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Developing three dimensional visualization algorithms for biological researches

Research Project

Project/Area Number 21500099
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Media informatics/Database
Research InstitutionOsaka University

Principal Investigator

WADA Masaaki  大阪大学, 大学院・情報科学研究科, 教授 (80192821)

Project Period (FY) 2009 – 2012
Project Status Completed (Fiscal Year 2012)
Budget Amount *help
¥2,990,000 (Direct Cost: ¥2,300,000、Indirect Cost: ¥690,000)
Fiscal Year 2012: ¥520,000 (Direct Cost: ¥400,000、Indirect Cost: ¥120,000)
Fiscal Year 2011: ¥520,000 (Direct Cost: ¥400,000、Indirect Cost: ¥120,000)
Fiscal Year 2010: ¥520,000 (Direct Cost: ¥400,000、Indirect Cost: ¥120,000)
Fiscal Year 2009: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Keywords可視化 / アルゴリズム / 画像処理
Research Abstract

We have developed an algorithm for computing the area and the volume of biological objects in raster images such as those obtained by confocal laser scanning microscopy, CT and MRI. The algorithm is robust to noise, and possesses desirable properties like congruence invariance, linear invariance and trimming invariance.We have applied the algorithm to confocal laser scanning microscopy images of a fluorescent bead with photomultiplier sensitivity of 5%, 10%, 20%, 40%, 60%, 80%, and the standard deviation of the computed areas was only 0.26%.

Report

(5 results)
  • 2012 Annual Research Report   Final Research Report ( PDF )
  • 2011 Annual Research Report
  • 2010 Annual Research Report
  • 2009 Annual Research Report
  • Research Products

    (18 results)

All 2012 2011 2009 Other

All Journal Article (2 results) (of which Peer Reviewed: 1 results) Presentation (11 results) Remarks (5 results)

  • [Journal Article] Erratum to the article Twisted Alexander polynomials and surjectivity of a group homomorphism2011

    • Author(s)
      T.Kitano, M.Suzuki, M.Wada
    • Journal Title

      Algebraic & Geometric Topology

      Volume: 11 Issue: 5 Pages: 2937-2939

    • DOI

      10.2140/agt.2011.11.2937

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Twisted Alexander polynomial revisited2011

    • Author(s)
      M.Wada
    • Journal Title

      数理解析研究所講究録

      Volume: 1747 Pages: 140-144

    • Related Report
      2011 Annual Research Report
  • [Presentation] 放物型Cantor集合のコーディングとHausdorff次元2012

    • Author(s)
      和田昌昭
    • Organizer
      クライン群とコンピュータ・グラフィックス
    • Place of Presentation
      名古屋大学多元数理科学研究科
    • Year and Date
      2012-03-05
    • Related Report
      2011 Annual Research Report
  • [Presentation] Visualizing once-punctured torus groups2011

    • Author(s)
      M.Wada
    • Organizer
      Introduction of the graduateschool of Information Science and Technology
    • Place of Presentation
      East China Normal University (China)
    • Year and Date
      2011-12-09
    • Related Report
      2011 Annual Research Report
  • [Presentation] 細胞内物質の体積計測のための閾値自動決定アルゴリズム2009

    • Author(s)
      和田昌昭, 秋山寛子
    • Organizer
      細胞内ロジスティクス班会議
    • Place of Presentation
      ANAインターコンチネンタル万座ビーチリゾート (沖縄県)
    • Year and Date
      2009-11-10
    • Related Report
      2009 Annual Research Report
  • [Presentation] 三次元立体構成プログラム(Delta Viewer)の実際2009

    • Author(s)
      和田昌昭
    • Organizer
      神経科学セミナー
    • Place of Presentation
      東京都神経科学総合研究所
    • Year and Date
      2009-09-07
    • Related Report
      2012 Final Research Report
  • [Presentation] 3次元構築アプリケーションにおける3D表示 (2)2009

    • Author(s)
      鬼束未希, 和田昌昭
    • Organizer
      第18回日本バイオイメージング学会学術集会
    • Place of Presentation
      就実大学 (岡山県)
    • Year and Date
      2009-09-03
    • Related Report
      2009 Annual Research Report
  • [Presentation] Windows 用3次元立体構築アプリケーションにおけるobjファイル変換機能2009

    • Author(s)
      牛尾奈々子, 和田畠昭
    • Organizer
      第18回日本バイオイメージング学会学術集会
    • Place of Presentation
      就実大学 (岡山県)
    • Year and Date
      2009-09-03
    • Related Report
      2009 Annual Research Report
  • [Presentation] ラスター画像から面積を求めるための閾値自動決定アルゴリズム2009

    • Author(s)
      秋山寛子, 和田昌昭
    • Organizer
      第18回日本バイオイメージング学会学術集会
    • Place of Presentation
      就実大学 (岡山県)
    • Year and Date
      2009-09-03
    • Related Report
      2009 Annual Research Report
  • [Presentation] 3次元構築アプリケーションにおける3D表示(2)2009

    • Author(s)
      鬼束未希,和田昌昭
    • Organizer
      第18回日本バイオイメージング学会学術集会
    • Place of Presentation
      就実大学
    • Related Report
      2012 Final Research Report
  • [Presentation] Windows用3次元立体構築アプリケーションにおけるobjファイル変換機能2009

    • Author(s)
      牛尾奈々子,和田昌昭
    • Organizer
      第18回日本バイオイメージング学会学術集会
    • Place of Presentation
      就実大学
    • Related Report
      2012 Final Research Report
  • [Presentation] ラスター画像から面積を求めるための閾値自動決定アルゴリズム2009

    • Author(s)
      秋山寛子,和田昌昭
    • Organizer
      第18回日本バイオイメージング学会学術集会
    • Place of Presentation
      就実大学
    • Related Report
      2012 Final Research Report
  • [Presentation] 細胞内物質の体積計測のための閾値自動決定アルゴリズム2009

    • Author(s)
      和田昌昭,秋山寛子
    • Organizer
      細胞内ロジスティクス班会議
    • Place of Presentation
      沖縄ANAインターコンチネンタル万座ビーチリゾート会議場
    • Related Report
      2012 Final Research Report
  • [Remarks] DeltaViewer Project

    • URL

      http://delta.math.sci.osaka-u.ac.jp/DeltaViewer/index-j.html

    • Related Report
      2012 Final Research Report
  • [Remarks] DeltaViewer Project

    • URL

      http://delta.math.sci.osaka-u.ac.jp/DeltaViewer/index-j.html

    • Related Report
      2012 Annual Research Report
  • [Remarks]

    • URL

      http://delta.math.sci.osaka-u.ac.jp/DeltaViewer/index-j.html

    • Related Report
      2011 Annual Research Report
  • [Remarks]

    • URL

      http://delta.math.sci.osaka-u.ac.jp/DeltaViewer/index-j.html

    • Related Report
      2010 Annual Research Report
  • [Remarks]

    • URL

      http://delta.math.sci.osaka-u.ac.jp/DeltaViewer/index-j.html

    • Related Report
      2009 Annual Research Report

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Published: 2009-04-01   Modified: 2019-07-29  

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