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Research and development of drugs of prevention and treatment for complication of diabetes targeting the receptor of advanced glycation end products(RAGE)

Research Project

Project/Area Number 21390013
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Physical pharmacy
Research InstitutionOsaka University of Pharmaceutical Sciences

Principal Investigator

KOBAYASHI Yuji  大阪薬科大学, 薬学部, 教授 (20127228)

Co-Investigator(Kenkyū-buntansha) YAMADA Takashi  大阪薬科大学, 薬学部, 准教授 (20278592)
NISHIMURA Mitsuhiro  大阪薬科大学, 薬学部, 博士研究員 (40510285)
Project Period (FY) 2009 – 2011
Project Status Completed (Fiscal Year 2011)
Budget Amount *help
¥19,240,000 (Direct Cost: ¥14,800,000、Indirect Cost: ¥4,440,000)
Fiscal Year 2011: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Fiscal Year 2010: ¥3,510,000 (Direct Cost: ¥2,700,000、Indirect Cost: ¥810,000)
Fiscal Year 2009: ¥13,780,000 (Direct Cost: ¥10,600,000、Indirect Cost: ¥3,180,000)
Keywords創薬 / 糖尿病 / 最終糖化産物 / AGE / RAGE / SBDD / バーチャルスクリーニング / NMR / 合理的薬物設計 / AGE受容体 / AGE-RAGE相互作用 / PPARγ / 等温滴定型熱量計 / 水和 / 終末糖化産物 / 糖尿病合併症 / 分子間相互作用 / 超遠心分析用蛍光測定装置 / 超遠心分析 / 合理的創薬 / 糖尿病血管合併症 / リガンド / レセプター
Research Abstract

The worst three complications of diabetes ; retinopathy, nephritis and neurosis, are due to phenomena in vascular endothelial cells induced by the binding of AGE to its receptor.(AGE ; Advanced Glycation End products, the reaction products between protein and sugar in blood) The aim of this project is to develop therapeutic agents for diabetic vascular complications by rational design and chemical synthesis of candidates to inhibit this interaction with considering the structural information obtained by NMR, X-ray crystallography, conformation energy calculation and thermodynamic information by ultracentrifugation analysis and isothermal titration calorimetry and so on.

Report

(4 results)
  • 2011 Annual Research Report   Final Research Report ( PDF )
  • 2010 Annual Research Report
  • 2009 Annual Research Report
  • Research Products

    (47 results)

All 2012 2011 2010 2009 2008 Other

All Journal Article (18 results) (of which Peer Reviewed: 18 results) Presentation (29 results)

  • [Journal Article] Conformational preferences of 4-chloroproline residues2012

    • Author(s)
      Park HS, Byun BJ, Motooka D, Kawahara K, Doi M, Nakazawa T, Kobayashi Y, Kang YK
    • Journal Title

      Biopolymers

      Volume: 97 Issue: 8 Pages: 629-641

    • DOI

      10.1002/bip.22054

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Polymorphism of Collagen Triple Helix Revealed by (19)F NMR of Mode 1 Peptide [Pro-4(R)-Hydroxyprolyl-Gly](3)-[Pro-4(R)-Fluoroprolyl-Gly]-[Pro-4(R)-Hydroxyprolyl-Gly](3)2012

    • Author(s)
      Kawahara K, Nemoto N, Motooka D, Nishi Y, Doi M, Uchiyama S, Nakazawa T, Nishiuchi Y, Yoshida T, Ohkubo T, Kobayashi Y
    • Journal Title

      J Phys Chem B.

      Volume: 116 Issue: 23 Pages: 6908-6915

    • DOI

      10.1021/jp212631q

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] The triple helical structure and stability of collagen model peptide with 4(S)-hydroxyprolyl-pro-gly units2011

    • Author(s)
      Motooka D, Kawahara K, Nakamura S, Doi M, Nishi Y, Nishiuchi Y, Kee Kang Y, Nakazawa T, Uchiyama S, Yoshida T, Ohkubo T, Kobayashi Y
    • Journal Title

      Biopolymers

      Volume: 98 Issue: 2 Pages: 111-121

    • DOI

      10.1002/bip.21730

    • Related Report
      2011 Annual Research Report 2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Assembly states of the nucleosome assembly protein 1(NAP-1) revealed by sedimentation velocity and non-denaturing MS2011

    • Author(s)
      Noda M, Uchiyama S, McKay AR, Morimoto A, Misawa S, Yoshida A, Shimahara H, Takinowaki H, Nakamura S, Kobayashi Y, Matsunaga S, Ohkubo, T, Robinson CV, Fukui K
    • Journal Title

      Biochem. J

      Volume: 436 Pages: 101-112

    • URL

      http://www.biochemj.org/bj/436/0101/bj4360101.htm

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Increasing the hydrolysis constant of the reactive site upon introduction of an engineered Cys14-Cys39 bond into the ovomucoid third domain from silver pheasant2011

    • Author(s)
      Hemmi H, Kumazaki T, Kojima S, Yoshida T., Ohkubo, T, Yokosawa H, Miura K, and Kobayashi Y
    • Journal Title

      J. Peptide Science

      Volume: 8 Issue: 8 Pages: 595-600

    • DOI

      10.1002/psc.1381

    • Related Report
      2011 Annual Research Report 2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Assembly states of the nucleosome assembly protein 1 (NAP-1) revealed by sedimentation velocity and non-denaturing MS2011

    • Author(s)
      Noda M, Uchiyama S, McKay AR, Morimoto A, Misawa S, Yoshida A, Shimahara H, Takinowaki H, Nakamura S, Kobayashi Y, Matsunaga S, Ohkubo T, Robinson CV, Fukui K
    • Journal Title

      Biochem J.

      Volume: 436 Issue: 1 Pages: 101-112

    • DOI

      10.1042/bj20102063

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Structure and Reaction Mechanism of Human Nicotinamide Phosphoribosyltransferase2010

    • Author(s)
      Takahashi R, Nakamura S, Nakazawa T, Minoura K, Yoshida T, Nishi Y, Kobayashi Y, Ohkubo T
    • Journal Title

      J. Biochem

      Volume: 147 Pages: 95-107

    • NAID

      10027873352

    • URL

      http://jb.oxfordjournals.org/content/147/1/95.long

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Structural and dynamic features of the MutT protein in the recognition of nucleotides with the mutagenic 8-oxoguanine base2010

    • Author(s)
      T. Nakamura, S. Meshitsuka, S. Kitagawa, N. Abe, J. Yamada, T. Ishino, H. Nakano, T. Tsuzuki, T. Doi, S. Fujii, Y. Kobayashi, M. Sekiguchi, Y. Yamagata J
    • Journal Title

      Biol. Chem

      Volume: 285 Pages: 444-452

    • URL

      http://www.jbc.org/content/285/1/444.long

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Cloming, expression, crystallization and preliminary X-ray crystallographic analysis of a human condensin SMC2 hinge domain with short coiled coils.2010

    • Author(s)
      Y.Kobayashi, et al.
    • Journal Title

      Acta Crystallogr Sect F Struct Biol Cryst Commun.

      Volume: 66 Pages: 1067-1070

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Thermal effects of added propanol on the helix-coil transition of(Pro-Pro-Gly)10 in D2O solution : An NMR study2010

    • Author(s)
      Y.Kobayashi, et al.
    • Journal Title

      Chemical Physics Letters

      Volume: 491 Pages: 208-221

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Characterization of HIV-1 resistance to a fusion inhibitor, N36, derived from the gp41 amino-terminal heptad repeat.2010

    • Author(s)
      Y.Kobayashi, et al.
    • Journal Title

      Antiviral Res.

      Volume: 87 Pages: 179-186

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Structure and reaction mechanism of human nicotinamide phosphoribosyl-transferase.2010

    • Author(s)
      Y.Kobayashi, et al.
    • Journal Title

      J Biochem.

      Volume: 147 Pages: 95-107

    • NAID

      10027873352

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Structural and dynamic features of the MutT protein in the recognition of nucleotides with the mutagenic 8-oxoguanine base.2010

    • Author(s)
      Y.Kobayashi, et al.
    • Journal Title

      J Biol Chem.

