに存在する2対のヘテロ二量体の翻訳伸長反応における機能の非等価性2011

    • Author(s)
      馬場健太朗, 他
    • Organizer
      第34回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜
    • Related Report
      2011 Annual Research Report
  • [Presentation] リボトキシンによるrRNA機能部位の脱プリン作用にはリボソームstalkタンパク質のC末端部位が関与する2011

    • Author(s)
      遊佐和之, 他
    • Organizer
      第34回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜
    • Related Report
      2011 Annual Research Report
  • [Presentation] 高度好熱菌T.thermophilusペプチジルtRNA加水分解酵素のX線結晶構造解析2011

    • Author(s)
      松本愛弥, 他
    • Organizer
      第34回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜
    • Related Report
      2011 Annual Research Report
  • [Presentation] 立体構造に基づくペプチジルtRNA分解酵素の酵素学的機能解析2011

    • Author(s)
      村上僚, 他
    • Organizer
      第34回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜
    • Related Report
      2011 Annual Research Report
  • [Presentation] 真核型リボソームのストークアンカータンパク質POを構成する3ドメインの機能解析2010

    • Author(s)
      望月正弘
    • Organizer
      第33回日本分子生物学会年会・第83回日本生化学会大会合同大会
    • Place of Presentation
      神戸ポートアイランド
    • Year and Date
      2010-12-09
    • Related Report
      2010 Annual Research Report
  • [Presentation] 大腸菌リボソームタンパク質L11がもたらすrRNA一タンパク質問相互作用への影響2010

    • Author(s)
      坂井貴昭, 他
    • Organizer
      第33回日本分子生物学会年会・第83回日本生化学会大会合同大会
    • Place of Presentation
      神戸ポートアイランド
    • Year and Date
      2010-12-08
    • Related Report
      2010 Annual Research Report
  • [Presentation] 翻訳伸長・終結過程の遺伝暗号解読における古細菌EF1αの普遍的機能の発見2010

    • Author(s)
      斎藤和紀, 他
    • Organizer
      第33回日本分子生物学会年会・第83回日本生化学会大会合同大会
    • Place of Presentation
      神戸ポートアイランド
    • Year and Date
      2010-12-08
    • Related Report
      2010 Annual Research Report
  • [Presentation] リボソームの翻訳因子作用中心に位置する動的タンパク質複合体2010

    • Author(s)
      内海利男
    • Organizer
      第10回日本蛋白質科学会(ノーベル賞特別シンポジウム)
    • Place of Presentation
      札幌コンベンションセンター・札幌<招待>
    • Year and Date
      2010-06-18
    • Related Report
      2011 Final Research Report
  • [Presentation] リボソームの翻訳因子作用中心に位置する動的タンパク質複合体2010

    • Author(s)
      内海利男
    • Organizer
      第10回日本蛋白質科学会年会, ノーベル賞特別シンポジウム
    • Place of Presentation
      札幌コンベンションセンター
    • Year and Date
      2010-06-18
    • Related Report
      2010 Annual Research Report
  • [Presentation] 部位特異的アミノ酸置換による動物リボソームストーク複合体の機能・構造解析:翻訳因子リクルート機構の分子基盤2010

    • Author(s)
      馬場健太朗, 他
    • Organizer
      平成22年度日本生化学会関東支部例会/第51回新潟生化学懇話会
    • Place of Presentation
      長岡技術科学大学
    • Year and Date
      2010-05-29
    • Related Report
      2010 Annual Research Report
  • [Presentation] The stalk protein complex at the ribosomal GTPase-associated center2010

    • Author(s)
      Uchiumi, T.
    • Organizer
      Current Issues of Ribosomal Structur andFunction
    • Place of Presentation
      Berlin Germany<招待>
    • Year and Date
      2010-04-09
    • Related Report
      2011 Final Research Report
  • [Presentation] The stalk protein complex at the ribosomal GTPase-associated center2010

    • Author(s)
      Uchiumi, T.
    • Organizer
      Current Issues of Ribosomal Structur and Function
    • Place of Presentation
      Berlin, Germany
    • Year and Date
      2010-04-09
    • Related Report
      2010 Annual Research Report
  • [Presentation] 真核型リボソームのストークアンカータンパク質P0を構成する3ドメインの機能解析2010

    • Author(s)
      望月正弘、北名真澄、伊東孝祐、内海利男
    • Organizer
      第33回日本分子生物学会・第83回日本生化学会合同大会
    • Place of Presentation
      神戸ポートアイランド・神戸
    • Related Report
      2011 Final Research Report
  • [Presentation] 遺伝子組換えカイコeEF-2は何故トランスロケーション不活性型か?2010

    • Author(s)
      澤田剛, 他
    • Organizer
      第12回日本RNA学会年会
    • Place of Presentation
      一橋記念講堂
    • Related Report
      2010 Annual Research Report
  • [Presentation] 翻訳伸長因子eEF-1αのリボソーム認識領域の解析2010

    • Author(s)
      久津見知, 他
    • Organizer
      第12回日本RNA学会年会
    • Place of Presentation
      一橋記念講堂
    • Related Report
      2010 Annual Research Report
  • [Presentation] 動物リボソームストークタンパク質複合体PO(P1-P2)2に5コピー存在する共通C末端ドメインの機能解析2010

