• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to previous page

Natural Language Processing-Based Comprehensive Data Analysis for Interaction Between Chemicals and Drug Metabolism Network

Research Project

Project/Area Number 21390008
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Physical pharmacy
Research InstitutionKyoto University

Principal Investigator

YAMASHITA Fumiyoshi  京都大学, 大学院・薬学研究科, 准教授 (30243041)

Co-Investigator(Kenkyū-buntansha) ITO Takayuki  お茶の水女子大学, 大学院・人間文化創成科学研究科, 准教授 (80401595)
Co-Investigator(Renkei-kenkyūsha) FENG Chunlai  京都大学, 大学院・薬学研究科, 教務補佐員 (40456835)
Project Period (FY) 2009 – 2011
Project Status Completed (Fiscal Year 2011)
Budget Amount *help
¥18,460,000 (Direct Cost: ¥14,200,000、Indirect Cost: ¥4,260,000)
Fiscal Year 2011: ¥4,680,000 (Direct Cost: ¥3,600,000、Indirect Cost: ¥1,080,000)
Fiscal Year 2010: ¥4,940,000 (Direct Cost: ¥3,800,000、Indirect Cost: ¥1,140,000)
Fiscal Year 2009: ¥8,840,000 (Direct Cost: ¥6,800,000、Indirect Cost: ¥2,040,000)
Keywords薬物代謝 / 薬物間相互作用 / 自然言語処理 / テキストマイニング / 構造活性相関 / 自然言語解析 / インシリコ予測 / ネットワーク解析 / 薬物相互作用
Research Abstract

Drug metabolism is closely related to efficacy and safety of drugs, of which inhibition or induction is involved in drug-drug interaction following administration of multiple drugs. In order to predict drug-drug interactions, it is required to comprehensively understand not only interaction of chemicals with individual drug-metabolizing enzymes but that with a network system regulating expression and activity of the enzymes. In the present study, we developed a natural language processing-based text-mining technique for systematically collecting information on interaction between chemicals and a drug metabolism-related network. In addition, based on the information collected, we systematically performed structure-activity relationship analyses. These results will present a clue to drug design and discovery intended for development of safer drugs.

Report

(4 results)
  • 2011 Annual Research Report   Final Research Report ( PDF )
  • 2010 Annual Research Report
  • 2009 Annual Research Report
  • Research Products

    (20 results)

All 2012 2011 2010 2009 Other

All Journal Article (4 results) (of which Peer Reviewed: 3 results) Presentation (13 results) Book (2 results) Remarks (1 results)

  • [Journal Article] Structure-Activity Relationship Modeling for Predicting Interactions with Pregnane X Receptor by Recursive Partitioning2012

    • Author(s)
      Shuya Yoshida, Fumiyoshi Yamashita, Takayuki Itoh, Mitsuru Hashida
    • Journal Title

      Drug Metabolism and Pharmacokinetics

      Volume: 27 Issue: 5 Pages: 506-512

    • DOI

      10.2133/dmpk.DMPK-11-RG-159

    • NAID

      130004463279

    • ISSN
      1347-4367, 1880-0920
    • Related Report
      2011 Annual Research Report 2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Automated information extraction and structure-activity relationship analysys of cytochrome P450 substrates2011

    • Author(s)
      Fumiyoshi Yamashita, Chunlai Feng, Shuya Yoshida, Takayuki Itoh and Mitsuru Hashida
    • Journal Title

      Journal of Chemical Information and Modeling

      Volume: 51 Issue: 2 Pages: 378-385

    • DOI

      10.1021/ci100334z

    • Related Report
      2011 Annual Research Report 2011 Final Research Report 2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A novel multi-dimensional visualization technique for understanding the design parameters of drug formulations2009

    • Author(s)
      Fumiyoshi Yamashita, Takayuki Itoh, Shuya Yoshida, Mohammad K. Haidar and Mitsuru Hashida
    • Journal Title

      Computers & Chemical Engineering

      Volume: 34 Pages: 1306-1311

    • NAID

      120002511244

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] DDS機能設計と開発における先端解析技術 インシリコ薬物動態予測2009

    • Author(s)
      山下富義
    • Journal Title

      Pharm Tech Japan

      Volume: 25(13) Pages: 90-93

    • Related Report
      2009 Annual Research Report
  • [Presentation] In Silico Pharmacokinetics : from QSAR to PK Modeling2012

    • Author(s)
      Fumiyoshi Yamashita
    • Organizer
      1st HD Physiology International Symposium : Integrative Multi-level Systems Biology for In silico Cardiology and Pharmacokinetics
    • Place of Presentation
      東京大学(東京都)
    • Year and Date
      2012-01-21
    • Related Report
      2011 Annual Research Report
  • [Presentation] Chemoinformatic Modeling for Discriminating Pregnane X Receptor Activators2012

    • Author(s)
      Shuya Yoshida, Fumiyoshi Yamashita, Mitsuru Hashida
    • Organizer
      1st HD Physiology International Symposium : Integrative Multi-level Systems Biology for In silico Cardiology and Pharmacokinetics
    • Place of Presentation
      東京大学(東京都)
    • Related Report
      2011 Annual Research Report
  • [Presentation] In Silico Prediction of Pregnane X Receptor Activators by Classification Tree Model2011

