• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to previous page

Studies on the molecular mechanism of sphingolipid metabolism based on the crystal structure of the enzymes

Research Project

Project/Area Number 21570149
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Functional biochemistry
Research InstitutionOsaka Medical College

Principal Investigator

IKUSHIRO Hiroko  大阪医科大学, 医学部, 講師 (10280702)

Co-Investigator(Renkei-kenkyūsha) HAYASHI Hideyuki  大阪医科大学, 医学部, 教授 (00183913)
Project Period (FY) 2009 – 2011
Project Status Completed (Fiscal Year 2011)
Budget Amount *help
¥4,680,000 (Direct Cost: ¥3,600,000、Indirect Cost: ¥1,080,000)
Fiscal Year 2011: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2010: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2009: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Keywords酵素の触媒機構 / タンパク質 / スフィンゴ脂質 / セリンパルミトイル転移酵素 / スフィンゴシン1-リン酸リアーゼ / 酵素反応 / 生体分子 / 微生物 / スフィンゴシン1-リン酸
Research Abstract

The crystal structural of serine palmitoyltransferase complexed with L-serine was determined. The multifunctional role of the catalytic residue, histidine, in the reaction mechanism was experimentally proposed by the analyses of the mutant SPTs, as follows ; The histidine residue fixes the conformation of both of L-serine and reaction product preventing the unfavorable side reactions, and enhances the Claisen-type condensation and decarboxylation by its function as an acid catalyst. Sphingosine 1-phosphate was overproduced successfully in E. coli. Assay system using the purified recombinant enzyme and fluorescent labeled-substrate was developed and enzymatic property was analyzed in detail. Sphingosine 1-phosphate was also crystallized with good reproducibility.

Report

(4 results)
  • 2011 Annual Research Report   Final Research Report ( PDF )
  • 2010 Annual Research Report
  • 2009 Annual Research Report
  • Research Products

    (43 results)

All 2011 2010 2009 Other

All Journal Article (13 results) (of which Peer Reviewed: 13 results) Presentation (24 results) Book (3 results) Remarks (3 results)

  • [Journal Article] Mechanistic enzymology of serine palmitoyltransferase2011

    • Author(s)
      Ikushiro, H., Hayashi, H.
    • Journal Title

      Biochim Biophys Acta.

      Volume: Vol.1814, No.11 Pages: 1474-1480

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Role of a conserved arginine residue during catalysis in serine palmitoyltransferase.2011

    • Author(s)
      Lowther, J, Charmier, G., Raman, M. C., Ikushiro, H., Hayashi, H., Campopiano, D. J.
    • Journal Title

      FEBS Lett.

      Volume: Vol.585, No.12 Pages: 1729-1734

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] 細菌セリンパルミトイル転移酵素の構造と触媒機構解析2011

    • Author(s)
      生城浩子, 林秀行
    • Journal Title

      生化学

      Volume: 83巻, 2号 Pages: 105-110

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] セリンパルミトイル転移酵素の触媒反応におけるHis159の多機能的役割2011

    • Author(s)
      生城浩子, 白岩有桂, 林秀行
    • Journal Title

      ビタミン

      Volume: 84巻, 9号 Pages: 423-431

    • NAID

      110007730458

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Role of a conserved arginine residue during catalysis in serine palmitoyltransferase2011

    • Author(s)
      Hideyuki Hayashi
    • Journal Title

      FEBS Lett.

      Volume: 585 Issue: 12 Pages: 1729-1734

    • DOI

      10.1016/j.febslet.2011.04.013

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Mechanistic enzymology of serine palmitoyltransferase2011

    • Author(s)
      Hiroko Ikushiro
    • Journal Title

      Biochimica et Biophysica Acta

      Volume: 1824 Issue: 11 Pages: 1474-1480

    • DOI

      10.1016/j.bbapap.2011.02.005

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Role of a conserved arginine residue during catalysis in serine palmitoyltyl ransferase2011

    • Author(s)
      Jonathan Lowther
    • Journal Title

      FEBS Letter

      Volume: (in press)

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Mechanistic enzymology of serine palmitoyltransferase2011

    • Author(s)
      Hiroko Ikushiro
    • Journal Title

      Biochim Biophys Acta

      Volume: (in press)

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Structural and kinetic study on bacterial serine palmitoyltransferase.2011

    • Author(s)
      Hiroko Ikushiro
    • Journal Title

      Seikagaku.

      Volume: 83 Pages: 105-110

    • NAID

      10029067487

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Structural insights into the enzymatic mechanism of serine palmitoyltransferase from Sphingobacterium multivorum.2009

    • Author(s)
      Ikushiro, H., Islam, M. M., Okamoto, A., Hoseki, J., Murakawa, T., Fujii, S., Miyahara, I., Hayashi, H.
    • Journal Title

      J. Biochem.

      Volume: Vol.146, No.4 Pages: 549-562

    • NAID

      10026304060

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Multifunctional role of His159in the catalytic reaction of serine palmitoyltransferase.2009

    • Author(s)
      Shiraiwa, Y., Ikushiro, H., Hayashi, H.
    • Journal Title

      J. Biol. Chem.

      Volume: Vol.284, No.23 Pages: 15487-15495

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Multifunctional role of His159 in the catalytic reaction of serine palmitoyltransferase2009

    • Author(s)
      Yuka Shiraiwa
    • Journal Title

      Journal of Biological Chemistry 284

      Pages: 15487-15495

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Structural insights into the enzymatic mechanism of serine palmitoyltransferase from Sphingobacterium multivorum2009

    • Author(s)
      Hiroko Ikushiro
    • Journal Title

      Journal of Biochemistry 146

      Pages: 549-562

    • NAID

      10026304060

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Presentation] セリンヒドロキシメチル基転移酵素の複合体結晶構造2011

    • Author(s)
      宮原郁子
    • Organizer
      日本結晶学会年会
    • Place of Presentation
      北海道大学(北海道札幌市)
    • Year and Date
      2011-11-25
    • Related Report
      2011 Final Research Report
  • [Presentation] セリンヒドロキシメチル基転移酵素の複合体結晶構造2011

    • Author(s)
      宮原郁子
    • Organizer
      日本結晶学会年会
    • Place of Presentation
      北海道札幌市北海道大学
    • Year and Date
      2011-11-25
    • Related Report
      2011 Annual Research Report
  • [Presentation] 好熱性共生細菌Symbiobacterium thermophilumスフィンゴシン1-リン酸リアーゼの酵素化学的解析2011

    • Author(s)
      生城浩子
    • Organizer
      第84回日本生化学会大会
    • Place of Presentation
      京都国際会館
    • Year and Date
      2011-09-23
    • Related Report
      2011 Annual Research Report 2011 Final Research Report
  • [Presentation] セリンヒドロキシメチル基転移酵素の基質認識2011

    • Author(s)
      湯川直樹
    • Organizer
      第84回日本生化学会大会
    • Place of Presentation
      京都国際会館
    • Year and Date
      2011-09-23
    • Related Report
      2011 Annual Research Report 2011 Final Research Report
  • [Presentation] Atomic Resolution Crystal Structures of Serine Hydroxymethyltransferase with Substrate Analogue2011

    • Author(s)
      宮原郁子
    • Organizer
      The 3rd International Conference on Cofactors(ICC-03)
    • Place of Presentation
      University of Turku(Turku, Finland)
    • Year and Date
      2011-07-11
    • Related Report
      2011 Final Research Report
  • [Presentation] Enzymatic Characterization of Sphingosine-1-phosphate Lyase from Obligately Symbiotic Thermophile Bacterium Symbiobacterium thermophilum2011

    • Author(s)
      生城浩子
    • Organizer
      The 3rd International Conference on Cofactors(ICC-03)
    • Place of Presentation
      University of Turku(Turku, Finland)
    • Year and Date
      2011-07-11
    • Related Report
      2011 Final Research Report
  • [Presentation] Enzymatic Characterization of Sphingosine-1-phosphate Lyase from Obligately Symbiotic Thermophile Bacterium Symbiobacterium thermophilum2011

    • Author(s)
      Hiroko Ikushiro(生城浩子)
    • Organizer
      The 3rd International Conference on Cofactors (ICC-03)
    • Place of Presentation
      University of Turku, Turku, Finland
    • Year and Date
      2011-07-11
    • Related Report
      2011 Annual Research Report
  • [Presentation] Atomic Resolution Crystal Structures of Serine Hydroxymethyltransferase with Substrate Analogue2011