    • Author(s)
      馬場健太朗, 他
    • Organizer
      第12回日本RNA学会年会
    • Place of Presentation
      一橋記念講堂
    • Related Report
      2010 Annual Research Report
  • [Presentation] リボソーム変異型大腸菌株の真核生物タンパク質発現系への利用2010

    • Author(s)
      伊東孝祐, 他
    • Organizer
      第5回無細胞生命科学研究会年会
    • Place of Presentation
      岡山大学
    • Related Report
      2010 Annual Research Report
  • [Presentation] 真核生物・古細菌リボソームタンパク質P0に存在する特徴的なドメインの役割2009

    • Author(s)
      望月正弘、長沼孝雄、内海利男
    • Organizer
      第32回日本分子生物学会
    • Place of Presentation
      パシフィコ横浜・横浜
    • Related Report
      2011 Final Research Report
  • [Presentation] リボソームGTPaseセンターを構成するストークと翻訳因子の相互作用解析2009

    • Author(s)
      野村直子、長沼孝雄、姚閔、内海利男、田中勲
    • Organizer
      第32回日本分子生物学会
    • Place of Presentation
      パシフィコ横浜・横浜
    • Related Report
      2011 Final Research Report
  • [Presentation] リボソーム16S RNA・helix 18のG505-C507、G524-C526間塩基対合の生化学的検証:EF-G依存GTPase活性への関与2009

    • Author(s)
      渡辺裕樹、三好智博、内海利男
    • Organizer
      第11回日本RNA学会
    • Place of Presentation
      朱鷺メッセ・新潟
    • Related Report
      2011 Final Research Report
  • [Presentation] 真核生物・古細菌リボソームタンパク質P0に存在する特徴的なドメインの役割2009

    • Author(s)
      望月正弘, 他
    • Organizer
      第32回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜
    • Related Report
      2009 Annual Research Report
  • [Presentation] 古細菌タンパク質の結晶構造データに基づく動物リボソームストーク複合体の部位特異的変異導入と分子間相互作用の解析2009

    • Author(s)
      馬場健太郎, 他
    • Organizer
      第32回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜
    • Related Report
      2009 Annual Research Report
  • [Presentation] リボソームGTPaseセンターを構成するストークと翻訳因子の相互作用解析2009

    • Author(s)
      野村直子, 他
    • Organizer
      第32回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜
    • Related Report
      2009 Annual Research Report
  • [Presentation] Pth(Peptidyl-tRNA hydrolase)-tRNAミニヘリックス複合体のX線結晶構造解析2009

    • Author(s)
      伊東孝祐, 他
    • Organizer
      第32回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜
    • Related Report
      2009 Annual Research Report
  • [Presentation] リボソーム16S RNA・helix 18のG505-C507、G524-C526間塩基対合の生化学的検証:EF-G依存GTPase活性への関与2009

    • Author(s)
      渡辺裕樹, 他
    • Organizer
      第11回日本RNA学会年会
    • Place of Presentation
      新潟市朱鷺メッセ
    • Related Report
      2009 Annual Research Report
  • [Presentation] リボソームGTPaseセンターにおけるストーク複合体の機能解析2009

    • Author(s)
      野村直子, 他
    • Organizer
      第11回日本RNA学会年会
    • Place of Presentation
      新潟市朱鷺メッセ
    • Related Report
      2009 Annual Research Report
  • [Book] ハーパー・生化学2011

    • Author(s)
      飯塚哲太郎、伊藤健治、内海利男、大井浩明他、岡本研、小澤敬也、上代淑人他, 19名
    • Total Pages
      812
    • Publisher
      丸善(株)
    • Related Report
      2011 Final Research Report
  • [Remarks] ・報道関連情報(1)新潟日報(朝刊) 2012年3月8日に掲載(2)新潟大学ホームページに掲載

    • URL

      http://www.niigata-u.ac.jp/top/pickup/240229.html

    • Related Report
      2011 Final Research Report
  • [Remarks] ホームページ情報(1)研究室

    • URL

      http://www.sc.niigata-u.ac.jp/biologyindex/uchiumi-ito/index.html

    • Related Report
      2011 Final Research Report
  • [Remarks] (2)所属学科(新潟大学理学部生物学科)

    • URL

      http://www.sc.niigata-u.ac.jp/biologyindex/biologyindex.html

    • Related Report
      2011 Final Research Report
  • [Remarks]

    • URL

      http://www.sc.niigata-u.ac.jp/biologyindex/Uchiumi-Ito/research.html

    • Related Report
      2011 Annual Research Report
  • [Remarks]

    • URL

      http://www.niigata-u.ac.jp/top/pickup/240229.html

    • Related Report
      2011 Annual Research Report
  • [Patent(Industrial Property Rights)] 大腸菌を用いたタンパク質の合成方法2011

    • Inventor(s)
      内海利男、朝妻悟、水口伊玖磨、山本紘、三ッ井敏明
    • Industrial Property Rights Holder
      国立大学法人新潟大学
    • Acquisition Date
      2011-04-28
    • Related Report
      2011 Final Research Report

URL: 

Published: 2009-04-01   Modified: 2016-04-21  

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