      Volume: 285 Pages: 444-452

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Structure-activity relationship of marinostatin, a serine protease inhibitor isolated from a marine organism2010

    • Author(s)
      Y.Kobayashi, et al.
    • Journal Title

      J Pept Sci.

      Volume: 16 Pages: 329-336

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Effect of antibody affinity and antigen valence on molecular forms of immune complexes2009

    • Author(s)
      Oda M, Uchiyama S, Noda M, Nishi Y, Koga M, Mayanagi K, Robinson C. V., Fukui K, Kobayashi Y, Morikawa K, Azuma T
    • Journal Title

      Mol. Immunol

      Volume: 47 Pages: 357-364

    • URL

      http://www.sciencedirect.com/science/article/pii/S0161589009007111

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Crystal Structure of Human Ribosomal Protein L10 Core Domain Reveals Eukaryote-Specific Motifs in Addition to the Conserved Fold2008

    • Author(s)
      Nishimura M, Kaminishi T, Takemoto C, Kawazoe M, Yoshida T, Tanaka A, Sugano S, Shirouzu M, Ohkubo T, Yokoyama S, Kobayashi Y
    • Journal Title

      J Mol Biol

      Volume: 377 Pages: 421-430

    • URL

      http://www.sciencedirect.com/science/article/pii/S002228360800020X

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] The Solution Structure of Variable-type Domain of Receptor for Advanced Glycation Endproducts : Identification of the AGE-binding Site2008

    • Author(s)
      S. Matsumoto, T. Yoshida, H. Murata, S. Nakamura, Y. Yamamoto, T. Watanabe, H. Yonekura, H. Yamamoto, T. Ohkubo and Y. Kobayashi
    • Journal Title

      Biochemistry

      Volume: 47 Issue: 47 Pages: 12299-12311

    • DOI

      10.1021/bi800910v

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Polymorphism of Collagen Triple Helix Revealed by(19) F NMR of Model Peptide [Pro-4(R)-Hydroxyprolyl-Gly](3)-[Pro-4(R)-Fluoroprolyl-Gly]-[Pro-4(R)-Hydroxyprolyl-Gly](3)

    • Author(s)
      Kawahara K, Nemoto N, Motooka D, Nishi Y, Doi M, Uchiyama S, Nakazawa T, Nishiuchi Y, Yoshida T, Ohkubo T, Kobayashi Y
    • Journal Title

      J Phys Chem B

      Volume: (in press)

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Presentation] 絹蛋白質の物理化学的基礎2011

    • Author(s)
      小林祐次
    • Organizer
      奈良女子大学古代史・環境史プロテオミクス研究創成事業本部主催シンポジウム
    • Place of Presentation
      奈良県奈良市
    • Year and Date
      2011-11-12
    • Related Report
      2011 Annual Research Report
  • [Presentation] 合理的創薬を目指した構造解析と熱力学的解析2011

    • Author(s)
      小林祐次
    • Organizer
      第47回熱測定討論会
    • Place of Presentation
      群馬県桐生市
    • Related Report
      2011 Annual Research Report 2011 Final Research Report
  • [Presentation] 立体構造情報を用いた終末糖化産物AGE受容体とHMGB1間の相互作用解析2010

    • Author(s)
      小林祐次, 他
    • Organizer
      日本結晶学会年会
    • Place of Presentation
      神戸
    • Year and Date
      2010-12-08
    • Related Report
      2010 Annual Research Report
  • [Presentation] 炭酸脱水酵素の触媒反応におけるプロトントランスファの量子化学的解析のためのモデル-互変異性が変化する状態にあるHis64のスウィング運動の関与について2010

    • Author(s)
      小林祐次, 他
    • Organizer
      日本結晶学会年会
    • Place of Presentation
      神戸
    • Year and Date
      2010-12-07
    • Related Report
      2010 Annual Research Report
  • [Presentation] 毒素原性大腸菌の線毛形成蛋白質CofAの結晶化2010

    • Author(s)
      小林祐次、西村光広, 他
    • Organizer
      日本結晶学会年会
    • Place of Presentation
      大阪
    • Year and Date
      2010-12-05
    • Related Report
      2010 Annual Research Report
  • [Presentation] Thermodynamic and structural analysis of PPARγ-ligand interaction2010

    • Author(s)
      M.Nishimura, Y Kobayashi
    • Organizer
      5th International Peptide Symposium in conjyunction with 47th Japanese Peptide Symposium
    • Place of Presentation
      京都
    • Year and Date
      2010-12-05
    • Related Report
      2010 Annual Research Report
  • [Presentation] Inter-molecular Interactions between Adiponectin and AdipoRs2010

    • Author(s)
      Y.Kobayashi, et al.
    • Organizer
      5th International Peptide Symposium in conjyunction with 47th Japanese Peptide Symposium
    • Place of Presentation
      京都
    • Year and Date
      2010-12-05
    • Related Report
      2010 Annual Research Report
  • [Presentation] The Crystal Structure of the Collagen Model Peptide containing 4(S)-hydroxyproline-proline-glycine Repeats2010

    • Author(s)
      Y.Kobayashi, et al.
    • Organizer
      5th International Peptide Symposium in conjyunction with 47th Japanese Peptide Symposium
    • Place of Presentation
      京都
    • Year and Date
      2010-12-05
    • Related Report
      2010 Annual Research Report
  • [Presentation] Identification of conformational heterogeneity of Collagen Model Peptide by19 F-NMR2010

    • Author(s)
      Y.Kobayashi, et al.
    • Organizer
      5th International Peptide Symposium in conjyunction with 47th Japanese Peptide Symposium
    • Place of Presentation
      京都
    • Year and Date
      2010-12-05
    • Related Report
      2010 Annual Research Report
  • [Presentation] 終末糖化産物受容体(RAGE)リガンド結合領域の結晶化2010

    • Author(s)
      鬼頭万里子、小林祐次, 他
    • Organizer
      日本結晶学会年会
    • Place of Presentation
      大阪
    • Year and Date
      2010-12-04
    • Related Report
      2010 Annual Research Report
  • [Presentation] PPARγ-LBD/FK-614複合体のX線結晶構造解析2010

    • Author(s)
      小林祐次, 他
    • Organizer
      日本結晶学会年会
    • Place of Presentation
      大阪
    • Year and Date
      2010-12-03
    • Related Report
      2010 Annual Research Report
  • [Presentation] 分子動力学法によるコンデンシンヒンジドメインの構造解析2010

    • Author(s)
      小林祐次, 他
    • Organizer
      第24回 分子シミュレーション討論会
    • Place of Presentation
      福井
    • Year and Date
      2010-11-24
    • Related Report
      2010 Annual Research Report
  • [Presentation] C 型肝炎ウイルス(HCV)のコア蛋白質とヒト プロテアソーム活性化因子PA28γの相互作用をターゲットとしたC型肝炎治療薬の探索2010

    • Author(s)
      小林祐次, 他
    • Organizer
      日本薬学会近畿支部大会
    • Place of Presentation
      大阪
    • Year and Date
      2010-10-30
    • Related Report
      2010 Annual Research Report
  • [Presentation] 真正細菌由来シャペロンとその阻害分子の相互作用解析2010

    • Author(s)
      小林祐次, 他
    • Organizer
      日本薬学会近畿支部大会
    • Place of Presentation
      大阪
    • Year and Date
      2010-10-30
    • Related Report
      2010 Annual Research Report
  • [Presentation] リポカリン型プロスタグランジンD合成酵素の酵素反応機構の解明2010

    • Author(s)
      小林祐次, 他
    • Organizer
      日本薬学会近畿支部大会
    • Place of Presentation
      大阪
    • Year and Date
      2010-10-30
    • Related Report
      2010 Annual Research Report
  • [Presentation] PPARγ-リガンド複合体の分子間相互作用解析2010

    • Author(s)
      西村光広、小林祐次, 他
    • Organizer
      熱測定学会
    • Place of Presentation
      三重
    • Year and Date
      2010-09-27
    • Related Report
      2010 Annual Research Report
  • [Presentation] Structural and thermodynamic analyses on complex of PPARγ and its ligand2010

    • Author(s)
      Y.Kobayashi
    • Organizer
      The 13th Akabori Conference : German-Japanese Symposium on Peptide Science
    • Place of Presentation
      ドイツ
    • Year and Date
      2010-09-01
    • Related Report
      2010 Annual Research Report
  • [Presentation] PPARγ-リガンド複合体の結晶構造解析及び熱力学的相互作用解析2010

    • Author(s)
      西村光広、小林祐次, 他
    • Organizer
      Biophysical Interaction Analysis symposium 2010
    • Place of Presentation
      東京
    • Year and Date
      2010-07-16
    • Related Report
      2010 Annual Research Report
  • [Presentation] 病原性大腸菌腸管付着因子CofJのX 線結晶構造解析2010

    • Author(s)
      小林祐次, 他
    • Organizer
      蛋白質科学会年会
    • Place of Presentation
      北海道
    • Year and Date
      2010-06-17
    • Related Report
      2010 Annual Research Report
  • [Presentation] リポカリン型プロスタグランジンD合成酵素の基質認識機構2010

    • Author(s)
      小林祐次, 他
    • Organizer
      蛋白質科学会年会
    • Place of Presentation
      北海道
    • Year and Date
      2010-06-16
    • Related Report
      2010 Annual Research Report
  • [Presentation] Molecular interaction of PPARγ with its ligand2010

    • Author(s)
      Y.Kobayashi
    • Organizer
      12th Naples Workshop on Bioactive Peptides
    • Place of Presentation
      イタリア
    • Year and Date
      2010-06-06
    • Related Report
      2010 Annual Research Report
  • [Presentation] 立体構造に基づく終末糖化産物AGE受容体とリガンド間の相互作用解析2010

    • Author(s)
      小林祐次
    • Organizer
      第57回日本生化学会近畿支部例会
    • Place of Presentation
      奈良
    • Year and Date
      2010-05-22
    • Related Report
      2010 Annual Research Report
  • [Presentation] リポカリン型プロスタグランジンD合成酵素の立体構造決定とリガンド認識様式の解明2010

    • Author(s)
      小林祐次, 他
    • Organizer
      第57回日本生化学会近畿支部例会
    • Place of Presentation
      奈良
    • Year and Date
      2010-05-22
    • Related Report
      2010 Annual Research Report
  • [Presentation] Structural insights into the activation of PPARγ by organotin compounds2010

    • Author(s)
      Y.Kobayashi
    • Organizer
      The 5th Seoul-Kyoto-Osaka Joint Symposium on Pharmaceutical Sciences for Young Scientists
    • Place of Presentation
      大阪
    • Year and Date
      2010-05-19
    • Related Report
      2010 Annual Research Report
  • [Presentation] 立体構造に基づく終末糖化産物AGE受容体とリガンド間の相互作用解析2010

    • Author(s)
      藤田直子, 小林祐次, ほか
    • Organizer
      日本薬学会 第130回年会
    • Place of Presentation
      岡山
    • Year and Date
      2010-03-29
    • Related Report
      2009 Annual Research Report
  • [Presentation] Molecular interaction of PPAR□with its ligand2010

    • Author(s)
      小林祐次
    • Organizer
      12th Naples Workshop on Bioactive Peptides
    • Place of Presentation
      イタリア
    • Related Report
      2011 Final Research Report
  • [Presentation] Structural and thermodynamic analyses on complex of PPAR γ and its ligand2010

    • Author(s)
      小林祐次
    • Organizer
      The 13th Akabori Conference : German-Japanese Symposium on Peptide Science
    • Place of Presentation
      ドイツ
    • Related Report
      2011 Final Research Report
  • [Presentation] 構造情報に基づく合理的薬剤設計―RAGEアンタゴニスト薬の探索2009

    • Author(s)
      小林祐次, ほか
    • Organizer
      第19回日本メイラード学会
    • Place of Presentation
      金沢
    • Year and Date
      2009-11-20
    • Related Report
      2009 Annual Research Report
  • [Presentation] 合理的薬物設計を目指したタンパク質の構造と相互作用解析2009

    • Author(s)
      小林祐次
    • Organizer
      ハイペップ研究所沖縄国際ワークショップ
    • Place of Presentation
      沖縄県うるま市
    • Year and Date
      2009-07-20
    • Related Report
      2009 Annual Research Report

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Published: 2009-04-01   Modified: 2016-04-21  

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