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Thermodynamic and structural study on the interaction of an enzyme and a substrate analogue for development of new therapy for lysosomal diseases

Research Project

Project/Area Number 21390314
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Pediatrics
Research InstitutionMeiji Pharmaceutical University

Principal Investigator

SAKURABA Hitoshi  明治薬科大学, 薬学部, 教授 (60114493)

Co-Investigator(Kenkyū-buntansha) TOGAWA Tadayasu  明治薬科大学, 薬学部, 教授 (80260983)
TSUKIMURA Takahiro  明治薬科大学, 薬学部, 助教 (50632783)
Co-Investigator(Renkei-kenkyūsha) TOGAWA Tadayasu  明治薬科大学, 薬学部, 教授 (80260983)
TSUKIMURA Takahiro  明治薬科大学, 薬学部, 助教 (50632783)
Project Period (FY) 2009 – 2012
Project Status Completed (Fiscal Year 2012)
Budget Amount *help
¥16,900,000 (Direct Cost: ¥13,000,000、Indirect Cost: ¥3,900,000)
Fiscal Year 2012: ¥2,600,000 (Direct Cost: ¥2,000,000、Indirect Cost: ¥600,000)
Fiscal Year 2011: ¥3,380,000 (Direct Cost: ¥2,600,000、Indirect Cost: ¥780,000)
Fiscal Year 2010: ¥4,290,000 (Direct Cost: ¥3,300,000、Indirect Cost: ¥990,000)
Fiscal Year 2009: ¥6,630,000 (Direct Cost: ¥5,100,000、Indirect Cost: ¥1,530,000)
Keywordsリソソーム病 / ファブリー病 / ポンペ病 / α‐ガラクトシダーゼ A / 酸性α-グル コシダーゼ / α-ガラクトシダーゼ / α-グルコシダーゼ / リソソーム酵素 / 基質類似体 / 酵素増強療法 / 分子間相互作用
Research Abstract

To obtain basic information useful for development of chaperone therapy for Fabry disease and Pompe disease, we examined the molecular interactions between α-galactosidase A /acid α-glucosidase and their substrate analogues by means of isothermal titration calorimetry and surface plasmon resonance biosensor assays, and first determined the thermodynamic and binding-kinetics parameters. Furthermore, the structural analysis in silico revealed that the chemicals fit into the active site pocket of the enzyme molecule and undergo hydrogen bonding with residues comprising the pocket. The side chain of the chemicals is thought to be oriented towards the entrance of the pocket. On the basis of the results, we designed a new chemical that strongly stabilizes a mutant enzyme. Thermodynamic and structural studies should provide us with a lot of information for improving chaperone therapy for Fabry disease and Pompe disease.

Report

(5 results)
  • 2012 Annual Research Report   Final Research Report ( PDF )
  • 2011 Annual Research Report
  • 2010 Annual Research Report
  • 2009 Annual Research Report
  • Research Products

    (62 results)

All 2012 2011 2010 2009 Other

All Journal Article (24 results) (of which Peer Reviewed: 23 results) Presentation (26 results) (of which Invited: 2 results) Book (8 results) Remarks (4 results)

  • [Journal Article] Mutant α-galactosidaseA with M296I does not cause elevationof the plasmaglobotriaosylsphingosine level.2012

    • Author(s)
      Mitobe S., Togawa T., Tsukimura T., Kodama T., Tanaka T., Doi K., Noiri E.,Akai Y., Saito Y., Yoshino M.,Takenaka T., Saito S., Ohno K.,Sakuraba H.
    • Journal Title

      Mol.Genet. Metab.

      Volume: 107 Pages: 623-626

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Fabry disease: Biochemical, pathological and structural studies of the α-galactosidase A with E66Q amino acid substitution.2012

    • Author(s)
      Togawa T., Tsukimura T., Kodama T., Tanaka T., Kawashima I., Saito S., Ohno K., Fukushige T., Kanekura T., Satomura A., D.-H. Kang, B. H. Lee, H.-W. Yoo, Doi K., Noiri E., SakurabaH.
    • Journal Title

      Mol. Genet. Metab.

      Volume: 105 Pages: 615-620

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Database of the clinical phenotypes, genotypes, and mutant arylsulfatase structures in mucopolysaccharidosis type VI.2012

    • Author(s)
      Saito S., Ohono K., Sekijima M., Suzuki T., Sakuraba H.
    • Journal Title

      J. Hum. Genet.

      Volume: 57 Pages: 280-282

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Structural bases of Wolman disease and cholesteryl ester storage disease.2012

    • Author(s)
      Saito S., Ohno K., Suzuki T., Sakuraba H.
    • Journal Title

      Mol. Genet. Metab.

      Volume: 105 Pages: 244-248

    • Related Report
      2012 Annual Research Report 2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Efficient uptakeof recombinant α-galactosidase A produced with a gene-manipulated yeast by Fabry mice kidneys.2012

    • Author(s)
      Tsukimura T., Kawashima I., Togawa T., Kodama T., Suzuki T., Watanabe T., Chiba Y., Jigami Y., Fukushige T., Kanekura T., Sakuraba H.
    • Journal Title

      Mol. Med.

      Volume: 18 Pages: 76-82

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Database of the clinical phenotypes, genotypes, and mutant arylsulfatase B structures in mucopolysaccharidosis type VI2012

    • Author(s)
      Saito S, et al
    • Journal Title

      J.Hum.Genet.

      Volume: 57 Issue: 4 Pages: 280-282

    • DOI

      10.1038/jhg.2012.6

    • Related Report
      2012 Annual Research Report 2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Structural bases of Wolman disease and cholesteryl ester storage disease2012

    • Author(s)
      Saito S, et al
    • Journal Title

      Mol.Genet.Metab.

      Volume: 105 Pages: 244-248

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Lyso-GM2 ganglioside: A possible biomarker ofTay-Sachs disease and Sandhoff disease.2011

    • Author(s)
      Kodama T., Togawa T., Tsukimura T., Kawashima I., Matsuoka K., Kitakaze K., Tsuji D., Itoh K., Ishida Y., Suzuki M., Suzuki T., Sakuraba H.
    • Journal Title

      PLoS ONE.

      Volume: 6

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Biochemical and structural study on a S529V mutant acid α -glucosidase responsive to pharmacological chaperones.2011

    • Author(s)
      Tajima Y., Saito S., Ohno K., Tsukimura T., Tsujino S., Sakuraba H.
    • Journal Title

      J. Hum. Genet.

      Volume: 56 Pages: 440-446

    • NAID

      10030659730

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Fabry-database.orgdatabase of the clinical phenotypes, genotypes and mutant α-galactosidase A structures in Fabry disease.2011

    • Author(s)
      Saito S., Ohno K., Sakuraba H.
    • Journal Title

      J. Hum. Genet.

      Volume: 56 Pages: 467-468

    • NAID

      10030659894

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Molecular mechanism for stabilization of amutant α -galactosidase A involvingM51I amino acid substitution by imino sugars.2011

    • Author(s)
      Tsukimura T., Chiba Y., Ohno K., SaitoS., Tajima Y., Sakuraba H.
    • Journal Title

      Mol. Genet. Metab.

      Volume: 103 Pages: 26-32

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Efficient uptake of recombinant α-galactosidase A produced with a gene-manipulated yeast by Fabry mice kidneys2011

    • Author(s)
      Tsukimura, et al
    • Journal Title

      Mol.Med.

      Volume: 18 Issue: 1 Pages: 76-82

    • DOI

      10.2119/molmed.2011.00248

    • Related Report
      2012 Annual Research Report 2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Biochemical and structural study on a S529V mutant acid α-glucosidase responsive to pharmacological chaperones2011

    • Author(s)
      Tajima Y, et al
    • Journal Title

      J.Hum.Genet.

      Volume: 56 Issue: 6 Pages: 440-446

    • DOI

      10.1038/jhg.2011.36

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Fabry-database.org : database of the clinical phenotypes, genotypes and mutant α-galactosidase A structures in Fabry disease2011

    • Author(s)
      Saito S, et al
    • Journal Title

      J.Hum.Genet.

      Volume: 56 Issue: 6 Pages: 467-468

    • DOI

      10.1038/jhg.2011.31

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Molecular mechanism for stabilization of a mutant α-galactosidase A involving M51I amino acid substitution by imino sugars.2011

    • Author(s)
      Tsukimura T, et al.
    • Journal Title

      Mol.Genet.Metab.

      Volume: 101(in press)

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Tissue and plasma globortiaosylsphingosine could be a biomarker for assessing enzyme replacement therapy for Fabry disease.2010

    • Author(s)
      Togawa T., Kawashima I., Kodama T.,Tsukimura T., Suzuki T., Fukushige T., Kanekura T., Sakuraba H.
    • Journal Title

      Biochem. Biophys. Res.Commun.

