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Investigation of mechanism of epithelial invagination using the 3D cell model

Research Project

Project/Area Number 21570234
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Developmental biology
Research InstitutionHyogo University
Kobe University

Principal Investigator

HONDA Hisao  神戸大学, 医学研究科, 学術推進研究員 (10289118)

Project Period (FY) 2009-04-01 – 2014-03-31
Project Status Completed (Fiscal Year 2013)
Budget Amount *help
¥3,900,000 (Direct Cost: ¥3,000,000、Indirect Cost: ¥900,000)
Fiscal Year 2012: ¥780,000 (Direct Cost: ¥600,000、Indirect Cost: ¥180,000)
Fiscal Year 2011: ¥910,000 (Direct Cost: ¥700,000、Indirect Cost: ¥210,000)
Fiscal Year 2010: ¥910,000 (Direct Cost: ¥700,000、Indirect Cost: ¥210,000)
Fiscal Year 2009: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Keywordsinvagination / cell model / vertex dynamics / morphogenesis / 形態形成 / コンピュータシミュレーション / 細胞モデル / 上皮陥入 / 気管 / 神経管 / チューブ / コンピュータ・シミュレーション / 3次元細胞モデル / 細胞・組織 / 発生・分化
Research Abstract

The process of morphogenesis of multi-cellular organisms can be expressed as "Genes-Cells-Shape". To elucidate the detailed process based on actual substances, I studied a latter half of the process from Cells to Shape using a mathematical cell model. A computer simulation was performed of an epithelial invagination of the trachea formation of Drosophila, referring to actual observations. The simulation of the invagination was succeeded based several assumptions of cell behaviors. However, one of the assumptions, cell migration toward the embryo inside is arguable. On the other hand, I studied a polygonal cellular pattern of invagination in the neural tube formation. Here, anisotropic localization of the planar cell polarity gene, celsr was elucidated to cause anisotropic localization of myosin molecules that generates morphogenetic force. Then, one of the routes from genes to shape was established.

Report

(5 results)
  • 2013 Final Research Report ( PDF )
  • 2012 Annual Research Report
  • 2011 Annual Research Report
  • 2010 Annual Research Report
  • 2009 Annual Research Report
  • Research Products

    (47 results)

All 2014 2013 2012 2011 2010 2009 Other

All Journal Article (7 results) (of which Peer Reviewed: 6 results) Presentation (35 results) (of which Invited: 3 results) Book (5 results)

  • [Journal Article] Essence of Shape Formation of Animals2012

    • Author(s)
      H. Honda
    • Journal Title

      Forma

      Volume: 27

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Planar cell polarity links axes of spatial dynamics in neuraltube closure.2012

    • Author(s)
      Nishimura, T.
    • Journal Title

      Cell

      Volume: 149 Issue: 5 Pages: 1084-1097

    • DOI

      10.1016/j.cell.2012.04.021

    • Related Report
      2013 Final Research Report 2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 多細胞体形態形成のための細胞モデル2011

    • Author(s)
      本多久夫
    • Journal Title

      理論生物学(望月敦史編)(共立出版)

      Volume: 第4章第2節 Pages: 220-247

    • Related Report
      2010 Annual Research Report
  • [Journal Article] Computer simulation of wound closure in epithelial tissues : Cell basal-lamina adhesion2009

    • Author(s)
      T. Nagai and H. Honda
    • Journal Title

      Phys.Rev.E

      Volume: 80 (6), 061903 Pages: 12-12

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Computer simulation of wound closure in epithelial tissues : Cell basal-lamina a dhesion.2009

    • Author(s)
      T.Nagai, H.Honda
    • Journal Title

      Phys.Rev.E 80巻

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] ミクロとマクロをつなぐ多面体細胞モデル2009

    • Author(s)
      本多久夫
    • Journal Title

      シリーズ数理生物学要論(共立出版) 2巻

      Pages: 151-166

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 形態形成-細胞が行う自己組織化2009

    • Author(s)
      本多久夫
    • Journal Title

      自己組織化ハンドブック(NTS) 1巻

      Pages: 313-319

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Presentation] Morphogenesis by Successive Self-Construction of Cells2014

    • Author(s)
      H. Honda
    • Organizer
      BIT's 4th Annual World - Congress of Molecular and Cell Biology
    • Place of Presentation
      DICC (Dailian International Congress Cener, Dalian, China)
    • Year and Date
      2014-04-26
    • Related Report
      2013 Final Research Report
  • [Presentation] Biological cell models based on Voronoi tessellation are antecedents of modern vertex cell models2013

    • Author(s)
      H. Honda
    • Organizer
      Fifth International Conference on Analytic Number Theory and Spatial Tessellatios (Voronoi Conference)
    • Place of Presentation
      Institute of Physics and Mathematics of the Natioanl Pedagogical Dragomanov University, Kyiv, Ukraine
    • Year and Date
      2013-09-17
    • Related Report
      2013 Final Research Report
  • [Presentation] Morphogenesis by successive self-constructions of cells2013

    • Author(s)
      H. Honda
    • Organizer
      ISIS Congress-Festival Symmetry : Art and Science"Labyrinth and Symmetry"
    • Place of Presentation
      Imperial Belvedere Hotel, Hersonissos, Crete
    • Year and Date
      2013-09-14
    • Related Report
      2013 Final Research Report
  • [Presentation] Three-dimensional cell model for tissue morphogenesis2013

    • Author(s)
      H. Honda
    • Organizer
      Workshop "Computational modeling of regenerative medicine and cellular patern formation", 35th Annual International Conference of the IEEE Engineering in Medicin and Biology Society (EMSC)
    • Place of Presentation
      International Convention Center in Osaka
    • Year and Date
      2013-07-03
    • Related Report
      2013 Final Research Report
  • [Presentation] Three-dimensional cell model for tissue morphogenesis2012

    • Author(s)
      H. Honda
    • Organizer
      Banff Workshop"Tissue Growth and Morphogenesis : from Genetics to Mechanics and Back"
    • Place of Presentation
      Banff, Canada
    • Year and Date
      2012-07-25
    • Related Report
      2013 Final Research Report
  • [Presentation] 袋構造からみた哺乳類の形態形成2012

    • Author(s)
      本多久夫
    • Organizer
      第52回日本先天異常学会学術集会イフニンクセミナー
    • Place of Presentation
      日東京女子医科大学
    • Year and Date
      2012-07-07
    • Related Report
      2013 Final Research Report
  • [Presentation] メビウスの輪をもつ上皮シート2011

    • Author(s)
      本多久夫
    • Organizer
      第72回形の科学シンポジウム
    • Place of Presentation
      鹿児島大学
    • Year and Date
      2011-12-10
    • Related Report
      2013 Final Research Report 2011 Annual Research Report
  • [Presentation] Three-dimensional cell model for tissue morphogenesis2011

    • Author(s)
      H. Honda
    • Organizer
      The 49^<th> Annual Meeting of the Biophysical Society of Japan
    • Place of Presentation
      県立兵庫大学、姫路
    • Year and Date
      2011-09-16
    • Related Report
      2013 Final Research Report 2011 Annual Research Report
  • [Presentation] Three-dimensional cell model for tissue morphogenesis2011

    • Author(s)
      H. Honda
    • Organizer
      The 2011 Meeting on"Computational Cell Biology"
    • Place of Presentation
      Cold Spring Harbor Lab., New York,USA
    • Year and Date
      2011-03-30
    • Related Report
      2013 Final Research Report
  • [Presentation] Three dimensional cell model for tissue morphogenesis2011

    • Author(s)
      H. Honda and T. Nagai
    • Organizer
      17^<th> International Biophysics Congress
    • Place of Presentation
      China National Convention Center、北京
    • Related Report
      2013 Final Research Report
  • [Presentation] Three-dimensional cell model for tissue morphogenesis2011

    • Author(s)
      H.Honda
    • Organizer
      Cold Spring Harbor Lab The 2011 Meeting on "Computational Cell Biology
    • Place of Presentation
      Cold Spring Harbor Lab., New York
    • Related Report
      2011 Annual Research Report
  • [Presentation] Three-dimensional cell model for tissue morphogenesis2011

    • Author(s)
      H.Honda, T.Nagai
    • Organizer
      17^<th> International Biophysics Congress
    • Place of Presentation
      China National Convention Center、北京
    • Related Report
      2011 Annual Research Report
  • [Presentation] 細い毛細血管の周長はとびとびの値をもつ?2010

    • Author(s)
      本多久夫
    • Organizer
      第70回形の科学シンポジウム
    • Place of Presentation
      加古川市
    • Year and Date
      2010-11-21
    • Related Report
      2013 Final Research Report 2010 Annual Research Report
  • [Presentation] Mechanical cell properties causing epithelial invagination2010

    • Author(s)
      H. Honda, M. Nishimura, T. Kondo, S. Hayahi
    • Organizer
      日本生物物理学会第48回年会
    • Place of Presentation
      東北大学川内キャンパス
    • Year and Date
      2010-09-21
    • Related Report
      2013 Final Research Report
  • [Presentation] 上皮シートの陥入をおこす細胞のふるまい2010

    • Author(s)
      本多久夫、西村真由子、近藤武史、林茂生
    • Organizer
      第20回日本数理生物学会大会
    • Place of Presentation
      北海道大学
    • Year and Date
      2010-09-14
    • Related Report
      2013 Final Research Report 2010 Annual Research Report
  • [Presentation] An equation of motion for cell-based morphogenesis2010

    • Author(s)
      H. Honda
    • Organizer
      Symposium 10. 43^<rd> Annual Meeting for the Japanese Society of Developmental Biologists
    • Place of Presentation
      Kyoto
    • Year and Date
      2010-06-23
    • Related Report
      2013 Final Research Report
  • [Presentation] Balance of planar and apicaco-basal forces orchestrate the invagination fo the Drosophila tracheal placode2010

    • Author(s)
      T. Kondo, M. Nishimura, H. Honda, S. Hayahi
    • Organizer
      43rd Annual Meeting for the Japanese Society of Developmental Biologists
    • Place of Presentation
      Kyoto
    • Related Report
      2013 Final Research Report
  • [Presentation] 上皮シートの陥入をおこす細胞のふるまい2009

    • Author(s)
      本多久夫、西村真由子、近藤武史、林茂生
    • Organizer
      第68回形の科学シンポジウム
    • Place of Presentation
      獨協医大
    • Year and Date
      2009-11-22
    • Related Report
      2013 Final Research Report
  • [Presentation] 上皮シートの陥入をおこす細胞のふるまい2009

    • Author(s)
      本多久夫、長井達三、和田宝成、加藤輝、林茂生
    • Organizer
      第68回形の科学シンポジウム
    • Place of Presentation
      獨協医大学・宇都宮市
    • Year and Date
      2009-11-22
    • Related Report
      2009 Annual Research Report
  • [Presentation] 形態形成研究のための3次元細胞モデル2009

    • Author(s)
      本多久夫
    • Organizer
      第31回日本バイオマテリアル学会シンポジウム5
    • Place of Presentation
      京都テルサ
    • Year and Date
      2009-11-17
    • Related Report
      2013 Final Research Report
  • [Presentation] 形態形成研究のための3次元細胞モデル2009

    • Author(s)
      本多久夫
    • Organizer
      第31回日本バイオマテリアル学会(招待講演)
    • Place of Presentation
      京都府民総合交流プラザ・京都市
    • Year and Date
      2009-11-17
    • Related Report
      2009 Annual Research Report
  • [Presentation] 一周一細胞の上皮性チューブの形成2009

    • Author(s)
      本多久夫、長井達三、和田宝成、加藤輝、林茂生
    • Organizer
      日本生物物理学会第47回年会
    • Place of Presentation
      アスティとくしま
    • Year and Date
      2009-11-01
    • Related Report
      2013 Final Research Report
  • [Presentation] Symmetry breakage in the early mammalian embryo2009

    • Author(s)
      H. Honda
    • Organizer
      International Interdisciplinary Conference of ISIS-Symmetry
    • Place of Presentation
      Wroclaw and Cracow, Poland
    • Year and Date
      2009-09-14
    • Related Report
      2013 Final Research Report
  • [Presentation] Symmetry breakage in the early mammalian embryo.2009

    • Author(s)
      H.Honda
    • Organizer
      International Interdisciplinary Conference of ISIS "Symmetry of forms and structures
    • Place of Presentation
      Wroclaw, Poland
    • Year and Date
      2009-09-14
    • Related Report
      2009 Annual Research Report
  • [Presentation] Formation of an epithelial tube of single cell-size circumference2009

    • Author(s)
      H. Honda, T.Nagai, H.Wada, K.Kato, S.Hayahi
    • Organizer
      42nd Annual Meeting for the Japanese Society of Developmental Biologists
    • Place of Presentation
      Niigata
    • Year and Date
      2009-05-30
    • Related Report
      2013 Final Research Report
  • [Presentation] Coordination of cell movement by microtubule and myosin systems during epithelial invagination2009

    • Author(s)
      M.Nishimura, H. Honda, S.Hayahi
    • Organizer
      42nd Annual Meeting for the Japanese Society of Developmental Biologists
    • Place of Presentation
      Niigata
    • Year and Date
      2009-05-30
    • Related Report
      2013 Final Research Report
  • [Presentation] Coordination of cell movement by microtubule and myosin systems during epithelial invagination.2009

    • Author(s)
      M.Nishimura, H.Honda, S.Hayahi
    • Organizer
      42^<nd> Ann.Meeting J.Soc.Developmental Biologists
    • Place of Presentation
      新潟市
    • Year and Date
      2009-05-30
    • Related Report
      2009 Annual Research Report
  • [Presentation] Formation of an epithelial tube of single cell-size circumference2009

    • Author(s)
      H.Honda, T.Nagai, H.Wada, K.Kato, S.Hayahi
    • Organizer
      42^<nd> Ann.Meeting J.Soc.Developmental Biologists
    • Place of Presentation
      新潟市
    • Year and Date
      2009-05-30
    • Related Report
      2009 Annual Research Report
  • [Presentation] 袋構造からみた哺乳類の形態形成

    • Author(s)
      本多久夫
    • Organizer
      第52回日本先天異常学会学術集会イブニングセミナー
    • Place of Presentation
      東京女子医科大学
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] 細胞モデル

    • Author(s)
      本多久夫
    • Organizer
      第22回日本数理生物学会大会 コメンテーター
    • Place of Presentation
      岡山大学
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] Three-dimensional cell model for tissue morphogenesis

    • Author(s)
      H. Honda
    • Organizer
      Banff Workshop “Tissue Growth and Morphogenesis: from Genetics to Mechanics and Back”
    • Place of Presentation
      Banff, Canada
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] Balance of planar and apico-basal forces orchestrate the invagination of the Drosophila tracheal placode

    • Author(s)
      T.Kondo, M.Nishimura, H.Honda, S.Hayahi
    • Organizer
      43rd Annual Meeting for the Japanese Society of Developmental Biologists
    • Place of Presentation
      京都市
    • Related Report
      2010 Annual Research Report
  • [Presentation] An equation of motion for cell-based morphogenesis

    • Author(s)
      H.Honda
    • Organizer
      Symposium "After Turing : Towards novel mathematical modeling of biological forms" in 43rd Annual Meeting for the Japanese Society of Developmental Biologists
    • Place of Presentation
      京都市
    • Related Report
      2010 Annual Research Report
  • [Presentation] Mechanical cell properties causing epithelial invagination

    • Author(s)
      H.Honda, M.Nishimura, T.Kondo, S.Hayahi
    • Organizer
      日本生物物理学会第48回年会
    • Place of Presentation
      東北大学川内キャンパス
    • Related Report
      2010 Annual Research Report
  • [Presentation] Three-dimensional cell model for tissue morphogenesis

    • Author(s)
      H.Honda
    • Organizer
      The 2011 Meeting on "Computational Cell Biology"
    • Place of Presentation
      Cold Spring Harbor Lab.ニューヨーク州
    • Related Report
      2010 Annual Research Report
  • [Book] 「多細胞体形態形成のための細胞モデル」望月敦史編『生命科学の新しい潮流−理論生物学』第4章第2節2011

    • Author(s)
      本多久夫
    • Publisher
      共立出版
    • Related Report
      2013 Final Research Report
  • [Book] 『形の生物学』NHKブックス2010

    • Author(s)
      本多久夫
    • Publisher
      NHK出版
    • Related Report
      2013 Final Research Report
  • [Book] 形の生物学2010

    • Author(s)
      本多久夫
    • Total Pages
      372
    • Publisher
      NHKブックス、NHK出版
    • Related Report
      2010 Annual Research Report
  • [Book] 「形態形成−細胞が行う自己組織化」国武豊喜監修『自己組織化ハンドブック』第1章第9節2009

    • Author(s)
      本多久夫
    • Publisher
      株/NTS
    • Related Report
      2013 Final Research Report
  • [Book] 「ミクロとマクロをつなぐ多面体細胞モデル(第9章)「シリーズ数理生物学要論」(日本数理生物学会編集)第2巻「『空間』の数理生物学」(瀬野裕美編)2009

    • Author(s)
      本多久夫
    • Publisher
      共立出版
    • Related Report
      2013 Final Research Report

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Published: 2009-04-01   Modified: 2019-07-29  

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