    • Author(s)
      Fumiyoshi Yamashita, Shuya Yoshida, and Mitsuru Hashida
    • Organizer
      The 8th AFMC International Medicinal Chemistry Symposium
    • Place of Presentation
      京王プラザホテル(東京都)
    • Year and Date
      2011-12-01
    • Related Report
      2011 Final Research Report
  • [Presentation] In Silico Prediction of Pregnane X Receptor Activators by Classification Tree Model2011

    • Author(s)
      Fumiyoshi Yamashita, Shuya Yoshida, Mitsuru Hashida
    • Organizer
      The 8th AFMC International Medicinal Chemistry Symposiun
    • Place of Presentation
      京王プラザホテル(東京都)
    • Year and Date
      2011-12-01
    • Related Report
      2011 Annual Research Report
  • [Presentation] Techniques for ADME Screening2011

    • Author(s)
      Fumiyoshi Yamashita, Data Mining and Visualization
    • Organizer
      Spring International Convention of The Pharmaceutical Society of Korea
    • Place of Presentation
      Busan Exhibition and Convention Center(Busan)
    • Year and Date
      2011-04-22
    • Related Report
      2011 Final Research Report
  • [Presentation] Techniques for ADME Screening2010

    • Author(s)
      Fumiyoshi Yamashita, Data Mining and Visualization
    • Organizer
      FIP Pharmaceutical Sciences World Congress
    • Place of Presentation
      The Ernest N. Morial Convention Center(New Orleans)
    • Year and Date
      2010-11-17
    • Related Report
      2011 Final Research Report
  • [Presentation] Data mining and visualization techniques for ADME screening2010

    • Author(s)
      Fumiyoshi Yamashita
    • Organizer
      FIP Pharmaceutical Sciences 2010 World Congress in association with the AAPS Annual Meeting and Exposition
    • Place of Presentation
      Ernest N.Morial Convention Center(New Orleans, USA)(招待講演)
    • Year and Date
      2010-11-13
    • Related Report
      2010 Annual Research Report
  • [Presentation] CYP-化合物間相互作用情報のテキストマイニングと構造活性相関解析2010

    • Author(s)
      吉田秀哉, 山下富義, 橋田充
    • Organizer
      日本薬物動態学会第25回年会
    • Place of Presentation
      大宮ソニックシティ(埼玉県)
    • Year and Date
      2010-10-08
    • Related Report
      2011 Final Research Report
  • [Presentation] CYP-化合物間相互作用情報のテキストマイニングと構造活性相関解析2010

    • Author(s)
      吉田秀哉
    • Organizer
      日本薬物動態学会第25年会
    • Place of Presentation
      大宮ソニックシティ(埼玉県)
    • Year and Date
      2010-10-07
    • Related Report
      2010 Annual Research Report
  • [Presentation] Automated knowledge acquisition and structure-activity relationship analysis regarding cytochrome P450 metabolism2010

    • Author(s)
      Fumiyoshi Yamashita, Chunlai Feng, Shuya Yoshida, Mitsuru Hashida
    • Organizer
      18th European Symposium on Quantitative Structure-Activity Relationships
    • Place of Presentation
      The Rodos Palace International Convention Centre(Rhodes)
    • Year and Date
      2010-09-22
    • Related Report
      2011 Final Research Report
  • [Presentation] Automated knowledge acquisition and structure-activity relationship analysis regarding cytochrome P450 metabolism2010

    • Author(s)
      Fumiyoshi Yamashita, Chunlai Feng, Shuya Yoshida, Mitsuru Hashida
    • Organizer
      18th European Symposium on Quantitative Structure-Activity Relationships
    • Place of Presentation
      Rhodes Palace Hotel(ギリシア)
    • Year and Date
      2010-09-20
    • Related Report
      2010 Annual Research Report
  • [Presentation] 構造活性相関法に基づくin slico薬物動態予測2010

    • Author(s)
      山下富義
    • Organizer
      日本薬学会第130年会
    • Place of Presentation
      岡山コンベンションセンター(岡山県)
    • Year and Date
      2010-03-30
    • Related Report
      2009 Annual Research Report
  • [Presentation] コンピュータを利用した薬物動態評価・予測の方法論2009

    • Author(s)
      山下富義
    • Organizer
      第2回ファーマコメトリクス研究会
    • Place of Presentation
      昭和大学 上條講堂(東京都)
    • Year and Date
      2009-09-05
    • Related Report
      2009 Annual Research Report
  • [Book] In silicoによるバイオアベイラビリティの予測,薬物の消化管吸収予測研究の最前線,(杉山雄一監修)2010

    • Author(s)
      山下富義
    • Publisher
      メディカルドゥ
    • Related Report
      2011 Final Research Report
  • [Book] 薬物体内動態とDDS機能のコンピュータシミュレーション,図解で学ぶDDS(橋田充監修,高倉喜信編)2010

    • Author(s)
      山下富義
    • Publisher
      じほう
    • Related Report
      2011 Final Research Report
  • [Remarks]

    • URL

      http://dds.pharm.kyoto-u.ac.jp/Dds_Home/index.htm

    • Related Report
      2011 Final Research Report

URL: 

Published: 2009-04-01   Modified: 2016-04-21  

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi