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Ecological study on marine luminous bacteria possessing proteorhodopsin

Research Project

Project/Area Number 21380123
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field General fisheries
Research InstitutionThe University of Tokyo

Principal Investigator

KOGURE Kazuhiro  東京大学, 大気海洋研究所, 教授 (10161895)

Co-Investigator(Kenkyū-buntansha) HAMASAKI Koji  東京大学, 大気海洋研究所, 准教授 (80277871)
YOSHIZAWA Susumu  東京大学, 大気海洋研究所, 特任研究員 (00553108)
Research Collaborator PARK Sanghwa  東京大学, 大気海洋研究所, 農学特定研究員
Project Period (FY) 2009 – 2011
Project Status Completed (Fiscal Year 2011)
Budget Amount *help
¥17,810,000 (Direct Cost: ¥13,700,000、Indirect Cost: ¥4,110,000)
Fiscal Year 2011: ¥4,030,000 (Direct Cost: ¥3,100,000、Indirect Cost: ¥930,000)
Fiscal Year 2010: ¥4,160,000 (Direct Cost: ¥3,200,000、Indirect Cost: ¥960,000)
Fiscal Year 2009: ¥9,620,000 (Direct Cost: ¥7,400,000、Indirect Cost: ¥2,220,000)
Keywordsプロテオロドプシン / 海洋細菌 / 光エネルギー / プロトンポンプ活性 / Flavobacteria / 遺伝子解析 / 遺伝子伝搬 / 16S rDNA / Bacteroidetes / エルギー代謝 / 海洋生態系 / 系統解析 / エネルギー代謝
Research Abstract

Proteorhodopsin (PR) is a membrane protein that absorbs light energy and functions as proton pump. The proton gradient thus established enables the cells to synthesize ATP, thus serves as efficient energy synthesis component. This was first reported in 2000. Since then there have been estimated that nearly half of prokaryotes present in the upper water column in the ocean may possess PR. However, so far only about 10 isolates had been reported to possess PR, that makes any further physiological investigations difficult. Our group succeeded to isolate more than 60 strains and directly measure the activity of proton pump under light. In addition, with further assumptions we succeeded to estimate the contribution of PR to light energy absorption to the ocean for the first time. The research on PR is now expanding after our investigation using isolates.

Report

(4 results)
  • 2011 Annual Research Report   Final Research Report ( PDF )
  • 2010 Annual Research Report
  • 2009 Annual Research Report
  • Research Products

    (29 results)

All 2012 2011 2010

All Journal Article (18 results) (of which Peer Reviewed: 18 results) Presentation (11 results)

  • [Journal Article] Diversity and functional analysis of proteorhodopsin in marine Flavobacteria2012

    • Author(s)
      Yoshizawa Susumu, Akira Kawanabe, Hiroyasu Ito, Hideki Kandori and Kazuhiro Kogure
    • Journal Title

      Environmental Microbiology(doi:10.1111/j.1462-2920.2012.02702.x)

      Volume: 14(5) Pages: 1240-1248

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Anomalous pH effect of blue proteorhodopsin2012

    • Author(s)
      Yamada, Keisuke, Akira Kawanabe, Susumu Yoshizawa, Kentaro Inoue, Kazuhiro Kogure, Hideki Kandori
    • Journal Title

      The Journal of Physical Chemistry Letters(Manuscript ID: jz-2012-000257.R1)

      Volume: 3(7) Pages: 800-804

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Aureitalea marina gen. nov., sp. nov., a member of the family Flavobacteriaceae, isolated from seawater2012

    • Author(s)
      Park, Sanghwa, Susumu Yoshizawa, Kentaro Inomata, Kazuhiro Kogure and Akira Yokota
    • Journal Title

      International Journal of Systematic and Evolutionary Microbiology

      Volume: 62 Pages: 912-916

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Vibrio jasicida sp. nov., a member of the Harveyi clade, from marine animals (packhorse lobster, abalone, and Atlantic salmon)2012

    • Author(s)
      Yoshizawa, Susumu, Yasuhiro Tsuruya, Youhei Fukui, Tomoo Sawabe, Akira Yokota, Kazuhiro Kogure, Melissa Higgins, Jeremy Carson, Fabiano L. Thompson
    • Journal Title

      International Journal of Systematic and Evolutionary Microbiology

      Volume: 62 Pages: 1864-1870

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Vibrio azureus emits blue-shifted light via an accessory blue fluorescent protein2012

    • Author(s)
      Yoshizawa, Susumu, Hajime Karatani, Minoru Wada, Kazuhiro Kogure
    • Journal Title

      FEMS Microbiology Letters

      Volume: 329(1) Pages: 61-68

    • Related Report
      2011 Annual Research Report 2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Halioglobus japonicus gen. nov., sp. nov., and Halioglobus pacificus sp. nov., within the class Gammaproteobacteria, isolated from seawater2012

    • Author(s)
      Park, Sanghwa, Susumu Yoshizawa, Kentaro Inomata, Kazuhiro Kogure and Akira Yokota
    • Journal Title

      International Journal of Systematics and Evolutionary Microbiology(Doi: 10.1099/ijs.0.031443-0)

      Volume: (in press)

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Diversity and functional analysis of proteorhodopsin in marine Flavobacteria2012

    • Author(s)
      Yoshizawa, S., Kawanabe, A., Ito, H., Kandori, H., Kogure, K.
    • Journal Title

      Environ. Microbiol.

      Volume: 14 Issue: 5 Pages: 1280-1284

    • DOI

      10.1111/j.1462-2920.2012.02702.x

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Anomalous pH effect of blue proteorhodopsin2012

    • Author(s)
      Yamada, Keisuke, Akira Kawanabe, Susumu Yoshizawa, Kentaro Inoue, Kazuhiro Kogure, Hideki Kandori
    • Journal Title

      The Journal of Physical Chemistry Letters

      Volume: 3 Pages: 800-804

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Aureitalea marina gen.nov., sp.nov., a member of the family Flavobacteriaceae, isolated from seawater2012

    • Author(s)
      Sanghwa Park, Susumu Yoshizawa, Kentaro Inomata, Kazuhiro Kogure, Akira Yokota
    • Journal Title

      International Journal of Systematic and Evolutionary Microbiology

      Volume: 62 Issue: Pt_4 Pages: 912-916

    • DOI

      10.1099/ijs.0.031450-0

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Rubricoccus marinus gen. nov., sp. nov., of the family ‘Rhodothermaceae’, isolated from seawater2011

    • Author(s)
      Park, Sanghwa, Susumu Yoshizawa, Kazuhiro Kogure, Akira Yokota
    • Journal Title

      International Journal of Systematic and Evolutionary Microbiology

      Volume: 61 Pages: 2069-2072

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Evidence for particle-induced horizontal gene transfer and serial transduction between bacteria2011

    • Author(s)
      Chiura, Hiroshi X., Kazuhiro Kogure, Sylvia Hagemann, Adolf Ellinger and Branko Velimirov
    • Journal Title

      FEMS Microbiology Ecology

      Volume: 76 Pages: 576-591

    • Related Report
      2011 Annual Research Report 2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Oceanicoccus sagamiensis gen. nov., sp. nov., a gamma-proteobacterium isolated from sea water of Sagami Bay in Japan2011

    • Author(s)
      Sanghwa Park, Susumu Yoshizawa, Kazuhiro Kogure and Akira Yokota
    • Journal Title

      The Journal of Microbiology

      Volume: 49(2) Pages: 233-237

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Rubricoccus marinus gen.nov., sp.nov., of the family 'Rhod othermaceae', isolated from seawater2011

    • Author(s)
      Sanghwa Park, Susumu Yoshizawa, Kazuhiro Kogure, Akira Yokota
    • Journal Title

      International Journal of Systematic and Evolutionary Microbiology

      Volume: 61 Issue: 9 Pages: 2069-2072

    • DOI

      10.1099/ijs.0.026294-0

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Oceanicoccus sagamiensis gen.nov., sp.nov., a gamma-prote obacterium isolated from sea water of Sagami Bay in Japan2011

    • Author(s)
      Sanghwa Park, Susumu Yoshizawa, Kazuhiro Kogure, Akira Yokota
    • Journal Title

      The Journal of Microbiology

      Volume: 49 Issue: 2 Pages: 233-237

    • DOI

      10.1007/s12275-011-0368-y

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Oceanicoccus sagamiensis gen.nov., sp.nov., a gamma-prote obacterium isolated from sea water of Sagami Bay in Japan.2011

    • Author(s)
      Sanghwa Park, Susumu Yoshizawa, Kazuhiro Kogure, Akira Yokot a.
    • Journal Title

      The Journal of Microbiology

      Volume: 掲載確定(印刷中掲載確定)

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Evidence for particle-induced horizontal gene transfer and serial transduction between bacteria.2011

    • Author(s)
      Hiroshi X.Chiura, Kazuhiro Kogure, Sylvia Hagemann, Adolf Ellinner, Branko Velimirov.
    • Journal Title

      FEMS Microbiology Ecology

      Volume: 掲載確定(印刷中掲載確定)

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Vibrio sagamiensis sp. nov., luminous marine bacteria isolated from sea water2010

    • Author(s)
      Yoshizawa Susumu, Minoru Wada, Akira Yokota, and Kazuhiro Kogure
    • Journal Title

      The Journal of General and Applied Microbiology

      Volume: 56(6) Pages: 499-507

    • NAID

      130004449296

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Psychrosphaera saromensis gen nov., sp. nov., within the family Pseudalteromonadaceae, isolated from Lake Saroma Japan2010

    • Author(s)
      Park, Sanghwa, Susumu Yoshizawa, Koji Hamasaki, Kazuhiro Kogure, Akira Yokota
    • Journal Title

      The Journal of General and Applied Microbiology

      Volume: 56(6) Pages: 475-480

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Presentation] "Photoheterotrophy" -an overlooked new mechanism in marine environments2012

    • Author(s)
      Kogure Kazuhiro
    • Organizer
      At ASLO Presymposium
    • Place of Presentation
      Otsu, Japan
    • Year and Date
      2012-03-05
    • Related Report
      2011 Final Research Report
  • [Presentation] Exploring marine microbial unknown functions2012

    • Author(s)
      木暮一啓
    • Organizer
      ASLO Presymposium
    • Place of Presentation
      琵琶湖ホール、大津(滋賀県)(招待講演)
    • Year and Date
      2012-03-05
    • Related Report
      2011 Annual Research Report
  • [Presentation] "Photoheterotrophy"-an overlooked new mechanism in marine environments2012

    • Author(s)
      木暮一啓
    • Organizer
      ASLO Presymposium
    • Place of Presentation
      琵琶湖ホール、大津(滋賀県)(招待講演)
    • Year and Date
      2012-03-05
    • Related Report
      2011 Annual Research Report
  • [Presentation] "Photoheterotrophy" -an overlooked mechanism of marine bacteria2011

    • Author(s)
      Kogure Kazuhiro
    • Organizer
      At National Central University
    • Place of Presentation
      Chung-Li City, Taiwan
    • Year and Date
      2011-12-01
    • Related Report
      2011 Final Research Report
  • [Presentation] Proteorhodopsin-mediated phototrophy in marine Flavobacteria2011

    • Author(s)
      吉澤晋
    • Organizer
      The 3^<rd> AORI-KIOS Joint Symiposium on Marine Science
    • Place of Presentation
      東京大学大気海洋研究所(千葉県)
    • Year and Date
      2011-11-10
    • Related Report
      2011 Annual Research Report
  • [Presentation] VNCの概念の変遷と新たな展開2011

    • Author(s)
      木暮一啓
    • Organizer
      日本生化学会2011年度大会
    • Place of Presentation
      京都国際会議場, 京都
    • Year and Date
      2011-10-21
    • Related Report
      2011 Final Research Report
  • [Presentation] 海洋性フラボバクテリアのプロテオロドプシンによる光エネルギー利用2011

    • Author(s)
      吉澤晋
    • Organizer
      日本微生物生態学会
    • Place of Presentation
      京都大学(京都府)
    • Year and Date
      2011-10-09
    • Related Report
      2011 Annual Research Report
  • [Presentation] Exploring marine microbial unknown functions2011

    • Author(s)
      Kogure Kazuhiro
    • Organizer
      At Fu Jen Catholic University
    • Place of Presentation
      Taipei, Taiwan
    • Year and Date
      2011-06-21
    • Related Report
      2011 Final Research Report
  • [Presentation] Exploring marine microbial unknown functions2011

    • Author(s)
      木暮一啓
    • Organizer
      Sepcial Seminar
    • Place of Presentation
      Fu Jen Catholic University, Taipei, Taiwan(招待講演)
    • Year and Date
      2011-06-21
    • Related Report
      2011 Annual Research Report
  • [Presentation] Proteorhodopsin, a new mechanism to harvest light energy2010

    • Author(s)
      Kogure Kazuhiro
    • Organizer
      At National Institute of Oceanography, Goa
    • Place of Presentation
      India
    • Year and Date
      2010-09-16
    • Related Report
      2011 Final Research Report
  • [Presentation] Proteorhodopsin is functioning as the light-driven proton pump among marine Flavobacteria2010

    • Author(s)
      Yoshizawa, Susumu, Akira Kawanabe, Hideki Kandori, and Kazuhiro Kogure
    • Organizer
      International Society for Microbial Ecology, 13 International Symposium
    • Place of Presentation
      Seattle, USA
    • Year and Date
      2010-08-18
    • Related Report
      2011 Final Research Report

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Published: 2009-04-01   Modified: 2016-04-21  

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