      Volume: 399 Pages: 716-720

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Structural basis of neuronal ceroid lipofuscinosis 1.2010

    • Author(s)
      Ohno K., Saito S., Sugawara K., Suzuki T., Togawa T., Sakuraba H.
    • Journal Title

      Brain Dev.

      Volume: 32 Pages: 524-530

    • NAID

      10027491894

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Prediction of the clinical phenotype of Fabry disease based on protein sequential and structural information.2010

    • Author(s)
      Saito S., Ohno K., Sese J., SugawaraK., Sakuraba H.
    • Journal Title

      J. Hum.Genet.

      Volume: 55 Pages: 175-178

    • NAID

      10030734088

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Prediction of the clinical phenotype of Fabry disease based on protein sequential and structural information.2010

    • Author(s)
      Saito S, et al.
    • Journal Title

      J.Hum.Genet.

      Volume: 55 Pages: 175-178

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Tissue and plasma globortiaosylsphingosine could be a biomarker for assessing enzyme replacement therapy for Fabry disease.2010

    • Author(s)
      Togawa T, et al.
    • Journal Title

      Biochem.Biophys.Res.Commun.

      Volume: 399 Pages: 716-720

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Plasma globotriaosylsphingosine as a biomarker of Fabry disease2010

    • Author(s)
      Togawa T, et al.
    • Journal Title

      Mol.Genet.Metab. 97(in press)

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Structural modeling of mutant α -glucosidasesresulting in a processing/transport defect in Pompe disease.2009

    • Author(s)
      Sugawara K., Saito S., Sekijima M.,Ohno K., Tajima Y., Kroos M.A., ReuserA.J.J., Sakuraba H.
    • Journal Title

      J. Hum. Genet.

      Volume: 54 Pages: 324-330

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Molecular interaction of imino sugars with human α-galactosidase : Insight into the mechanism of complex formation and pharmacological chaperone action in Fabry disease2009

    • Author(s)
      Sugawara K, et al.
    • Journal Title

      Mol.Genet.Metab. 96

      Pages: 233-238

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 酸性α-グルコシダーゼとポンペ病2009

    • Author(s)
      櫻庭均
    • Journal Title

      ポンペ病(衛藤義勝 監修)(診断と治療社)(東京)

      Pages: 18-24

    • Related Report
      2009 Annual Research Report
  • [Presentation] 酵素/低分子化合物複合体形成機構の熱力学的・構造学的検討.2012

    • Author(s)
      櫻庭 均
    • Organizer
      第1回日本シャペロン療法研究会, 遺伝性難病の治療を目指して
    • Place of Presentation
      東京
    • Year and Date
      2012-11-11
    • Related Report
      2012 Final Research Report
  • [Presentation] ファブリー病の分子病態と腎障害.2012

    • Author(s)
      櫻庭 均
    • Organizer
      第47回日本小児腎臓病学会学術集会
    • Place of Presentation
      東京
    • Year and Date
      2012-06-29
    • Related Report
      2012 Final Research Report
  • [Presentation] 分子設計に基づくファブリー病新規治療戦略.2012

    • Author(s)
      櫻庭 均
    • Organizer
      第57回(社)日本透析医学会学術集会・総会
    • Place of Presentation
      札幌
    • Year and Date
      2012-06-23
    • Related Report
      2012 Final Research Report
  • [Presentation] 蛋白尿に潜む疾患ファブリー病.2012

    • Author(s)
      櫻庭 均
    • Organizer
      第55回日本腎臓学会学術総会
    • Place of Presentation
      横浜
    • Year and Date
      2012-06-01
    • Related Report
      2012 Final Research Report
  • [Presentation] 神経内科医が遭遇する疾患ファブリー病.2012

    • Author(s)
      櫻庭 均
    • Organizer
      第53回日本神経学会学術大会
    • Place of Presentation
      東京
    • Year and Date
      2012-05-24
    • Related Report
      2012 Final Research Report
  • [Presentation] Lyso-glycosphingolipids as biomarkers of sphingolipidoses.4th International Forum for Lysosomal Storage Disorders &2012

    • Author(s)
      Sakuraba H.
    • Organizer
      17th Japanese Society for Lysosomal Disorders
    • Place of Presentation
      Tokyo, Japan.
    • Related Report
      2012 Final Research Report
  • [Presentation] New treatment of Fabrydisease.2012

    • Author(s)
      Sakuraba H.
    • Organizer
      Asian Congress for Inherited Metabolic Diseases (ACIMD) Satellite Symposium 2011 Tokyo Meeting on Lysosomal Storage Disease Screening
    • Place of Presentation
      Tokyo, Japan.
    • Related Report
      2012 Final Research Report
  • [Presentation] Lyso-glycosphingolipids as biomarkers of sphingolipidoses.2012

    • Author(s)
      Sakuraba H.
    • Organizer
      4th International Forum for Lysosomal Storage Disorders & 17th Japanese Society for Lysosomal Disorders
    • Place of Presentation
      Tokyo, Japan.
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] Construction of a database and development of new enzyme replacement therapy for Fabry disease.2012

    • Author(s)
      Sakuraba H.
    • Organizer
      The 3rd Medicinal Chemistry Seminar (2012) of JSPS Asia-Africa Science Platform Program
    • Place of Presentation
      Tokyo, Japan.
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] New method for determination of globotriaosylceramide in plasma and urine from Fabry patients.2012

    • Author(s)
      Takasawa K, et al.
    • Organizer
      The 3rd Medicinal Chemistry Seminar (2012) of JSPS Asia-Africa Science Platform Program
    • Place of Presentation
      Tokyo, Japan
    • Related Report
      2012 Annual Research Report
  • [Presentation] Fabry病の診断と治療.2011

    • Author(s)
      櫻庭 均
    • Organizer
      第37回皮膚かたち研究会
    • Place of Presentation
      東京
    • Year and Date
      2011-07-22
    • Related Report
      2012 Final Research Report
  • [Presentation] ファブリー病の診断治療戦 略-最新のスク リーニング結果報告.2011

    • Author(s)
      櫻庭 均
    • Organizer
      第55回日本腎臓学会学術総会
    • Place of Presentation
      横浜
    • Year and Date
      2011-06-16
    • Related Report
      2012 Final Research Report
  • [Presentation] ファブリー病の診断治療戦略-最新のスクリーニング結果報告2011

    • Author(s)
      櫻庭均
    • Organizer
      第55回日本腎臓学会学術総会
    • Place of Presentation
      横浜
    • Year and Date
      2011-06-16
    • Related Report
      2011 Annual Research Report
  • [Presentation] Development of new enzymereplacement therapy for Fabry disease based on molecular designing.2011

    • Author(s)
      Sakuraba H.
    • Organizer
      The 31st Naito Conference, Glycan Expression and Regulation [II]: Metabolites, Stress Response, Microdomains, and Beyond
    • Place of Presentation
      Sapporo, Japan
    • Related Report
      2012 Final Research Report
  • [Presentation] High-risk screening,database and biomarkers of Fabry disease.2011

    • Author(s)
      Sakuraba H.
    • Organizer
      The 13th Annual Asia LSD Symposium
    • Place of Presentation
      Hong Kong, China.
    • Related Report
      2012 Final Research Report
  • [Presentation] High-risk screening, database and biomarkers of Fabry disease2011

    • Author(s)
      Sakuraba H
    • Organizer
      The 13th Annual Asia LSD Symposium
    • Place of Presentation
      Hong Kong, China
    • Related Report
      2011 Annual Research Report
  • [Presentation] New treatment of Fabry disease2011

    • Author(s)
      Sakuraba H
    • Organizer
      Asian Congress for Inherited Metabolic Diseases (ACIMD) Satellite Symposium 2011 Tokyo Meeting on Lysosomal Storage Disease Screening
    • Place of Presentation
      Tokyo, Japan
    • Related Report
      2011 Annual Research Report
  • [Presentation] Development of new enzyme replacement therapy for Fabry disease based on molecular designing2011

    • Author(s)
      Sakuraba H
    • Organizer
      The 31st Naito Conference, Glycan Expression and Regulation [II] : Metabolites, Stress Response, Microdomains, and Beyond
    • Place of Presentation
      Sapporo, Japan
    • Related Report
      2011 Annual Research Report
  • [Presentation] ファブリー病の診断と治療へのアプローチ.2010

    • Author(s)
      櫻庭 均
    • Organizer
      第34回日本小児皮膚科学会学術大会
    • Place of Presentation
      松山
    • Year and Date
      2010-07-03
    • Related Report
      2012 Final Research Report
  • [Presentation] ファブリー病を知り、診断と治療に生かすために.2010

    • Author(s)
      櫻庭 均
    • Organizer
      第53回日本腎臓学会学術総会
    • Place of Presentation
      神戸
    • Year and Date
      2010-06-17
    • Related Report
      2012 Final Research Report
  • [Presentation] ファブリー病を知り、診断と治療に生かすために2010

    • Author(s)
      櫻庭均
    • Organizer
      第53回日本腎臓学会学術総会
    • Place of Presentation
      神戸
    • Year and Date
      2010-06-17
    • Related Report
      2010 Annual Research Report
  • [Presentation] ファブリー病の基礎と臨床-診断と治療のための小知識.2010

    • Author(s)
      櫻庭 均
    • Organizer
      第51回日本神経学会総会
    • Place of Presentation
      東京
    • Year and Date
      2010-05-22
    • Related Report
      2012 Final Research Report
  • [Presentation] Development of enzyme replacement therapy for Fabry disease utilizing α-N-acetylgalactosaminidase.2010

    • Author(s)
      Sakuraba H.
    • Organizer
      Mini-symposium on Fabry Disease in2010
    • Place of Presentation
      Seoul, Korea.
    • Year and Date
      2010-02-05
    • Related Report
      2012 Final Research Report
  • [Presentation] ファブリー病疑い例から確定診断に至るプロセスに関して.2010

    • Author(s)
      櫻庭 均
    • Organizer
      第109回日本皮膚学会総会
    • Place of Presentation
      大阪
    • Related Report
      2012 Final Research Report
  • [Presentation] ファブリー病: その診断から治療へ.2009

    • Author(s)
      櫻庭 均
    • Organizer
      第50回日本神経学会総会
    • Place of Presentation
      仙台
    • Year and Date
      2009-05-21
    • Related Report
      2012 Final Research Report
  • [Presentation] Structural modeling of mutant alpha-glucosidase resulting in a processing/transport defect in Pompe disease2009

    • Author(s)
      Sugawara K, et al.
    • Organizer
      Steps Forward in Pompe Disease Symposium
    • Place of Presentation
      Munich, Germany
    • Related Report
      2009 Annual Research Report
  • [Book] ゴーシェ病. 今日の小児治療指針, 第15版2012

    • Author(s)
      櫻庭 均
    • Publisher
      医学書院
    • Related Report
      2012 Annual Research Report
  • [Book] ファブリー病Up Date2012

    • Author(s)
      櫻庭 均
    • Publisher
      診断と治療社
    • Related Report
      2012 Annual Research Report
  • [Book] ガラクトシアリドーシス.ムコ多糖症UPDATE2011

    • Author(s)
      櫻庭均, 他
    • Total Pages
      2
    • Publisher
      イーエスメディックス
    • Related Report
      2011 Annual Research Report
  • [Book] ライソゾーム病に対する治療の進歩と,そのムコ多糖症治療法開発への応用.ムコ多糖症UPDATE2011

    • Author(s)
      櫻庭均, 他
    • Total Pages
      5
    • Publisher
      イーエスメディックス
    • Related Report
      2011 Annual Research Report
  • [Book] リソゾーム.モデル動物利用マニュアル「生物機能モデルと新しいリソース・リサーチツール」2011

    • Author(s)
      櫻庭均, 他
    • Total Pages
      3
    • Publisher
      エル・アイ・シー
    • Related Report
      2011 Annual Research Report
  • [Book] ライソゾームの糖脂質代謝.ライソゾーム病-病態・診断の最近の進歩2011

    • Author(s)
      櫻庭均
    • Total Pages
      5
    • Publisher
      診断と治療社
    • Related Report
      2011 Annual Research Report
  • [Book] ライソゾーム酵素の立体構造とライソゾーム病.ライソゾーム病-病態・診断の最近の進歩2011

    • Author(s)
      櫻庭均
    • Total Pages
      10
    • Publisher
      診断と治療社
    • Related Report
      2011 Annual Research Report
  • [Book] 酵素利用技術大系-基礎・解析から改変・高機能化・産業利用まで2010

    • Author(s)
      櫻庭均, 他
    • Total Pages
      7
    • Publisher
      エヌ・ティー・エス
    • Related Report
      2010 Annual Research Report
  • [Remarks]

    • URL

      http://fabry-database.org/

    • Related Report
      2012 Final Research Report
  • [Remarks]

    • URL

      http://www.fabry-database.org

    • Related Report
      2011 Annual Research Report
  • [Remarks]

    • URL

      http://mps6-database.org

    • Related Report
      2011 Annual Research Report
  • [Remarks]

    • URL

      http://www.fabry-database.org

    • Related Report
      2010 Annual Research Report

URL: 

Published: 2009-04-01   Modified: 2019-07-29  

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