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The physiological function of the quantitative traits loci for the traits associated with the strong culm to develop the rice cultivars with high grain yield and biomass production.

Research Project

Project/Area Number 21380013
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Crop science/Weed science
Research InstitutionTokyo University of Agriculture and Technology

Principal Investigator

OOKAWA Taiichiro  東京農工大学, 大学院・農学研究院, 准教授 (80213643)

Co-Investigator(Kenkyū-buntansha) HIRASAWA Tadashi  東京農工大学, 大学院・農学研究院, 教授 (30015119)
YOKOYAMA Tadashi  東京農工大学, 大学院・農学研究院, 教授 (70313286)
Project Period (FY) 2009 – 2011
Project Status Completed (Fiscal Year 2011)
Budget Amount *help
¥18,200,000 (Direct Cost: ¥14,000,000、Indirect Cost: ¥4,200,000)
Fiscal Year 2011: ¥3,380,000 (Direct Cost: ¥2,600,000、Indirect Cost: ¥780,000)
Fiscal Year 2010: ¥3,640,000 (Direct Cost: ¥2,800,000、Indirect Cost: ¥840,000)
Fiscal Year 2009: ¥11,180,000 (Direct Cost: ¥8,600,000、Indirect Cost: ¥2,580,000)
Keywordsイネ / 強稈性 / バイオマス / 遺伝子座 / 水稲 / 高バイオマス / 多収 / NIL / マッピング / コシヒカリ / 準同質遺伝子系統 / 倒伏抵抗性 / 太稈 / 強稈質 / リグニン / 細胞分裂
Research Abstract

Lodging resistance is one of the most important agronomical traits for the rice cultivars with high grain yield and biomass production. To locate the chromosome regions controlling the lodging resistance in rice, we conducted to estimate and characterize the quantitative traits loci(QTLs) responsible for culm mechanical strength using QTL analyses, using a set of backcross inbred lines(BILs) and the chromosome segment substitution lines(SLs) developed from a cross between Koshihikari, and a high lodging resistant cultivars. We identified the effective quantitative trait loci(QTLs) for culm strength, which were designated STRONG CULM2(SCM2) and STRONG CULM3(SCM3). Positional cloning of the gene revealed that SCM2 was identical to APO1, a gene previously reported to control panicle structure. A near-isogenic line carrying SCM2 showed enhanced culm strength and increased spikelet number due to the pleiotropic effects of the gene. Although SCM2 is a gain-of-function mutant of APO1, it does not have the negative effects reported for APO1 over-expression mutants, such as decreased panicle number and abnormal spikelet morphology. The identification of lodging resistance genes by QTL analysis combined with positional cloning is a useful approach for improving lodging resistance and overall productivity in rice.

Report

(4 results)
  • 2011 Annual Research Report   Final Research Report ( PDF )
  • 2010 Annual Research Report
  • 2009 Annual Research Report
  • Research Products

    (32 results)

All 2012 2011 2010 2009 Other

All Journal Article (11 results) (of which Peer Reviewed: 11 results) Presentation (20 results) Remarks (1 results)

  • [Journal Article] Identification and characterization of genomic regions on chromosomes 4 and 8 that control the rate of photosynthesis in rice leaves2011

    • Author(s)
      Adachi, S., Y. Tsuyu, N. Nito, K. Murata, T. Yamamoto, T. Ebitani, T. Ookawa and T. Hirasawa
    • Journal Title

      Journal of Experimental Botany

      Volume: 61 Issue: 4 Pages: 1-12

    • DOI

      10.1093/jxb/erp387

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Identification of Chromosomal Regions Controlling the Leaf Photosynthetic Rate in Rice by Using a Progeny from Japonica and High-yielding Indica Varieties2011

    • Author(s)
      Adachi, S., N. Nito, M. Kondo, T. Yamamoto, Y. Arai-Sanoh, T. Ando, T. Ookawa, M. Yano and T. Hirasawa
    • Journal Title

      Plant Production Science

      Volume: 14 Issue: 2 Pages: 118-127

    • DOI

      10.1626/pps.14.118

    • NAID

      130004462224

    • ISSN
      1343-943X, 1349-1008
    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] New approach for rice improvement using a pleiotropic QTL gene for lodging resistance and yield2010

