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Middleware of coupled simulations for distributed parallel environments

Research Project

Project/Area Number 21500038
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Software
Research InstitutionKyushu University

Principal Investigator

AOYAGI Mutsumi  九州大学, 情報基盤研究開発センター, 教授 (00260026)

Project Period (FY) 2009-04-01 – 2014-03-31
Project Status Completed (Fiscal Year 2013)
Budget Amount *help
¥4,550,000 (Direct Cost: ¥3,500,000、Indirect Cost: ¥1,050,000)
Fiscal Year 2013: ¥910,000 (Direct Cost: ¥700,000、Indirect Cost: ¥210,000)
Fiscal Year 2012: ¥910,000 (Direct Cost: ¥700,000、Indirect Cost: ¥210,000)
Fiscal Year 2011: ¥910,000 (Direct Cost: ¥700,000、Indirect Cost: ¥210,000)
Fiscal Year 2010: ¥910,000 (Direct Cost: ¥700,000、Indirect Cost: ¥210,000)
Fiscal Year 2009: ¥910,000 (Direct Cost: ¥700,000、Indirect Cost: ¥210,000)
Keywords連成計算 / ミドルウェア / 粒子計算 / 分子軌道法 / 並列計算 / 計算科学シミュレーション / 分子科学計算 / データ変換 / 粒子法 / 格子法 / QM法 / MM法 / 並列分散計算 / 連成シミュレーション / 通信ミドルウェア / 意味変換
Research Abstract

A middleware system called a Mediator ver.2(Med2) has been developed which provides high-level transparency in transferring and transforming data between heterogeneous application components. The Med2 focuses on a data-handling specification that correlates different discrete points in FDM, FEM, and particle simulations. It supports a variety of techniques for semantically transforming the physical values associated with the correlated points.
To facilitate easier usage and minimize customization of original programs, the Med2 provides two types of API, which (1) construct association between Med2 processes and application processes in SPMD and Master-Worker, (2) register different kinds of discrete points, search the correlated discrete points and determine processes with which communication is required. The prototype system has been applied to particle-mesh coupled simulation and OpenFMO program.

Report

(6 results)
  • 2013 Annual Research Report   Final Research Report ( PDF )
  • 2012 Annual Research Report
  • 2011 Annual Research Report
  • 2010 Annual Research Report
  • 2009 Annual Research Report
  • Research Products

    (34 results)

All 2013 2012 2011 2010 2009 Other

All Journal Article (17 results) (of which Peer Reviewed: 11 results) Presentation (11 results) (of which Invited: 1 results) Remarks (6 results)

  • [Journal Article] Molecular Cluster Assembly Method for Analysis of High-Dimensional Structures of p-Cresol Chains in Phenolic Polymers2013

    • Author(s)
      Shirun HO, Mutsumi Aoyagi
    • Journal Title

      Macromolecular Theory and Simulations

      Volume: vol.22 Pages: 443-461

    • Related Report
      2013 Final Research Report
  • [Journal Article] Numerical Study on Acoustic Oscillations of 2D and 3D Flue Organ Pipe Like Instruments with Compressible LES2013

    • Author(s)
      Masataka Miyamoto, Yasunori Ito, Takuya Iwasaki, Takahiro Akamura, Kinya Takahashi, Toshiya Takami, Taizo Kobayashi, Akira Nishida, Mutsumi Aoyagi
    • Journal Title

      Acta Acustica united with Acustica

      Volume: vol. 99 Pages: 154-171

    • NAID

      120005856407

    • Related Report
      2013 Final Research Report
  • [Journal Article] Numerical study on the function of tone holes of a recorder like instrument from the viewpoint of the aerodynamic sound theory2013

    • Author(s)
      Takuya. Iwasaki,, Taizo Kobayashi, Kinya Takahashi, Toshiya Takami, Akira Nishida, Mutsumi Aoyagi
    • Journal Title

      Proceedings of Meetings on Acoustics

      Volume: vol. 19

    • Related Report
      2013 Final Research Report
  • [Journal Article] 京コンピュータでの効率的な動作を目指した並列FMOプログラムOpenFMOの高性能化2013

    • Author(s)
      稲富雄一, 眞木淳, 本田宏明, 高見利也, 小林泰三, 青柳睦, 南一生
    • Journal Title

      Journal of Computer Chemistry, Japan

      Volume: Vol.12, No.2 Pages: 145-155

    • NAID

      130003362983

    • Related Report
      2013 Final Research Report
  • [Journal Article] Molecular-Cluster-Assembly Method for Analysis of High-Dimensional Structures of p-Cresol Chains in Phenolic Polymers2013

    • Author(s)
      Shirun Ho, Mutsumi Aoyagi
    • Journal Title

      Macromolecular Theory and Simulations

      Volume: 22 Issue: 9 Pages: 443-461

    • DOI

      10.1002/mats.201300101

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Numerical analysis of the interaction between fluid flow and acoustic field at the mouth-opening of a flue instrument2013

    • Author(s)
      T. Akamura, Y. Nagao, T. Iwasaki,, K. Nakano, K. Takahashi, T. Kobayashi, T. Takami, A. Nishida, M. Aoyagi
    • Journal Title

      Proceedings of Meetings on Acoustics

      Volume: 19 Pages: 35023-35023

    • DOI

      10.1121/1.4799957

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Numerical Study on Acoustic Oscillations of 2D and 3D Flue Organ Pipe Like Instruments with Compressible LES2013

    • Author(s)
      M. Miyamoto, Y. Ito, T. Iwasaki, T. Akamura, K. Takahashi, T. Takami, T. Kobayashi, A. Nishida, M. Aoyagi
    • Journal Title

      Acta Acustica united with Acustica

      Volume: 99 Issue: 1 Pages: 154-171

    • DOI

      10.3813/aaa.918599

    • NAID

      120005856407

    • Related Report
      2013 Annual Research Report 2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] NSIM : An Interconnection Network Simulator for Extreme-Scale Parallel Computers2011

    • Author(s)
      Hideki Miwa, Ryutaro Susukita, Hidetomo Shibamura, Tomoya Hirao, Jun Maki, Makoto Yoshida, Takayuki Kando, Yuichiro Ajima, Ikuo Miyoshi, Toshiyuki Shimizu, Yuji Oinaga, Hisashige Ando, Yuichi Inadomi, Koji Inoue, Mutsumi Aoyagi, Kazuaki Murakami
    • Journal Title

      IEICE Transactions

      Volume: vol. 94 Pages: 2298-2308

    • NAID

      10030537851

    • Related Report
      2013 Final Research Report
  • [Journal Article] Numerical study on air-reed instruments with LES2011

    • Author(s)
      Kinya Takahashi, Masataka Miyamoto, Yasunori Ito, Toshiya Takami, Taizo Kobayashi, Akira Nishida, Mutsumi Aoyagi
    • Journal Title

      ASME-JSME-KSME Fluids Engineering Conference 2011

      Volume: 07

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] NSIM : An Interconnection Network Simulator for Extreme-Scale Parallel Computers2011

    • Author(s)
      Hideki Miwa, Ryutaro Susukita, Hidetomo Shibamura, Tomoya Hirao, Jun Maki, Makoto Yoshida, Takayuki Kando, Yuichiro Ajima, Ikuo Miyoshi, Toshiyuki Shimizu, Yuji Oinaga, Hisashige Ando, Yuichi Inadomi, Koji Inoue, Mutsumi Aoyagi, Kazuaki Murakami
    • Journal Title

      IEICE Transactions.01/2011

      Volume: 94 Pages: 2298-2308

    • NAID

      10030537851

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Reproduction of Transitions among Notes on an Air-reed Musical Instrument with Compressible LES Combined with Moving Boundary Technique2011

    • Author(s)
      Yasunori Ito, Taizo Kobayashi, Kin'ya Takahashi, Toshiya Takami, Akira Nishida, Mutsumi Aoyagi
    • Journal Title

      Proceedings of Open Source CFD International Conference 2011.01/2011

      Volume: 2011

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] RPC/MPI Hybrid Implementation of Open FMO-All Electron Calculations of a Ribosome2010

    • Author(s)
      Yuichi. Inadomi, Toshiya Takami, Jun Maki, Taizo Kobayashi, Mutsumi Aoyagi
    • Journal Title

      Advances in Parallel Computing

      Volume: vol.19 Pages: 220-227

    • Related Report
      2013 Final Research Report
  • [Journal Article] Numerical analysis on 2D and 3D edge tones in terms of aerodynamic sound theory2010

    • Author(s)
      K.Takahashi, M.Miyamoto, Y.Ito, T.Takami, T.Kobayashi, A.Nishida, M.Aoyagi
    • Journal Title

      Proceedings of 20th International Congress on Acoustics (ICA 2010)

      Pages: 621-628

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Applicability of compressible LES to reproduction of sound vibration of an air-reed instrument2010

    • Author(s)
      M.Miyamoto, Y.Ito, K.Takahashi, T.Takami, T.Kobayashi, A.Nishida, M.Aoyagi
    • Journal Title

      Proceedings of 20th International Symposium on Music Acoustics (ISMA2010)

      Pages: 37-44

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] RPC/MPI Hybrid Implementation of OpenFMO-Al l Electron Calculations of a Ribosome2010

    • Author(s)
      Y.Inadomi, T.Takami, J.Maki, T.Kobayashi, M.Aoyagi
    • Journal Title

      Advances in Parallel Computing

      Volume: 19 Pages: 220-227

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 3D Calculation with Compressible LES for Sound Vibration of Ocarina'2009

    • Author(s)
      T.Kobayashi, T.Takami, M.Miyamoto, K.Takahashi, A.Nishida, M.Aoyagi
    • Journal Title

      Proceedings of Open Source CFD International Conference 2009 IV-B1

      Pages: 1-8

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] RPC/MPI Hybrid Implementation of OpenFMO2009

    • Author(s)
      Y.Inadomi, T.Takami, J.Maki, T.Kobayashi, M.Aoyagi
    • Journal Title

      Proceedings of International Conference on Parallel Computing(ParCo09) A-GC1

      Pages: 19-19

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Presentation] Effective techniques and crucial problems of numerical study on flue instruments2013

    • Author(s)
      Kin'ya Takahashi1, Takuya Iwasaki1, Takahiro Akamura1, Yuki Nagao, Ken'ichiro Nakano, Taizo Kobayashi, Toshiya Takami, Akira Nishida, Mutsumi Aoyagi
    • Organizer
      Proceedings of Meetings on Acoustics
    • Place of Presentation
      (Volume 19, pp. 35021-35029)
    • Related Report
      2013 Final Research Report
  • [Presentation] Effective techniques and crucial problems of numerical study on flue instruments2013

    • Author(s)
      K. Takahashi, T. Iwasaki,, T. Akamura, Y. Nagao, K. Nakano, T. Kobayashi, T. Takami, A. Nishida, M. Aoyagi
    • Organizer
      Proceedings of Meetings on Acoustics
    • Place of Presentation
      カナダ,モントリオール
    • Related Report
      2013 Annual Research Report
  • [Presentation] Interaction between compressible fluid and sound in a flue instrument2013

    • Author(s)
      T. Kobayashi
    • Organizer
      IUTAM2013
    • Place of Presentation
      Fukuoka, Japan
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] 粒子法による量子ダイナミクスの定式化と数値計算2012

    • Author(s)
      松野哲也, 高見利也, 大隈強志, 小林泰三, 青柳睦
    • Organizer
      第67回日本物理学会年次大会
    • Place of Presentation
      関西学院大学
    • Year and Date
      2012-03-24
    • Related Report
      2011 Annual Research Report
  • [Presentation] 分子動力学計算の時間方向並列化と通信パターン2012

    • Author(s)
      大隈強志, 高見利也, 松野哲也, 青柳睦
    • Organizer
      ハイパフォーマンスコンピューティングと計算科学シンポジウム(HPCS2012)
    • Place of Presentation
      名古屋大学
    • Related Report
      2011 Annual Research Report
  • [Presentation] 流体音に於ける移動境界問題:音源としての移動境界2011

    • Author(s)
      小林泰三, 伊藤泰典, 高見利也, 宮本真孝, 高橋公也, 西田晃, 青柳睦
    • Organizer
      日本物理学会2011年秋の分科会
    • Place of Presentation
      富山大学
    • Year and Date
      2011-09-22
    • Related Report
      2011 Annual Research Report
  • [Presentation] Numerical study on air-reed instruments with LES2011

    • Author(s)
      Kin'ya Takahashi, Masataka Miyamoto, Yasunori Ito, Toshiya Takami, Taizo Kobayashi, Akira Nishida, Mutsumi Aoyagi
    • Organizer
      ASME-JSME-KSME Fluids Engineering Conference 2011 (AJK2011)
    • Related Report
      2013 Final Research Report
  • [Presentation] Reproduction of Transitions among Notes on an Air-reed Musical Instrument with Compressible LES Combined with Moving Boundary Technique2011

    • Author(s)
      Yasunori Ito, Taizo Kobayashi, Kin'ya Takahashi, Toshiya Takami, Akira Nishida, Mutsumi Aoyagi
    • Organizer
      Proceedings of Open Source CFD International Conference 2011
    • Related Report
      2013 Final Research Report
  • [Presentation] Applicability of compressible LES to reproduction of sound vibration of an air-reed instrument2010

    • Author(s)
      M. Miyamoto, Y. Ito, K. Takahashi, T. Takami, T Kobayashi, A. Nishida, M. Aoyagi
    • Organizer
      Prodeedings of 20th International Symposium on Music Acoustics (ISMA2010)
    • Related Report
      2013 Final Research Report
  • [Presentation] 圧縮性LESを用いた小型エアリード楽器の数値解析2009

    • Author(s)
      宮本真孝, 高見利也, 小林泰三, 西田晃, 青柳睦, 高橋公也
    • Organizer
      日本物理学会 秋の分科会
    • Place of Presentation
      熊本大学
    • Year and Date
      2009-09-26
    • Related Report
      2009 Annual Research Report
  • [Presentation] RPC/MPI Hybrid Implementation of OpenFMO

    • Author(s)
      Y. Inadomi , T. Takami, J. Maki, T. Kobayashi, M. Aoyagi
    • Organizer
      International Conference on Parallel Computing (ParCo09)
    • Related Report
      2013 Final Research Report
  • [Remarks]

    • Related Report
      2013 Final Research Report
  • [Remarks] 研究紹介

    • Related Report
      2013 Annual Research Report
  • [Remarks] 研究紹介

    • URL

      http://server-500.cc.kyushu-u.ac.jp/

    • Related Report
      2012 Annual Research Report
  • [Remarks]

    • URL

      http://server-500.cc.kyushu-u.ac.jp/

    • Related Report
      2011 Annual Research Report
  • [Remarks]

    • URL

      http://server-500.cc.kyushu-u.ac.jp/

    • Related Report
      2010 Annual Research Report
  • [Remarks]

    • URL

      http://server-500.cc.kyushu-u.ac.jp/

    • Related Report
      2009 Annual Research Report

URL: 

Published: 2009-04-01   Modified: 2019-07-29  

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