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Role of histone modifications on establishing DNA methylation patterns

Research Project

Project/Area Number 21570136
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Functional biochemistry
Research InstitutionOsaka University

Principal Investigator

SUETAKE Isao  大阪大学, 蛋白質研究所, 准教授 (80304054)

Project Period (FY) 2009 – 2011
Project Status Completed (Fiscal Year 2011)
Budget Amount *help
¥4,940,000 (Direct Cost: ¥3,800,000、Indirect Cost: ¥1,140,000)
Fiscal Year 2011: ¥1,040,000 (Direct Cost: ¥800,000、Indirect Cost: ¥240,000)
Fiscal Year 2010: ¥1,040,000 (Direct Cost: ¥800,000、Indirect Cost: ¥240,000)
Fiscal Year 2009: ¥2,860,000 (Direct Cost: ¥2,200,000、Indirect Cost: ¥660,000)
KeywordsDNAメチル化 / ヒストン / ヘテロクロマチン蛋白質 / Dnmt
Research Abstract

Dnmt3a creates DNA methylation patterns. Dnmt3a2, an isoform of Dnmt3a, lacks amino-terminal 219 amino acids of Dnmt3a and is highly expressed in germ cells and early embryo. We found that the amino-terminal 219 amino acids shows DNA binding activity and contributes for its localization and for DNA methylation activity. On the other hands, DNA methylation pattern once created is maintained by Dnmt1. We solved crystal structure of mouse Dnmt1(291-1602 amino acids) at 1. 3 A resolution. Notably, in the absence of DNA, the amino-terminal domain responsible for targeting Dnmt1 to replication foci is inserted into the DNA-binding pocket, indicating that this domain must be removed during methylation reaction.

Report

(4 results)
  • 2011 Annual Research Report   Final Research Report ( PDF )
  • 2010 Annual Research Report
  • 2009 Annual Research Report
  • Research Products

    (41 results)

All 2012 2011 2010 2009

All Journal Article (14 results) (of which Peer Reviewed: 13 results) Presentation (27 results)

  • [Journal Article] The Dnmt3b Splice Variant is Specifically Expressed in In Vitro-manipulated Blastocysts and Their Derivative ES Cells2011

    • Author(s)
      Horii T, Suetake I, Yanagisawa E, Morita S, Kimura M, Nagao Y, Imai H, Tajima S, and Hatada I
    • Journal Title

      Journal of Reproduction and Development

      Volume: 57 Issue: 5 Pages: 579-585

    • DOI

      10.1262/jrd.10-194A

    • NAID

      10029878177

    • ISSN
      0916-8818, 1348-4400
    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Characterization of DNA-binding activity in the N-terminal domain of DNA methyltransferase Dnmt3a2011

    • Author(s)
      Suetake I, Mishima Y, Kimura H, Lee Y, Goto Y, Takeshima H, Ikegami T, and Tajima S
    • Journal Title

      Biochem. J

      Volume: 437 Pages: 141-148

    • Related Report
      2011 Final Research Report
  • [Journal Article] Structual insight into maintenance methylation by mouse DNA methyltransferase(Dnmt1)2011

    • Author(s)
      Takeshita K, Suetake I, Yamashita E, Suga M, Narita H, Nakagawa A, and Tajima S
    • Journal Title

      PNAS

      Volume: 108 Issue: 22 Pages: 9055-9059

    • DOI

      10.1073/pnas.1019629108

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] tructual insight into maintenance methylation by mouse DNA methyltransferase (Dnmt1)2011

    • Author(s)
      Takeshita K, Suetake I, Yamashita E, Suga M, Narita H, Nakagawa A, Tajima S
    • Journal Title

      PNAS

      Volume: 108 Pages: 9055-9059

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Characterization of DNA-binding activity in the N-terminal domain of DNA methyltransferase Dnmt3a2011

    • Author(s)
      Suetake I, Mishima Y, Kimura H, Lee Y, Goto Y, Takeshima H, Ikegami T, Tajima S
    • Journal Title

      Biochem.J.

      Volume: 437 Pages: 141-148

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] The Dnmt3b Splice Variant is Specifically Expressed in In Vitro-mani pulated Blastocysts and Their Derivative ES Cells2011

    • Author(s)
      Horii T, Suetake I, Yanagisawa E, Morita S, Kimura M, Nagao Y, Imai H, Tajima S, Hatada I
    • Journal Title

      J.Reprod.Dev.