    • Author(s)
      Ookawa, T., T. Hobo, M. Yano, K. Murata, T. Ando, H. Miura, K. Asano, Y. Ochiai, M. Ikeda, R. Nishitani, T. Ebitani, H. Ozaki, E. R. Angeles, T. Hirasawa and M. Matusoka
    • Journal Title

      Nature Communications

      Volume: 1,(132) Issue: 1 Pages: 1-11

    • DOI

      10.1038/ncomms1132

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Characterization of a rice variety with high hydraulic conductance and identification of the chromosome region responsible using chromosome segment substitution lines2010

    • Author(s)
      Adachi, S., Y. Tsuru, M. Kondo, T. Yamamoto, Y. Arai-Sanoh, T. Ando, T. Ookawa, M. Yano and T. Hirasawa
    • Journal Title

      Annals of Botany

      Volume: 106,(5) Issue: 5 Pages: 803-811

    • DOI

      10.1093/aob/mcq175

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Biomass Production and Lodging Resistance in 'Leaf Star', a New Long-Culm Rice Forage Cultivar2010

    • Author(s)
      Ookawa, T., K. Yasuda, M. Seto, K. Sunaga, H. Kato, M. Sakai, T. Motobayashi, S. Tojo and T. Hirasawa
    • Journal Title

      Plant Production Science

      Volume: 13 Issue: 1 Pages: 58-66

    • DOI

      10.1626/pps.13.58

    • NAID

      130004462209

    • ISSN
      1343-943X, 1349-1008
    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Varietal Differences in Photosynthetic Rates in Rice Plants, with Special Reference to the Nitrogen Content of Leaves2010

    • Author(s)
      Hirasawa, T., S. Ozawa, R. D. Taylaran and T. Ookawa
    • Journal Title

      Plant Production Science

      Volume: 13 Issue: 1 Pages: 53-57

    • DOI

      10.1626/pps.13.53

    • NAID

      130004462208

    • ISSN
      1343-943X, 1349-1008
    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Quick Estimation of Varietal Differences in Light Extinction Coefficient of the Canopy through the Inclination Angle of Leaf Blade in Rice2010

    • Author(s)
      早田一也・大川泰一郎・本林隆・平沢正
    • Journal Title

      Japanese Journal of Crop Science

      Volume: 79 Issue: 2 Pages: 174-183

    • DOI

      10.1626/jcs.79.174

    • NAID

      130004829685

    • ISSN
      0011-1848, 1349-0990
    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] New approach for rice improvement using a pleiotropic QTL gene for lodsins resistance and yield2010

    • Author(s)
      Ookawa, T., et al.
    • Journal Title

      Nature Communications

      Volume: 1 Pages: 1-11

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Biomass production and lodging resistance in'Leaf Star', a new long-culm rice forage cultivar2010

    • Author(s)
      Ookawa, T., et al.
    • Journal Title

      Plant Production Science 13

      Pages: 56-64

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Performance of a High-Yielding Modern Rice Cultivar Takanari and Several Old and New Cultivars Grown with and without Chemical Fertilizer in a Submerged Paddy Field2009

    • Author(s)
      Taylaran, R. D., S. Ozawa, N. Miyamoto, T. Ookawa, T. Motobayashi and T. Hirasawa
    • Journal Title

      Plant Production Science

      Volume: 12 Issue: 3 Pages: 365-380

    • DOI

      10.1626/pps.12.365

    • NAID

      130004462181

    • ISSN
      1343-943X, 1349-1008
    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Characterization of Aroma and Agronomic Traits in Afghan Native Rice Cultivars2009

    • Author(s)
      Sarhadi, W. A., T. Ookawa, T. Yoshihashi, A. K. Madadi, W. Yosofzai, Y. Oikawa and Y. Hirata
    • Journal Title

      Plant Production Science

      Volume: 12 Issue: 1 Pages: 63-69

    • DOI

      10.1626/pps.12.63

    • NAID

      130004462147

    • ISSN
      1343-943X, 1349-1008
    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Presentation] ゴールドハル水稲品種リーフスターとその交雑後代系統の強稈性をもたらす要因2012

    • Author(s)
      杉山知里
    • Organizer
      日本作物学会
    • Place of Presentation
      東京農工大学農学部
    • Year and Date
      2012-03-30
    • Related Report
      2011 Annual Research Report
  • [Presentation] Properties of superior lodging resistance in a new gh line derived from across between rice cultivars, 'Leaf Star' and 'Takanari' developed for forage use2011

    • Author(s)
      Sugiyama, C.
    • Organizer
      The 7th Asian Crop Science Conference
    • Place of Presentation
      Bogor, Indonesia
    • Year and Date
      2011-09-30
    • Related Report
      2011 Annual Research Report
  • [Presentation] 水稲における倒伏抵抗性に関与する強稈性に関わる量的形質遺伝子座のマッピング-コシヒカリと中国117号の第2, 3染色体組換固定系統を用いて-2011

    • Author(s)
      大川泰一郎・中村彬良・尾崎秀宣・蛯谷武志・武士田義人・落合佑介・平沢正
    • Organizer
      日本作物学会第232回講演会
    • Year and Date
      2011-09-02
    • Related Report
      2011 Final Research Report
  • [Presentation] 水稲における倒伏抵抗性に関与する太稈性の遺伝子座の解析-コシヒカリと中国117号の第2,3染色体組換固定系統を用いて-2011

    • Author(s)
      大川泰一郎
    • Organizer
      日本作物学会
    • Place of Presentation
      山口大学農学部
    • Year and Date
      2011-09-01
    • Related Report
      2011 Annual Research Report
  • [Presentation] Properties of superior lodging resistance in a new gh line derived from a cross between rice cultivars,' Leaf Star' and' Takanari' developed for forage use2011

    • Author(s)
      Sugiyama, T., H. Kato, T. Hirasawa and T. Ookawa
    • Organizer
      The 7th Asian Crop Science Conference
    • Place of Presentation
      Bogor, Indonesia
    • Related Report
      2011 Final Research Report
  • [Presentation] Characteristics of biomass production and photosynthesis in progeny lines of a cross between rice cultivars' Akenohoshi' and' Takanari'2011

    • Author(s)
      Goto, M., K. Hasebe, T. Yamamoto, T. Hirasawa and T. Ookawa
    • Organizer
      The 7th Asian Crop Science Conference
    • Place of Presentation
      Bogor, Indonesia
    • Related Report
      2011 Final Research Report
  • [Presentation] 水稲における倒伏抵抗性に関与する太桿性の遺伝子座の解析2010

    • Author(s)
      中村彬良, ら
    • Organizer
      日本作物学会関東支部会
    • Place of Presentation
      日本大学生物資源科学部
    • Year and Date
      2010-12-03
    • Related Report
      2010 Annual Research Report
  • [Presentation] 水稲品種ハバタキの染色体断片をコシヒカリの第11染色体に置換した系統の窒素蓄積2010

    • Author(s)
      平沢正・村田和優・蛯谷武志・大川泰一郎・平沢正
    • Organizer
      日本作物学会第230回講演会
    • Year and Date
      2010-09-04
    • Related Report
      2011 Final Research Report
  • [Presentation] 水稲品種リーフスターの低リグニン性に関わる生理的,遺伝的要因の解析2010

    • Author(s)
      井上和也・酒井幸・平沢正・大川泰一郎
    • Organizer
      日本作物学会第230回講演会
    • Year and Date
      2010-09-04
    • Related Report
      2011 Final Research Report
  • [Presentation] 水稲多収性品種アケノホシ/タカナリ交雑後代系統における光合成および受光態勢の特性2010

    • Author(s)
      後藤舞・長谷部弘毅・山本敏央・平沢正・大川泰一郎
    • Organizer
      日本作物学会第229回講演会
    • Year and Date
      2010-03-30
    • Related Report
      2011 Final Research Report
  • [Presentation] 水稲の倒伏抵抗性に関わる稈の太さの遺伝子座の解析-コシヒカリと中国117号の第2, 3染色体のQTL候補領域の分離集団を用いて-2010

    • Author(s)
      武士田義人・尾崎秀宣・落合祐介・蛯谷武志・平沢正・大川泰一郎
    • Organizer
      日本作物学会第229回講演会
    • Year and Date
      2010-03-30
    • Related Report
      2011 Final Research Report
  • [Presentation] 水稲における倒伏抵抗性に関与する太稈形質の遺伝子座の解析2010

    • Author(s)
      武士田義人, ら
    • Organizer
      日本作物学会
    • Place of Presentation
      宇都宮大学農学部
    • Year and Date
      2010-03-30
    • Related Report
      2009 Annual Research Report
  • [Presentation] 水稲における倒伏抵抗性に関与する太稈形質の遺伝子座の解析-コシヒカリと中国117号の第3染色体組換固定系統群を用いて-2009

    • Author(s)
      落合祐介・蛯谷武志・平沢正・大川泰一郎
    • Organizer
      日本作物学会第228回講演会
    • Year and Date
      2009-09-30
    • Related Report
      2011 Final Research Report
  • [Presentation] コシヒカリを遺伝背景とし太稈化した準同質遺伝子系統の特性評価2009

    • Author(s)
      尾崎秀宣・大川泰一郎・村田和優・宝田研・蛯谷武志
    • Organizer
      日本作物学会第228回講演会
    • Year and Date
      2009-09-30
    • Related Report
      2011 Final Research Report
  • [Presentation] 水稲の登熟期における葉の緑色程度,根から地上部への窒素輸送速度および根の水伝導度のQTL解析-コシヒカリ/アケノホシF4集団を用いて2009

    • Author(s)
      鈴木健司・山本敏央・大川泰一郎・岡崎正規・矢野昌裕・平沢正
    • Organizer
      日本作物学会第228回講演会
    • Year and Date
      2009-09-29
    • Related Report
      2011 Final Research Report
  • [Presentation] Comparisons of the rate of photosynthesis between rice cultivars Takanari and Koshihikari with reference to growth stage and leaf nitrogen content2009

    • Author(s)
      Taylaran, R. D., T. Ookawa, H. Usuda and T. Hirasawa
    • Organizer
      日本作物学会第228回講演会
    • Year and Date
      2009-09-29
    • Related Report
      2011 Final Research Report
  • [Presentation] Estimation and characterization of a quantitative trait locus on chromosome 8 for leaf photosynthesis in paddy rice2009

    • Author(s)
      Tsuru, Y., S. Asanuma, K. Murata, T. Ebitani, T. Ookawa and T. Hirasawa
    • Organizer
      Plant Biology 2009, American Society of Plant Biologists and the Physiological Society of America
    • Place of Presentation
      Hawaii
    • Year and Date
      2009-07-22
    • Related Report
      2011 Final Research Report
  • [Presentation] Estimation and characterization of a quantitative trait locus on chromosome 4 for leaf photosynthesis in paddy rice2009

    • Author(s)
      Asanuma, S., Y. Tsuru, T. Sueyoshi, K. Murata, T. Yamamoto, T. Ebitani, T. Ookawa and H. Hirasawa
    • Organizer
      Plant Biology 2009, American Society of Plant Biologists and the Physiological Society of America
    • Place of Presentation
      Hawaii
    • Year and Date
      2009-07-22
    • Related Report
      2011 Final Research Report
  • [Presentation] Properties of culm strength, lignin content and cinnamyl-alcohol dehydrogenase in the rice cultivar, Leaf Star with high lodging resistance-Comparison with parents and gold hull and internode mutants2009

    • Author(s)
      Ookawa, T., K. Inoue, K. Sunaga, S. Tanaka, S. Tojo and T. Hirasawa
    • Organizer
      Plant Biology 2009, American Society of Plant Biologists and the Physiological Society of America
    • Place of Presentation
      Hawaii
    • Year and Date
      2009-07-22
    • Related Report
      2011 Final Research Report
  • [Presentation] Varietal differences in rates of root growth and leaf photosynthesis, hydraulic conductivity and expression of aquaporins in barley seedlings under salt stress conditions2009

    • Author(s)
      Tamaki, W., M. Katsuhara, M. Yamaguchi, T. Ookawa, K. Takeda, T. Hirasawa
    • Organizer
      Plant Biology 2009, American Society of Plant Biologists and the Physiological Society of America
    • Place of Presentation
      Hawaii
    • Year and Date
      2009-07-22
    • Related Report
      2011 Final Research Report
  • [Remarks]

    • URL

      http://www.tuat.ac.jp/~crop/

    • Related Report
      2011 Final Research Report

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Published: 2009-04-01   Modified: 2016-04-21  

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