    • Author(s)
      Ikuko Miyahara(宮原郁子)
    • Organizer
      The 3rd International Conference on Cofactors (ICC-03)
    • Place of Presentation
      University of Turku, Turku, Finland
    • Year and Date
      2011-07-11
    • Related Report
      2011 Annual Research Report
  • [Presentation] ビタミンB6依存性セリンパルミトイル転移酵素.スフィンゴ脂質生合成系の律速酵素の反応制御機構.2011

    • Author(s)
      生城浩子
    • Organizer
      日本ビタミン学会第63回大会
    • Place of Presentation
      安田女子大学(広島県広島市)
    • Year and Date
      2011-06-05
    • Related Report
      2011 Final Research Report
  • [Presentation] ビタミンB6依存性セリンパルミトイル転移酵素-スフィンゴ脂質生合成系の律速酵素の反応制御機構-2011

    • Author(s)
      生城浩子
    • Organizer
      日本ビタミン学会第63回大会
    • Place of Presentation
      広島県広島市安田女子大学(シンポジウム招待講演)
    • Year and Date
      2011-06-05
    • Related Report
      2011 Annual Research Report
  • [Presentation] Structural Insights into the Enzymatic Mechanism of Serine Palmitoyltransferase from Sphingobacterium multivorum2010

    • Author(s)
      生城浩子
    • Organizer
      第33回日本分子生物学会年会第83回日本生化学会大会・合同大会, JB論文賞受賞ポスター発表
    • Place of Presentation
      神戸国際会議場(兵庫県神戸市)
    • Year and Date
      2010-12-09
    • Related Report
      2011 Final Research Report
  • [Presentation] Structural Insights into the Enzymatic Mechanism of Serine Palmitoyltransferase form Sphingobacterium multivorum2010

    • Author(s)
      生城浩子
    • Organizer
      第33回日本分子生物学会年会第83回日本生化学会大会合同大会
    • Place of Presentation
      兵庫県神戸市神戸国際会議場(ポスター発表(JB論文賞招待発表))
    • Year and Date
      2010-12-09
    • Related Report
      2010 Annual Research Report
  • [Presentation] 細菌におけるputativeスフィンゴシン1-リン酸リアーゼ遺伝子産物の酵素化学解析2010

    • Author(s)
      生城浩子
    • Organizer
      第52回日本脂質生化学会
    • Place of Presentation
      伊香保会館,森秋旅館(群馬県渋川市)
    • Year and Date
      2010-06-14
    • Related Report
      2011 Final Research Report
  • [Presentation] 細菌におけるputativeスフィンゴシン1-リン酸リアーゼ遺伝子産物の酵素化学解析2010

    • Author(s)
      生城浩子
    • Organizer
      第52回日本脂質生化学会
    • Place of Presentation
      群馬県渋川市伊香保会館,森秋旅館(口頭発表)
    • Year and Date
      2010-06-14
    • Related Report
      2010 Annual Research Report
  • [Presentation] 高度好熱菌由来セリンヒドロキシルメチル転移酵素のX線構造解析2010

    • Author(s)
      宮原郁子
    • Organizer
      日本ビタミン学会第62回大会
    • Place of Presentation
      アイーナ岩手県民情報交流センター(岩手県盛岡市)
    • Year and Date
      2010-06-12
    • Related Report
      2011 Final Research Report
  • [Presentation] 高度好熱菌由来セリンヒドロキシルメチル転移酵素のX線構造解析2010

    • Author(s)
      宮原郁子
    • Organizer
      日本ビタミン学会第62回大会
    • Place of Presentation
      岩手県盛岡市,アイーナ岩手県民情報交流センター(口頭発表)
    • Year and Date
      2010-06-12
    • Related Report
      2010 Annual Research Report
  • [Presentation] Stereochemical reaction mechanism of serine palmitoyltransferase. Multifunctional role of the His residue for the SPT catalysis.2010

    • Author(s)
      生城浩子
    • Organizer
      Gordon Research Cofference(Glycolipid & Sphingolipid Biology)
    • Place of Presentation
      アメリカ合衆国,カリフォルニア州,ベンチュラ
    • Year and Date
      2010-02-08
    • Related Report
      2011 Final Research Report
  • [Presentation] Stereochemical reaction mechanism of serine palmitoyltransferase -Multifunctional role of the His residue for the SPT catalysis-2010

    • Author(s)
      生城浩子
    • Organizer
      Gordon Research Cofference(Glycolipid& Sphingolipid Biology)
    • Place of Presentation
      アメリカ合衆国, カリフォルニア州, ベンチュラ
    • Year and Date
      2010-02-08
    • Related Report
      2009 Annual Research Report
  • [Presentation] セリンパルミトイル転移酵素の反応制御機構-変異酵素の副反応から明らかになった立体化学的反応制御-,シンポジウム発表2009

    • Author(s)
      生城浩子
    • Organizer
      第82回日本生化学会大会
    • Place of Presentation
      神戸国際会議場(兵庫県神戸市)
    • Year and Date
      2009-10-21
    • Related Report
      2011 Final Research Report
  • [Presentation] セリンパルミトイル転移酵素の反応制御機構-変異酵素の副反応から明らかになった立体化学的反応制御-2009

    • Author(s)
      生城浩子
    • Organizer
      第82回日本生化学会大会シンポジウム
    • Place of Presentation
      兵庫県神戸市神戸国際会議場
    • Year and Date
      2009-10-21
    • Related Report
      2009 Annual Research Report
  • [Presentation] セリンパルミトイル転移酵素変異体の解析から明らかになったHis159の多機能的役割2009

    • Author(s)
      生城浩子
    • Organizer
      第51回日本脂質生化学会
    • Place of Presentation
      ウィルあいち(愛知県名古屋市)
    • Year and Date
      2009-07-30
    • Related Report
      2011 Final Research Report
  • [Presentation] セリンパルミトイル転移酵素変異体の解析から明らかになったHis159の多機能的役割2009

    • Author(s)
      生城浩子
    • Organizer
      第51回日本脂質生化学会
    • Place of Presentation
      愛知県 名古屋市ウィルあいち(口頭発表)
    • Year and Date
      2009-07-30
    • Related Report
      2009 Annual Research Report
  • [Presentation] セリンパルミトイル転移酵素変異体の解析から明らかになったHis159の多機能的役割2009

    • Author(s)
      生城浩子
    • Organizer
      日本ビタミン学会第61回大会
    • Place of Presentation
      京都学園大学(京都府亀岡市)
    • Year and Date
      2009-05-30
    • Related Report
      2011 Final Research Report
  • [Presentation] セリンパルミトイル転移酵素変異体の解析から明らかになったHis159の多機能的役割2009

    • Author(s)
      生城浩子
    • Organizer
      日本ビタミン学会第61回大会
    • Place of Presentation
      京都府 亀岡市 京都学園大学(口頭発表)
    • Year and Date
      2009-05-30
    • Related Report
      2009 Annual Research Report
  • [Book] ビタミン総合事典2011

    • Author(s)
      生城浩子, 林秀行
    • Publisher
      朝倉書店
    • Related Report
      2011 Final Research Report
  • [Book] ビタミン総合事典2011

    • Author(s)
      林秀行, 生城浩子
    • Publisher
      朝倉書店
    • Related Report
      2011 Final Research Report
  • [Book] ビタミン総合事典(II.水溶性ビタミン3.ビタミンB6)2011

    • Author(s)
      日本ビタミン学会編集(生城浩子分担執筆)
    • Total Pages
      624
    • Publisher
      朝倉書店
    • Related Report
      2011 Annual Research Report
  • [Remarks]

    • URL

      http://www.osaka-med.ac.jp/deps/med/index.htm

    • Related Report
      2011 Final Research Report
  • [Remarks]

    • URL

      http://www.osaka-med.ac.jp/deps/med/index.htm

    • Related Report
      2010 Annual Research Report
  • [Remarks]

    • URL

      http://www.osaka-med.ac.jp/deps/med/index.htm

    • Related Report
      2009 Annual Research Report

URL: 

Published: 2009-04-01   Modified: 2016-04-21  

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi