• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to previous page

Elucidation of the denatured structure of protein in equilibrium with the native one under a physiological condition.

Research Project

Project/Area Number 21570173
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Biophysics
Research InstitutionKwansei Gakuin University

Principal Investigator

SEGAWA Shin-ichi  関西学院大学, 理工学部, 教授 (70103132)

Co-Investigator(Kenkyū-buntansha) NODA Yasuo  関西学院大学, 理工学部, 教育技術主事 (40268511)
YUTANI Katsuhide  独立行政法人理化学研究所, 理化学研究所播磨研究所, 上級研究員 (90089889)
Co-Investigator(Renkei-kenkyūsha) SUGIMOTO Hayuki  関西学院大学, 理工学研究科, 博士研究員 (60529527)
Project Period (FY) 2009 – 2011
Project Status Completed (Fiscal Year 2011)
Budget Amount *help
¥4,810,000 (Direct Cost: ¥3,700,000、Indirect Cost: ¥1,110,000)
Fiscal Year 2011: ¥910,000 (Direct Cost: ¥700,000、Indirect Cost: ¥210,000)
Fiscal Year 2010: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2009: ¥2,600,000 (Direct Cost: ¥2,000,000、Indirect Cost: ¥600,000)
Keywordsタンパク質のフォールディング / H/D交換反応とNMR測定 / リゾチームS-S結合欠損変異体 / 超好熱菌由来のタンパク質 / ピロリドンカルボキシルペプチダーゼ / タンパク質の変性状態 / グリセロールによる選択的水和 / タンパク質フォールディング / 超好熱菌由来タンパク質 / H / D交換反応とNMR測定
Research Abstract

We have studied partially ordered structures remaining in unstructured disulfide-deficient variants of lysozyme by means of NMR and H/D exchange methods. In this residual structure, two residues of I55 and L56 involved in the bottom of the α-sheet were located in a hydrophobic pocket formed with A, B and C-helices in the β-domain. Lysozyme folding appears to be initiated around this site. On the other hand, H/D exchange reactions were studied in the native state of pyrrolidone carboxyl peptidase(PCP). The native structure was found to be divided into two domains by structural changes near at the residue 70.

Report

(4 results)
  • 2011 Annual Research Report   Final Research Report ( PDF )
  • 2010 Annual Research Report
  • 2009 Annual Research Report
  • Research Products

    (30 results)

All 2012 2011 2010 2009 Other

All Journal Article (9 results) (of which Peer Reviewed: 9 results) Presentation (20 results) Remarks (1 results)

  • [Journal Article] Glycerol-Enhanced Detection of a Preferential Structure Latent in Unstructured 1SS-Variants of Lysozyme2012

    • Author(s)
      Noda, Y., Narama, K., Kasai, K., Tachibana, H. & Segawa, S.
    • Journal Title

      Biopolymers

      Volume: 97 Pages: 539-549

    • Related Report
      2011 Annual Research Report 2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Modulation of Structure and Dynamics by Disulfide Bond Formation in Unfolded States2012

    • Author(s)
      Silvers, R., Sziegat, F., Tachibana, H., Segawa, S., Whittaker, S., Gunther, U. L., Gabel, F., Huang, J., Blackledge, M., Wirmer-Bartoschek, J., Schwalbe, H.
    • Journal Title

      J. Am. Chem. Soc

      Volume: 134 Pages: 6846-6854

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] NMR and CD analysis of an intermediate state in the thermal unfolding process of mouse lipocalin-type prostaglandin D synthase2012

    • Author(s)
      Miyamoto, Y., Noda, Y., Iida, T., Yamaguchi, K., Nishimura, S., Tanaka, A., Segawa, S. & Inui, T.
    • Journal Title

      J. Biochem

      Volume: 151 Pages: 335-342

    • NAID

      10031166072

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] NMR and CD analysis of an intermediate state in the thermal unfolding process of mouse lipocalin-type prostaglandin D synthase2012

    • Author(s)
      Miyamoto, Y., Noda, Y., Iida, T., Yamaguchi, K., Nishimura, S., Tanaka, A., Segawa, S., Inui, T.
    • Journal Title

      The Journal of Biochemistry

      Volume: 151 Issue: 3 Pages: 335-342

    • DOI

      10.1093/jb/mvr140

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Modulation of Structure and Dynamics by Disulfide Bond Formation in Unfolded States2012

    • Author(s)
      Segawa, S., Silvers, R.
    • Journal Title

      J.Am.Chem.Soc.

      Volume: 134 Issue: 15 Pages: 6846-6854

    • DOI

      10.1021/ja3009506

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] NMR Analysis of a Kinetically Trapped Intermediate of a Disulfide-Deficient Mutant of the Starch-Binding Domain of Glucoamylase2011

    • Author(s)
      Sugimoto, H., Noda, Y. & Segawa, S.
    • Journal Title

      J. Mol. Biol

      Volume: 412 Pages: 304-315

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] NMR analysis of a Kinetically Trapped Intermediate of a Disulfide-Deficient Mutant of the Starch-Binding Domain of Glucoamylase2011

    • Author(s)
      Segawa, S., Sugimoto, H.
    • Journal Title

      J.Mol.Biol.

      Volume: 412 Issue: 2 Pages: 304-315

    • DOI

      10.1016/j.jmb.2011.07.025

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Glycerol-Induced Folding of Unstructured Disulfide-Deficient Lysozyme into a Native-Like Conformation2009

    • Author(s)
      Sakamoto, K., Hirai, K., Kitamura, Y., Yamazaki, K., Yusa, M., Tokunaga, N., Doi, G., Noda, Y., Tachibana, H. & Segawa, S.
    • Journal Title

      Biopolymers

      Volume: 91 Pages: 665-675

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Glycerol-Induced Folding of Unstructured Disulfide-Deficient Lysozyme into a Native-Like Conformation2009

    • Author(s)
      Sakamoto, K.
    • Journal Title

      Biopolymers 91

      Pages: 665-675

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Presentation] ピロリドンカルボキシルペプチダーゼの折りたたみ-天然類似の反応中間体の検出2012

    • Author(s)
      キンマン・クリストファー、飯村哲史、野田康夫、油谷克英、瀬川新一
    • Organizer
      日本物理学会第67回年次大会
    • Place of Presentation
      関西学院大学、西宮
    • Year and Date
      2012-03-25
    • Related Report
      2011 Final Research Report
  • [Presentation] ピロリドンカルボキシルペプチダーゼの天然立体構造の大規模な揺らぎをH/D交換反応で検出する2012

    • Author(s)
      薮本和義、飯村哲史、野田康夫、油谷克英、瀬川新一
    • Organizer
      日本物理学会第67回年次大会
    • Place of Presentation
      関西学院大学、西宮
    • Year and Date
      2012-03-25
    • Related Report
      2011 Final Research Report
  • [Presentation] ピロリドンカルボキシルペプチダーゼの折りたたみ-天然類似の反応中間体の検出2012

    • Author(s)
      キンマン・クリストファー
    • Organizer
      日本物理学会第67回年次大会
    • Place of Presentation
      関西学院大学西宮上ケ原キャンパス、兵庫県
    • Year and Date
      2012-03-25
    • Related Report
      2011 Annual Research Report
  • [Presentation] ピロリドンカルボキシルペプチダーゼの天然立体構造の大規模な揺らぎをH/D交換反応で検出する2012

    • Author(s)
      薮本和義
    • Organizer
      日本物理学会第67回年次大会
    • Place of Presentation
      関西学院大学西宮上ケ原キャンパス、兵庫県
    • Year and Date
      2012-03-25
    • Related Report
      2011 Annual Research Report
  • [Presentation] S-S結合欠損リゾチームを用いた折りたたみ反応研究の総括-折りたたみ反応における各S-S結合の役割2011

    • Author(s)
      瀬川新一、奈良間邦成、野田康夫、橘秀樹
    • Organizer
      第11回日本蛋白質科学会年会
    • Place of Presentation
      ホテル阪急エキスポパーク、大阪
    • Year and Date
      2011-06-09
    • Related Report
      2011 Final Research Report
  • [Presentation] S-S結合欠損リゾチームを用いた折りたたみ反応研究の総括-折りたたみ反応における各S-S結合の役割2011

    • Author(s)
      瀬川新一
    • Organizer
      第11回日本蛋白質科学会
    • Place of Presentation
      ホテル阪急エキスポパーク、大阪府
    • Year and Date
      2011-06-09
    • Related Report
      2011 Annual Research Report
  • [Presentation] ピロリドンカルボキシルペプチダーゼ(PCP)の天然構造の揺らぎと折りたたみ反応過程の構造との関連2011

    • Author(s)
      薮本和義
    • Organizer
      第11回日本蛋白質科学会
    • Place of Presentation
      ホテル阪急エキスポパーク、大阪府
    • Year and Date
      2011-06-08
    • Related Report
      2011 Annual Research Report
  • [Presentation] Glycerol-induced folding in four species of 1SS-variants of lysozyme-the potential folded structure remaining in unstructured proteins.2010

    • Author(s)
      Narama, K.
    • Organizer
      第48回日本生物物理学会
    • Place of Presentation
      東北大学、川内キャンパス
    • Year and Date
      2010-09-21
    • Related Report
      2010 Annual Research Report
  • [Presentation] Structural stability of each domain appearing in the early stage of PCP folding monitored by amide H/D exchange rates.2010

    • Author(s)
      Yabumoto, K.
    • Organizer
      第48回日本生物物理学会
    • Place of Presentation
      東北大学、川内キャンパス
    • Year and Date
      2010-09-20
    • Related Report
      2010 Annual Research Report
  • [Presentation] NMR Analysis of a Kinetically Trapped Refolding Intermediate of a Disulfide-Deficient Mutant of the Starch-Binding Domain of Glucoamylase2010

    • Author(s)
      Sugimoto, H., Noda, Y. & Segawa, S.
    • Organizer
      24^<th> Annual Symposium of The Protein Society
    • Place of Presentation
      San Diego, CA, USA
    • Year and Date
      2010-08-04
    • Related Report
      2011 Final Research Report
  • [Presentation] NMR Analysis of a Kinetically Trapped Refolding Intermediate of a Disulfide-Deficient Mutant of the Starch-Binding Domain of Glucoamylase.2010

    • Author(s)
      Sugimoto, H.
    • Organizer
      24^<th> Annual Symposium of The Protein Society
    • Place of Presentation
      San Diego, CA, USA.
    • Year and Date
      2010-08-04
    • Related Report
      2010 Annual Research Report
  • [Presentation] ジスルフィド結合を欠損させたデンプン結合ドメインのリフォールディング中間体のNMR解析2010

    • Author(s)
      杉本華幸、野田康夫、瀬川新一
    • Organizer
      第10回日本蛋白質科学会年会
    • Place of Presentation
      札幌コンベンションセンター
    • Year and Date
      2010-06-17
    • Related Report
      2011 Final Research Report 2010 Annual Research Report
  • [Presentation] H/D交換NMR測定法によるピロリドンカルボキシルペプチダーゼ(PCP)の折りたたみ反応における逐次構造変化の研究2010

    • Author(s)
      キンマンクリストファー、薮本和義、横田洋平、野田康夫、油谷克英、瀬川新一
    • Organizer
      第10回日本蛋白質科学会年会
    • Place of Presentation
      札幌コンベンションセンター
    • Year and Date
      2010-06-16
    • Related Report
      2011 Final Research Report 2010 Annual Research Report
  • [Presentation] NMR分光法を用いたジスルフィド結合を欠損させたデンプン結合ドメインのリフォールディング中間体の構造解析2010

    • Author(s)
      杉本華幸
    • Organizer
      日本農芸化学会2010年度大会
    • Place of Presentation
      東京大学駒場キャンパス
    • Year and Date
      2010-03-29
    • Related Report
      2009 Annual Research Report
  • [Presentation] Residual Nonrandom Structures in Disulfide-Deficient Variants of Lysozyme2009

    • Author(s)
      Kasai, K.
    • Organizer
      第47回日本生物物理学会
    • Place of Presentation
      アスティとくしま
    • Year and Date
      2009-10-30
    • Related Report
      2009 Annual Research Report
  • [Presentation] Sequential folding pathway of PCP(pyrrolidone carboxyl peptidase)in the molten-globule-like stage and its refolding to the native state.2009

    • Author(s)
      Yokota, Y.
    • Organizer
      第47回日本生物物理学会
    • Place of Presentation
      アスティとくしま
    • Year and Date
      2009-10-30
    • Related Report
      2009 Annual Research Report
  • [Presentation] NMR analysis of a kinetically trapped refolding intermediate of a disulfide-deficient mutant of the starch-binding domain of glucoamylase2009

    • Author(s)
      杉本華幸、野田康夫、瀬川新一
    • Organizer
      第82回日本生化学会
    • Place of Presentation
      神戸ポートアイランド
    • Year and Date
      2009-10-22
    • Related Report
      2011 Final Research Report 2009 Annual Research Report
  • [Presentation] NMR analysis of intermediate in thermal unfolding process of mouse lipocalin-type prostaglandin D synthase2009

    • Author(s)
      Miyamoto, Y.
    • Organizer
      第82回日本生化学会
    • Place of Presentation
      神戸ポートアイランド
    • Year and Date
      2009-10-22
    • Related Report
      2009 Annual Research Report
  • [Presentation] The folding of PCP(Pyrrolidone Carboxyl Peptidase) proceeds in the denatured state similar to the stage of molten globule2009

    • Author(s)
      Segawa, S., Yokota, Y., Dosei, M., Noda, Y. & Yutani, K.
    • Organizer
      The 23^<rd> Symposium of The Protein Society
    • Place of Presentation
      Boston, U. S. A.
    • Year and Date
      2009-07-25
    • Related Report
      2011 Final Research Report
  • [Presentation] The folding of PCP(Pyrrolidone Carboxyl Peptidase)proceeds in the denatured state similar to the stage of molten globule2009

    • Author(s)
      Segawa, S.
    • Organizer
      The 23rd Symposium of The Protein Society
    • Place of Presentation
      Boston, MA, U.S.A.
    • Year and Date
      2009-07-25
    • Related Report
      2009 Annual Research Report
  • [Remarks]

    • Related Report
      2011 Final Research Report

URL: 

Published: 2009-04-01   Modified: 2016-04-21  

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi