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Evaluation of genetic resources belonging to rice and root crops in Oceania

Research Project

Project/Area Number 21405016
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section海外学術
Research Field Breeding science
Research InstitutionHirosaki University

Principal Investigator

ISHIKAWA Ryuji  弘前大学, 農学生命科学部, 教授 (90202978)

Co-Investigator(Kenkyū-buntansha) SATO Yo-ichiro  総合地球環境学研究所, 研究部, 教授 (20145113)
SATO Tadashi  東北大学, 大学院・生命科学研究科, 准教授 (40134043)
NAKAMURA Ikuo  千葉大学, 大学院・園芸学研究科, 准教授 (50207867)
ICHITANI Katsuyuki  鹿児島大学, 農学部, 准教授 (10305162)
TANAKA Katsunori  弘前大学, 人文学部, 特任助教 (00450213)
MATTHEWS Peter  国立歴史民俗博物館, 准教授 (70281590)
HOSOYA Aoi  総合地球環境学研究所, 研究部, プロジェクト研究員 (40455233)
福田 善通  国際農林水産業研究センター, 生物資源領域, 主任研究員 (40399374)
Project Period (FY) 2009 – 2011
Project Status Completed (Fiscal Year 2011)
Budget Amount *help
¥17,940,000 (Direct Cost: ¥13,800,000、Indirect Cost: ¥4,140,000)
Fiscal Year 2011: ¥5,330,000 (Direct Cost: ¥4,100,000、Indirect Cost: ¥1,230,000)
Fiscal Year 2010: ¥5,460,000 (Direct Cost: ¥4,200,000、Indirect Cost: ¥1,260,000)
Fiscal Year 2009: ¥7,150,000 (Direct Cost: ¥5,500,000、Indirect Cost: ¥1,650,000)
Keywords野生イネ / Oryza rufipogon / 生活史特性 / 系統分化 / オーストラリア / 葉緑体 / 種間交雑 / 適応性 / 野生種 / 固有種 / 遺伝資源 / Oryza属 / 生殖隔離 / 標本 / オセアニア地区
Research Abstract

Asian Oryza rufipogon is a progenitor of cultivated rice, O. sativa. Distribution of the wild type is known to spread from Asia to Australia. On the other hand, Australian endemic species has been known as annual O. meridionalis. However, in this project, we define that Asian like perennial, meridionalis like perennial, and conventional annual species. The former two species are distinct from not only Asian species but also Australian species. All passport data are accompanied with GPS, ecological data, and molecular data, which enable researchers to visit repeatedly. Using whole genome analysis, we have identified two unique plastid genomes. Perennial and annual populations shared both plastid genomes. However, genetically, they have been differentiated and not exchanged genetic materials with each other. Hybrid analysis revealed that Australian perennial sharing higher similarity with O. meridionalis for nuclear and plastid genomes could not generate higher fertility with any other species. Probably the perennial population belongs to a new species. They are regarded to be valuable resources for rice breeding.

Report

(4 results)
  • 2011 Annual Research Report   Final Research Report ( PDF )
  • 2010 Annual Research Report
  • 2009 Annual Research Report
  • Research Products

    (46 results)

All 2012 2011 2010 2009 Other

All Journal Article (15 results) (of which Peer Reviewed: 6 results) Presentation (25 results) Book (3 results) Remarks (3 results)

  • [Journal Article] Chloroplast genome sequence confirms distinctness of Australian and Asian wild rice2012

    • Author(s)
      Waters, D.L.E., CJ.Nock, R.Ishikawa, N.Rice, RJ.Henry
    • Journal Title

      Ecology and Evolution

      Volume: 2 Pages: 211-217

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Henry (2011) Chloroplast genome sequence confirms distinctness of Australian and Asian wild rice2011

    • Author(s)
      Waters, D. L. E., CJ. Nock, R. Ishikawa, N. Rice, and RJ.
    • Journal Title

      Ecology and Evolution

      Volume: 2 Pages: 211-217

    • Related Report
      2011 Final Research Report
  • [Journal Article] Australian Oryza : Utility and Conservation2010

    • Author(s)
      Henry, RJ. , N. Rice, D. L. E. Waters, S. Kasem, R. Ishikawa, Y. Hao, S. Dillon, D. Crayn, R. Wing and D. Vaughan.
    • Journal Title

      Rice

      Pages: 235-241

    • Related Report
      2011 Final Research Report
  • [Journal Article] Expression of Indica rice OsBADH1 gene under salinity stress in transgenic tobacco2010

    • Author(s)
      Hasthanasombut, S., V. Ntui, K. Supaibulwatana, M. Mii and I. Nakamura
    • Journal Title

      Plant Biotech. Rep

      Volume: 4 Pages: 75-83

    • Related Report
      2011 Final Research Report
  • [Journal Article] Geneticmanipulation of Japonica rice using the OsBADH1 gene from Indica rice to improve salinity tolerance. Plant Cell Tiss2010

    • Author(s)
      Hasthanasombut, S., K. Supaibulwatana, M. Mii and I. Nakamura
    • Journal Title

      Organ Cult

      Volume: 104 Pages: 79-89

    • Related Report
      2011 Final Research Report
  • [Journal Article] The 'Routine-scape' of Broad Spectrum Farming Society, 1st International Landscape Archaeology Conference LAC20102010

    • Author(s)
      Hosoya, L.A.
    • Journal Title

      Leiden, Holland

    • Related Report
      2011 Final Research Report
  • [Journal Article] Divergent evolution of wild and cultivated subspecies of Triticum tim opheevii as revealed by the study of PolAJ gene.2010

    • Author(s)
      Takahashi, H., R.Bhuwan, K.Kato, I.Nakamura
    • Journal Title

      Genet.Res.Crop Evol.

      Volume: 57 Pages: 101-109

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Expression of Indica rice OsBADHJ gene under salinity stress in tran sgenic tobacco.2010

    • Author(s)
      Hasthanasombut, S., V.Ntui, K.Supaibulwatana, M.Mii, I.Nakamura
    • Journal Title

      Plant Biotech.Rep

      Volume: 4 Pages: 75-83

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Genetic manipulation of Japonica rice using the OsBADHJ gene from Indica rice to improve salinity tolerance.2010

    • Author(s)
      Hasthanasombut, S., K.Supaibu Iwatana, M.Mii, I.Nakamura
    • Journal Title

      Plant Cell Tiss.Organ Cult.

      Volume: 104 Pages: 79-89

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Haplotype diversity and molecular evolution at the rice Pikm locus for blast Resistance2010

    • Author(s)
      Ashikawa, I., J.Wu, T.Matsumoto, R.Ishikawa
    • Journal Title

      Journal of General Plant Pathology 76

      Pages: 37-42

    • NAID

      10029718925

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Genome-type-specific variation of the 19th intron sequence within the RNA polymerase I largest subunit gene in the genus Oryza2009

    • Author(s)
      Takahashi, H., T. Sato, Y-I. Sato, I. Nakamura.
    • Journal Title

      Plant Syst

      Volume: 282 Pages: 21-29

    • Related Report
      2011 Final Research Report
  • [Journal Article] Homologous recombination-mediated knock-in targeting of the MET1a gene for a maintenance DNA methyltransferase reproducibly reveals dosage-dependent spatiotemporal gene expression in rice2009

    • Author(s)
      Yamauchi, T., Y. Jozuka-Hisamori, S. Fukuda-Tanaka, R. Terada, I. Nakamura and S. Iida
    • Journal Title

      Plant J

      Volume: 60 Pages: 386-396

    • Related Report
      2011 Final Research Report
  • [Journal Article] Broad Spectrum Farming Society:Reconstruction of uses of wild food plants by East Asian early farmers from an ethnoarchaeological viewpoint, Cambridge University George Pitt-Rivers Laboratory Lunch Time Talk2009

    • Author(s)
      Hosoya, L.A.
    • Journal Title

      (Cambridge, England)

    • Related Report
      2011 Final Research Report
  • [Journal Article] What did Agriculture Bring to the Life?:The 'routine-scape' and social structurarisation in the formation of agricultural society, Centre of Excellence in Cultural Theory II Conference2009

    • Author(s)
      Hosoya, L.A.
    • Journal Title

      Tarin, Estonia

    • Related Report
      2011 Final Research Report
  • [Journal Article] Australian Oryza : Utility and Conservation2009

    • Author(s)
      Robert J.Henry, Nicole Rice, Daniel L.E.Waters, Shabana Kasem, Ryuji Ishikawa, Yin Hao, Sally Dillon, Darren Crayn, Rod Wing, Duncan Vaughan
    • Journal Title

      Rice Online first

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Presentation] 形態,SSR,ならびにWGSによるオーストラリアの野生イネ系統分化程度の評価2012

    • Author(s)
      大塚健太・小林雄・外和昌大・田中克典, 吉田健太郎, 夏目俊, 小杉俊一, 寺内良平・一谷勝之・中村郁郎・佐藤洋一郎・佐藤雅志・石川隆二
    • Organizer
      第121回日本育種学会
    • Place of Presentation
      宇都宮大学
    • Year and Date
      2012-03-29
    • Related Report
      2011 Annual Research Report
  • [Presentation] 形態,SSR,ならびにWGSによるオーストラリアの野生イネ系統分化程度の評価2012

    • Author(s)
      大塚健太・小林雄・外和昌大・田中克典,吉田健太郎,夏目俊,小杉俊一,寺内良平・一谷勝之・中村郁郎・佐藤洋一郎・佐藤雅志・石川隆二
    • Organizer
      第121回日本育種学会(宇都宮大学)
    • Place of Presentation
      宇都宮大学
    • Related Report
      2011 Final Research Report
  • [Presentation] オーストラリアの多年生野生イネ葉緑体多型評価と自然集団の多様性2012

    • Author(s)
      外和昌大・小林雄・田中克典・一谷勝之・中村郁郎・佐藤洋一郎・佐藤雅志・石川隆二
    • Organizer
      第121回日本育種学会
    • Place of Presentation
      宇都宮大学
    • Related Report
      2011 Annual Research Report 2011 Final Research Report
  • [Presentation] Evaluation of wild rice resources in Asia and Oceania by "de novo" collection-migration of wild rice before domestication2011

    • Author(s)
      Ishikawa, R
    • Organizer
      日本学術振興会アジア研究教育拠点事業「東アジア植物遺伝資源シンポジウム」
    • Place of Presentation
      岡山大学
    • Year and Date
      2011-10-27
    • Related Report
      2011 Annual Research Report
  • [Presentation] Evolutionary relation between Asian and Oceanian wild rices2011

    • Author(s)
      Kobayashi, Y., R.Ishikawa
    • Organizer
      日本学術振興会アジア研究教育拠点事業「東アジア植物遺伝資源シンポジウム」
    • Place of Presentation
      岡山大学
    • Year and Date
      2011-10-27
    • Related Report
      2011 Annual Research Report
  • [Presentation] オーストラリアにおけるイネ属種間雑種2011

    • Author(s)
      石川隆二・田中克典・一谷勝之・中村郁郎・佐藤洋一郎・佐藤雅志
    • Organizer
      日本遺伝学会第83回大会
    • Place of Presentation
      京都大学
    • Year and Date
      2011-09-22
    • Related Report
      2011 Annual Research Report
  • [Presentation] オーストラリアにおける多年生イネの集団構造2011

    • Author(s)
      小林雄・田中克典・一谷勝之・中村郁郎・佐藤洋一郎・佐藤雅志・石川隆二
    • Organizer
      第119回日本育種学会
    • Place of Presentation
      横浜市立大学
    • Related Report
      2011 Annual Research Report 2011 Final Research Report
  • [Presentation] オーストラリアにおけるイネ属種間雑種2011

    • Author(s)
      石川隆二・田中克典・一谷勝之・中村郁郎・佐藤洋一郎・佐藤雅志
    • Organizer
      日本遺伝学会第83回大会
    • Place of Presentation
      京都
    • Related Report
      2011 Final Research Report
  • [Presentation] Evaluation of wild rice resources in Asia and Oceania by de novo collection. migration of wild rice before domestication2011

    • Author(s)
      Ishikawa, R.
    • Organizer
      東アジア植物遺伝資源シンポジウム
    • Place of Presentation
      岡山大学
    • Related Report
      2011 Final Research Report
  • [Presentation] Evolutionary relation between Asian and Oceanian wild rices2011

    • Author(s)
      Kobayashi, Y. and R. Ishikawa
    • Organizer
      日本学術振興会アジア研究教育拠点事業
    • Place of Presentation
      東アジア植物遺伝資源シンポジウム(岡山大学)
    • Related Report
      2011 Final Research Report
  • [Presentation] アジアならびにオセアニア地区におけるO.rufipogonの遺伝的分化2010

    • Author(s)
      ハオイン・小林雄・一谷勝之・田中克典・中村郁郎・佐藤雅志・佐藤洋一郎・石川隆二
    • Organizer
      第118回日本育種学会
    • Place of Presentation
      秋田県立大学
    • Year and Date
      2010-09-25
    • Related Report
      2010 Annual Research Report
  • [Presentation] バンコクの3倍体野生イネ(BKK系統)の起源2010

    • Author(s)
      真壁壮・高橋弘子・石川隆二・佐藤雅志・佐藤洋一郎・中村郁郎
    • Organizer
      第118回日本育種学会
    • Place of Presentation
      秋田県立大学
    • Year and Date
      2010-09-25
    • Related Report
      2010 Annual Research Report
  • [Presentation] Ploa1遺伝子第19イントロンの解析によるブラシ堀の類縁関係2010

    • Author(s)
      新藤春香・高橋弘子・中村郁郎
    • Organizer
      第118回日本育種学会
    • Place of Presentation
      秋田県立大学
    • Year and Date
      2010-09-25
    • Related Report
      2010 Annual Research Report
  • [Presentation] oryza属におけるオセアニア型とアジア型rufipogonの系統分化オーストラリア野生イネの集団構造解析2010

    • Author(s)
      小林雄・田中克典・一谷勝之・中村郁郎・佐藤洋一郎・佐藤雅志・石川隆二
    • Organizer
      第5回東北育種研究集会
    • Place of Presentation
      東東大学
    • Year and Date
      2010-08-10
    • Related Report
      2010 Annual Research Report
  • [Presentation] Oryza属におけるオセアニア型とアジア型rufipogonの系統分化2010

    • Author(s)
      石川隆二・本多剛志・ハオイン・田中克典・一谷勝之・中村郁郎・佐藤雅志・佐藤洋二
    • Organizer
      第117回日本育種学会
    • Place of Presentation
      京都大学
    • Related Report
      2011 Final Research Report
  • [Presentation] アジアならびにオセアニア地区におけるO. rufipogonの遺伝的分化2010

    • Author(s)
      ハオイン・小林雄・一谷勝之・田中克典・中村郁郎・佐藤雅志・佐藤洋一郎・石川隆二
    • Organizer
      第118回日本育種学会
    • Place of Presentation
      秋田県立大学
    • Related Report
      2011 Final Research Report
  • [Presentation] 日本型イネの核ゲノムに記録された葉緑体DNAの進化2010

    • Author(s)
      中村郁郎・高橋弘子・加藤さやか・田中克典・佐藤洋一郎
    • Organizer
      育研12別1 : 95
    • Related Report
      2011 Final Research Report
  • [Presentation] (弘大農生,神大院農)野生イネAAゲノム種における細胞質多様性程度の比較2009

    • Author(s)
      ハオイン・石井尊生・石川隆二
    • Organizer
      日本育種学会、第116回講演会
    • Place of Presentation
      北海道大学
    • Year and Date
      2009-09-25
    • Related Report
      2011 Final Research Report
  • [Presentation] Evaluation and Utilization of Core collection and de novo collection2009

    • Author(s)
      Ishikawa, R
    • Organizer
      International Symposium on Wild Rice 2009
    • Place of Presentation
      Bangkok, Thailand
    • Related Report
      2011 Final Research Report
  • [Presentation] Utilization of Core collection as Japanese National bio-resources and complement with de novo collection2009

    • Author(s)
      Ishikawa, R
    • Organizer
      IRRI, International Rice Genetics Symposium
    • Place of Presentation
      Manila,Philipines
    • Related Report
      2011 Final Research Report
  • [Presentation] BKK strain : natural triploid wild rice found in Bangkok2009

    • Author(s)
      Makabe, S., H. Takahashi, M. Akimoto, H. Urairong, R. Ishikawa, T. Sato, Y-I. Sato and I. Nakamura
    • Organizer
      Thailand
    • Place of Presentation
      Wild Rice
    • Related Report
      2011 Final Research Report
  • [Presentation] Evolutionary analysis of two plastid DNA sequences in Oryza AA genome species2009

    • Author(s)
      Takahashi, H., Y-I. Sato and I. Nakamura
    • Organizer
      Wild Rice
    • Related Report
      2011 Final Research Report
  • [Presentation] Oryza officinalis accessions found in South Sulawesi of Indonesia2009

    • Author(s)
      Sjahril, R., M. Riadi, M. D. Rahim, H. Takahashi, T. Sato and I. Nakamura
    • Organizer
      Wild Rice
    • Related Report
      2011 Final Research Report
  • [Presentation] Nuclear copies of plastid DNA in the japonica rice genome record dynamic speciation of Asian AA genome species2009

    • Author(s)
      Nakamura, I., H. Takahashi, S. Kato, K. Tanaka and Y-I. Sato
    • Organizer
      Wild Rice
    • Related Report
      2011 Final Research Report
  • [Presentation] イネ属AAゲノム種におけるPolA1遺伝子の分子進化2009

    • Author(s)
      真壁壮・高橋弘子・中村郁郎
    • Organizer
      育研11別1 : 72
    • Related Report
      2011 Final Research Report
  • [Book] Archaeological and Anthropological Sciences2010

    • Author(s)
      Hosoya, L.A., Y.-I. Sato & D
    • Total Pages
      2
    • Publisher
      The Archaeobotany of Early Rice Agriculture in Asia
    • Related Report
      2011 Final Research Report
  • [Book] イネの原産地と日本への伝播2010

    • Author(s)
      石川隆二
    • Total Pages
      8
    • Publisher
      食品と容器51
    • Related Report
      2010 Annual Research Report
  • [Book] 第3章「焼畑の生業サイクルと根栽類の貯蔵システム-パプアニューギニアの事例にみる「農耕社会」の多様性-」2009

    • Author(s)
      細谷葵
    • Publisher
      『ユーラシア農耕史4さまざまな栽培植物と農耕文化』(臨川書店)
    • Related Report
      2011 Final Research Report
  • [Remarks]

    • URL

      http://nature.cc.hirosaki-u.ac.jp/lab/1/plantbrd/genetics.html

    • Related Report
      2011 Final Research Report
  • [Remarks]

    • URL

      http://nature.cc.hirosaki-u.ac.jp/lab/1/plantbrd/genetics.html

    • Related Report
      2011 Annual Research Report
  • [Remarks]

    • URL

      http://nature.cc.hirosaki-u.ac.jp/lab/1/plantbrd/genetics.html

    • Related Report
      2009 Annual Research Report

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Published: 2009-04-01   Modified: 2016-04-21  

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