      Volume: 57 Pages: 579-585

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Recombinant mammalian DNA methyltransferase activity on model transcriptional gene silencing short RNA : DNA hybrid substrates2010

    • Author(s)
      Ross J, Suetake I, Tajima S, and Molloy PL
    • Journal Title

      Biochem. J

      Volume: 432 Issue: 2 Pages: 323-332

    • DOI

      10.1042/bj20100579

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Array-based genomic resequencing of human leukemia2010

    • Author(s)
      Yamashita Y, Yuan J, Suetake I, Suzuki H, Ishikawa Y, Choi Y L, Ueno T, Soda M, Hamada T, Haruta H, Takada S, Miyazaki Y, Kiyoi H, Ito E, Naoe T, Tomonaga M, Toyota M, Tajima S, Iwama A, and Mano H
    • Journal Title

      Oncogene

      Volume: 29 Issue: 25 Pages: 3723-3731

    • DOI

      10.1038/onc.2010.117

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] The DNA-binding activity of mouse DNA methyltransferase 1 is regulated by phosphorylation with casein kinase 1delta/ epsilon2010

    • Author(s)
      Sugiyama Y, Hatano N, Sueyoshi N, Suetake I, Tajima S, Kinoshita E, Kinoshita-Kikuta E, Koike T, and Kameshita I
    • Journal Title

      Biochem J

      Volume: 427 Issue: 3 Pages: 489-497

    • DOI

      10.1042/bj20091856

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Recombinant mammalian DNA methyltransferase activity on model transcriptional gene silencing short RNA : DNA hybrid substrates2010

    • Author(s)
      Ross J, et al.
    • Journal Title

      Biochem.J.

      Volume: 432 Pages: 323-332

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Array-based genomic resequencing of human leukemia.2010

    • Author(s)
      Yamashita Y, et al.
    • Journal Title

      Oncogene

      Volume: 29 Pages: 3723-3731

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] The DNA-binding activity of mouse DNA methyltransferase 1 is regulated by phosphorylation with casein kinase 1 delta/epsilon.2010

    • Author(s)
      Sugiyama Y, et al.
    • Journal Title

      Biochem.J.

      Volume: 427 Pages: 489-497

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] The DNA-binding activity of mouse DNA methyltransferase 1 is regulated by phosphorylation with casein kinase 1delta/epsilon2010

    • Author(s)
      Sugiyama Y, et al.
    • Journal Title

      Biochem J. (In press)

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Array-based genomic resequencing of human leukemia2010

    • Author(s)
      Yamashita Y, et al.
    • Journal Title

      Oncogene (In press)

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Presentation] Dnmt1によるDNA維持メチル化のin vivoにおける責任領域2012

    • Author(s)
      長谷川貴志、木村博信、末武勲、武藤正弘、ジャファルシャリフ、古関明彦、田嶋正二
    • Organizer
      第6回日本エピジェネティクス研究会年会
    • Place of Presentation
      学術総合センター
    • Related Report
      2011 Final Research Report
  • [Presentation] ポリコーム群蛋白質複合体(PRC2)によるヒストンH3K27メチル化活性-Suz12の責任領域-2012

    • Author(s)
      三島優一、磯野協一、古関明彦、田嶋正二、末武勲
    • Organizer
      第6回日本エピジェネティクス研究会年会
    • Place of Presentation
      学術総合センター
    • Related Report
      2011 Final Research Report
  • [Presentation] Dnmt1によるDNA維持メチル化活性は領域の大きな再配置を伴う反応である2012

    • Author(s)
      末武勲、中村達郎、ベルキュレクアハメトジャン、竹下浩平、中川敦史、田嶋正二
    • Organizer
      第6回日本エピジェネティクス研究会年会
    • Place of Presentation
      学術総合センター
    • Related Report
      2011 Final Research Report
  • [Presentation] 海洋無脊椎動物からのDnmt1阻害剤の探索2012

    • Author(s)
      石上進太郎、末武勲、田嶋正二、中尾洋一
    • Organizer
      第6回日本エピジェネティクス研究会年会
    • Place of Presentation
      学術総合センター
    • Related Report
      2011 Final Research Report
  • [Presentation] Inhibitory effect of chromo shadow domain of heteromchromatin protein 1γ (HP1γ) on its recognition of the trimethlyated lysine 9 of histone H3 in nucleosome structure2011

    • Author(s)
      Chanika Jayasinghe, Yuichi Mishima, Junji Otani, Yusuke Kikugawa, Masahiro Shirakawa, Shoji Tajima, Isao Suetake
    • Organizer
      第5回エピジェネティクス年会
    • Place of Presentation
      KKR熊本
    • Year and Date
      2011-05-19
    • Related Report
      2011 Annual Research Report
  • [Presentation] X線結晶構造から見るDnmt1のエピジェネティックマーク継承のメカニズム2011

    • Author(s)
      竹下浩平、末武勲、山下栄樹、菅倫寛、成田宏隆、中川敦史、田嶋正二
    • Organizer
      第49回生物物理学会年会
    • Place of Presentation
      兵庫県立大学書写キャンパス
    • Related Report
      2011 Final Research Report
  • [Presentation] Dnmt1によるメチル化模様維持機構に関する構造生物学的研究2011

    • Author(s)
      竹下浩平、末武勲、山下栄樹、菅倫寛、成田宏隆、中川敦史、田嶋正二
    • Organizer
      第11回日本蛋白質科学会年会
    • Place of Presentation
      ホテル阪急エキスポパーク
    • Related Report
      2011 Final Research Report
  • [Presentation] X線結晶構造から考察するDnmt1による維持メチル化機構2011

    • Author(s)
      竹下浩平、末武勲、山下栄樹、菅倫寛、成田宏隆、中川敦史、田嶋正二
    • Organizer
      第5回日本エピジェネティクス研究会年会
    • Place of Presentation
      KKR熊本
    • Related Report
      2011 Final Research Report
  • [Presentation] Structural insight into maintenance methylation by mouse DNA methyltransferase 12011

    • Author(s)
      Takeshita, K., Suetake, I., Yamashita, E., Suga, M., Narita, H., Nakagawa, A., Tajima, S.
    • Organizer
      International Union of Crystallography(IUCr)
    • Place of Presentation
      Madrid Spain
    • Related Report
      2011 Final Research Report
  • [Presentation] 再構成ヌクレオソームに対するヘテロクロマチン蛋白質1の結合様式2011

    • Author(s)
      三島優一、Chanika D Jayasinge、川上徹、大谷淳二、菊川雄介、白川昌宏、木村宏、相本三郎、田嶋正二、末武勲
    • Organizer
      第5回エピジェネティクス年会
    • Place of Presentation
      KKR熊本
    • Related Report
      2011 Annual Research Report 2011 Final Research Report
  • [Presentation] Inhibitory effect of chromo shadow domain of heteromchromatin protein 1γ(HP1γ) on its recognition of the trimethlyated lysine 9 of histone H3 in nucleosome structure2011

    • Author(s)
      Chanika Jayasinghe, Yuichi Mishima, Junji Otani, Yusuke Kikugawa, Masahiro Shirakawa, Shoji Tajima, and Isao Suetake
    • Organizer
      第5回エピジェネティクス年会
    • Place of Presentation
      KKR熊本
    • Related Report
      2011 Final Research Report
  • [Presentation] X線結晶構造から考察するDnmt1による維持メチル化機構2011

    • Author(s)
      竹下浩平、末武勲、山下永樹、菅倫寛、成田宏隆、中川敦史、田嶋正二
    • Organizer
      第5回エピジェネティクス年会
    • Place of Presentation
      KKR熊本
    • Related Report
      2011 Final Research Report
  • [Presentation] Denovo型DNAメチル化酵素Dnmt3a2とコリプレッサー蛋白質Trim28の結合様式の検討2011

    • Author(s)
      木村博信、末武勲、田嶋正二
    • Organizer
      第5回エピジェネティクス年会
    • Place of Presentation
      KKR熊本
    • Related Report
      2011 Final Research Report
  • [Presentation] Dnmt1とNp95/ Uhrf1の機能的相互作用、ベルキュレクアハマトジャン2011

    • Author(s)
      竹谷和博、西尾チカ、末武勲、田嶋正二
    • Organizer
      第5回エピジェネティクス年会
    • Place of Presentation
      KKR熊本
    • Related Report
      2011 Final Research Report
  • [Presentation] Dnmt1の活性にはたす複製フォーク標的化シグナル(RFTS)の役割2011

    • Author(s)
      中村達郎、末武勲、田嶋正二
    • Organizer
      第5回エピジェネティクス年会
    • Place of Presentation
      KKR熊本
    • Related Report
      2011 Final Research Report
  • [Presentation] メチル化CpG結合蛋白質MBD4によるDNA認識の構造的基盤2011

    • Author(s)
      大谷淳二、有田恭平、有吉眞理子、木村博信、末武勲、田嶋正二、白川昌宏
    • Organizer
      第5回エピジェネティクス年会
    • Place of Presentation
      KKR熊本
    • Related Report
      2011 Final Research Report
  • [Presentation] Histone H3K9 trimetylation stimulates the histone H3K27methylation activity of PRC2 bypassing Eed2010

    • Author(s)
      三島優一, et al.
    • Organizer
      Keystone symposium
    • Place of Presentation
      Taos, New Mexico
    • Year and Date
      2010-01-20
    • Related Report
      2009 Annual Research Report
  • [Presentation] Binding specificities of heterochromatin protein 1a, b, and g to the reconstituted nucleosomes containing tri-methylated lysine 9 histone H32010

    • Author(s)
      Yuichi Mishima, Makoto Watanabe, Toru Kawakami, Yuko Aoki, Hiroshi Kimura, Saburo Aimoto, Osamu Nishimura, Shoji Tajima, Isao Sueta
    • Organizer
      JSPS Sweden-Japan joint colloquium" epigenetics. new horizon in Japan and Scandinavia"
    • Place of Presentation
      nobel forum, karolonska institute, Stockholm
    • Related Report
      2011 Final Research Report
  • [Presentation] トリメチル化リシン9をもつ再構成ヌクレオソームに対するheterochromatin protein 1の特異的な結合様式2010

    • Author(s)
      三島優一、渡辺真、川上徹、青木優子、木村宏、相本三郎、西村紀、田嶋正二、末武勲
    • Organizer
      第4回エピジェネティクス研究会
    • Place of Presentation
      米子市文化ホール
    • Related Report
      2011 Final Research Report
  • [Presentation] Histone H3K9 trimethylation stimulates the histone H3K27 methylation activity of PRC2 bypassing Eed2010

    • Author(s)
      I Suetake ; S Aimoto ; Y Aoki ; K Isano ; T Kawakami ; H Kimura ; H Koseki ; Y Mishima ; O Nishimura ; S Tajima ; M Watanabe
    • Organizer
      Keystone symposium
    • Place of Presentation
      Sagebrush Inn and Conference Center, Taos, New Mexico
    • Related Report
      2011 Final Research Report
  • [Presentation] Binding specificities of heterochromatin protein 1a, b, and g to the reconstituted nucleosomes containing tri-methylated lysine qhistone H32010

    • Author(s)
      Mishima Y, et al.
    • Organizer
      JSPS Sweden-Japan joint colloquium
    • Place of Presentation
      Nobel forum, Stockholm(スウェーデン)
    • Related Report
      2010 Annual Research Report
  • [Presentation] 体外培養したマウス着床前胚特異的に発現するDnmt3bスプライシングバリアント2009

    • Author(s)
      堀居拓郎, 他
    • Organizer
      第32回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜
    • Year and Date
      2009-12-09
    • Related Report
      2009 Annual Research Report
  • [Presentation] Specific interaction between Np95/Uhrf1 and Dnmt1 is responsible for postreplicative maintenance of the DNA methylation patterns2009

    • Author(s)
      武藤正弘, 他
    • Organizer
      第32回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜
    • Year and Date
      2009-12-09
    • Related Report
      2009 Annual Research Report
  • [Presentation] ポリコーム群蛋白質複合体PRC2によるH3K27メチル化の新たな活性調節機構2009

    • Author(s)
      三島優一, 他
    • Organizer
      第82回 日本生化学学会
    • Place of Presentation
      神戸ポートアイランド
    • Year and Date
      2009-10-23
    • Related Report
      2009 Annual Research Report
  • [Presentation] マウスDNAメチルトランスフェラーゼ1のDNA結合活性は、カゼインキナーゼ1によるリン酸化によって制御される2009

    • Author(s)
      杉山康憲, 他
    • Organizer
      第82回 日本生化学学会
    • Place of Presentation
      神戸ポートアイランド
    • Year and Date
      2009-10-23
    • Related Report
      2009 Annual Research Report
  • [Presentation] ポリコーム群蛋白質複合体PRC2によるヒストンH3メチル化活性に対する、ヒストンH3の9番目のリシン残基のトリメチル化修飾の影響2009

    • Author(s)
      三島優一, 他
    • Organizer
      第3回日本エピジェネティクス研究会年会
    • Place of Presentation
      東京 (学術総合センター)
    • Year and Date
      2009-05-22
    • Related Report
      2009 Annual Research Report
  • [Presentation] ポリコーム群蛋白質複合体PRC2によるヒストンH3メチル化活性に対する、ヒストンH3の9番目のリシン残基のトリメチル化修飾の影響2009

    • Author(s)
      三島優一、田嶋正二、末武勲
    • Organizer
      第3回日本エピジェネティクス研究会年会
    • Place of Presentation
      学術総合センター
    • Related Report
      2011 Final Research Report

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Published: 2009-04-01   Modified: 2016-04-21  

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