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Study on molecular co-evolution of enzyme and substrate

Research Project

Project/Area Number 21570240
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Evolutionary biology
Research InstitutionSophia University

Principal Investigator

YASUMASU Shigeki  上智大学, 理工学部, 教授 (00222357)

Co-Investigator(Renkei-kenkyūsha) NISIDA Mutumi  東京大学, 海洋研究所, 教授 (90136896)
NAGATA Koji  東京大学, 大学院・農学生命科学研究科, 准教授 (30280788)
Project Period (FY) 2009 – 2011
Project Status Completed (Fiscal Year 2011)
Budget Amount *help
¥4,940,000 (Direct Cost: ¥3,800,000、Indirect Cost: ¥1,140,000)
Fiscal Year 2011: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2010: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2009: ¥2,080,000 (Direct Cost: ¥1,600,000、Indirect Cost: ¥480,000)
Keywords機能進化 / 共進化 / 孵化酵素 / 遺伝子重複 / 卵膜 / 硬骨魚類 / 卵膜タンパク質 / 卵膜分解機構 / 新規機能遺伝子 / 遺伝子 / 進化 / 酵素
Research Abstract

In previous phylogenetic analysis, we suggested that fishes included in Elopomorpha, as basal teleosts, possess a single type of hatching enzyme genes, and that fishes in Otocephala and Euteleostei gain two types of hatching enzyme genes called clade I and II genes by duplication. The Elopomorph hatching enzyme and the clade I enzyme swell the egg envelope by cleaving the N-terminal regions of ZP proteins, while the clade II enzyme solubilizes the swollen envelope by cleaving the two specific sites at N-terminal of ZP domain and the middle region on the ZP domain. In the evolutionary scenario, our findings support that the clade I enzymes inherit the ancestral enzyme function, and the clade II enzymes gain a new function during evolution to Otocephala and Euteleostei. Our study also suggested that a change in the egg envelope protein during evolution strongly contributed to the acquisition of a new function of euteleostean clade II enzyme.

Report

(4 results)
  • 2011 Annual Research Report   Final Research Report ( PDF )
  • 2010 Annual Research Report
  • 2009 Annual Research Report
  • Research Products

    (36 results)

All 2012 2011 2010 2009

All Journal Article (15 results) (of which Peer Reviewed: 15 results) Presentation (20 results) Book (1 results)

  • [Journal Article] Remarkable consistency of exon-intron structure of hatching enzyme genes and molecular phylogenetic relationships of teleostean fishes2012

    • Author(s)
      Mari Kawaguchi, Sebastien Lavoue, Junya Hiroi, Hirofumi Hayano, Ichiro Iuchi, Shigeki Yasumasu, Mutsumi Nishida
    • Journal Title

      Environmental Biology of Fishes

      Volume: (in press) Issue: 3 Pages: 567-576

    • DOI

      10.1007/s10641-011-9920-1

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Hatching enzyme of Japanese eel Anguilla japonica and the possible evolution of the egg envelope digestion mechanism2011

    • Author(s)
      Sano K, Kawaguchi M, Yoshikawa M, Kaneko T, Tanaka T, Iuchi I and Yasumasu S
    • Journal Title

      FEBS J

      Volume: 278 Issue: 19 Pages: 3711-3723

    • DOI

      10.1111/j.1742-4658.2011.08289.x

    • Related Report
      2011 Annual Research Report 2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Conservation of the egg envelope digestion mechanism of hatching enzyme in euteleostean fishes2010

    • Author(s)
      Kawaguchi M, Yasumasu S, Shimizu A, Sano K, Iuchi I, Nishida M
    • Journal Title

      FEBS J

      Volume: 277 Pages: 4973-4987

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Evolution of the teleostean zona pellucida gene inferred from the egg envelope protein genes of the Japanese eel, Anguilla japonica2010

    • Author(s)
      Sano K, Kawaguchi M, Yoshikawa M, Iuchi I, Yasumasu S
    • Journal Title

      FEBS J

      Volume: 277 Pages: 4674-4684

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Intronloss evolution of hatching enzyme gene in Teleostei2010

    • Author(s)
      Kawaguchi M, Hiroi J, Miya M, Nishida M, Iuchi I, Yasumasu S
    • Journal Title

      BMC Evol Biol

      Volume: 27 10 Pages: 260-260

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Crystal structure of zebrafish hatching enzyme 1 from the zebrafish Danio rerio2010

    • Author(s)
      Okada A, Sano K, Nagata K, Yasumasu S, Ohtsuka J, Yamamura A, Kubota K, Iuchi I, Tanokura M
    • Journal Title

      J Mol Biol

      Volume: 8(402) Pages: 865-878

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Mechanism of egg envelope digestion by hatching enzymes2010

    • Author(s)
      Yasumasu S, Kawaguchi M, Ouchi S, Sano K, Murata K, Sugiyama H, Akema T, Iuchi I
    • Journal Title

      HCE and LCE in medaka, Oryzias latipes

      Volume: 148 Pages: 439-448

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Conservation of the egg envelope digestion mechanism of hatching enzyme in euteleostean fishes.2010

    • Author(s)
      Kawaguchi M, Yasumasu S, Shimizu A, Sano K, Iuchi I, Nishida M.
    • Journal Title

      FEBS J.

      Volume: 277 Pages: 4973-4987

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Evolution of the teleostean zona pellucida gene inferred from the egg envelope protein genes of the Japanese eel, Anguilla japonica.2010

    • Author(s)
      Sano K, Kawaguchi M, Yoshikawa M, Iuchi I, Yasumasu S.
    • Journal Title

      FEBS J.

      Volume: 277 Pages: 4674-4684

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Intron-loss evolution of hatching enzyme genes in Teleostei.2010

    • Author(s)
      Kawaguchi M, Hiroi J, Miya M, Nishida M, Iuchi I, Yasumasu S.
    • Journal Title

      BMC Evol Biol.

      Volume: 27

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Crystal structure of zebrafish hatching enzyme 1 from the zebrafish Danio rerio.2010

    • Author(s)
      Okada A, Sano K, Nagata K, Yasumasu S, Ohtsuka J, Yamamura A, Kubota K, Iuchi I, Tanokura M.
    • Journal Title

      J Mol Biol.

      Volume: 8;402 Pages: 865-878

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Mechanism of egg envelope digestion by hatching enzymes, HCE and LCE in medaka, Oryzias latipes.2010

    • Author(s)
      Yasumasu S, Kawaguchi M, Ouchi S, Sano K, Murata K, Sugiyama H, Akema T, Iuchi I.
    • Journal Title

      J Biochem.

      Volume: 148 Pages: 439-448

    • NAID

      10027878821

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Hatching mechanism of the Chinese soft-shelled turtle Pelodiscus sinensis2010

    • Author(s)
      Yasumasu S, Uzawa M, Iwasawa A, Yoshizaki N.
    • Journal Title

      Comp Biochem Physiol B Biochem Mol Biol. 155

      Pages: 435-441

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Crystallization and preliminary X-ray analysis of ZHE1, a hatching enzyme from the zebrafish Danio rerio2009

    • Author(s)
      Okada A, Nagata K, Sano K, Yasumasu S, Kubota K, Ohtsuka J, Iuchi I, Tanokura M.
    • Journal Title

      Acta Crystallogr Sect F Struct Biol Cryst Commun. 1;65

      Pages: 1018-1020

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A possible role of chorion protease in shell membrane degradation during development of quail embryos2009

    • Author(s)
      Iwasawa A, Mao KM, Yasumasu S, Yoshizaki N
    • Journal Title

      Poultry Science 88

      Pages: 2636-2643

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Presentation] ニシン・骨鰾類の2種の孵化酵素の孵化酵素と卵膜の分子共進化卵膜分解機構2011

    • Author(s)
      佐野香織・川口眞理・井内一郎・安増茂樹
    • Organizer
      第82回日本動物学会
    • Place of Presentation
      旭川市大雪クリスタルホール
    • Year and Date
      2011-09-22
    • Related Report
      2011 Final Research Report
  • [Presentation] ニシン・骨鰾類の2種の孵化酵素の卵膜分解機構2011

    • Author(s)
      佐野香織・川口眞理・井内一郎・安増茂樹
    • Organizer
      第82回日本動物学会
    • Place of Presentation
      旭川市大雪クリスタルホール
    • Year and Date
      2011-09-22
    • Related Report
      2011 Annual Research Report
  • [Presentation] 孵化酵素の環境適応~1つのアミノ酸変異による至適塩濃度の違い~2011

    • Author(s)
      川口眞理・井内一郎・西田睦・安増茂樹
    • Organizer
      第82回日本動物学会
    • Place of Presentation
      旭川市大雪クリスタルホール
    • Year and Date
      2011-09-21
    • Related Report
      2011 Annual Research Report
  • [Presentation] 孵化酵素と卵膜の分子共進化2011

    • Author(s)
      川口眞理・西田睦・安増茂樹
    • Organizer
      第13回日本進化学会
    • Place of Presentation
      京都大学
    • Year and Date
      2011-07-30
    • Related Report
      2011 Annual Research Report 2011 Final Research Report
  • [Presentation] タンパク質機能の進化:魚類孵化酵素による卵膜分解メカニズム2011

    • Author(s)
      佐野香織・川口眞理・安増茂樹
    • Organizer
      13回日本進化学会
    • Place of Presentation
      京都大学
    • Year and Date
      2011-07-30
    • Related Report
      2011 Final Research Report
  • [Presentation] タンパク質機能の進化:魚類孵化酵素による卵膜分解メカニズム2011

    • Author(s)
      佐野香織・川口眞理・安増茂樹
    • Organizer
      第13回日本進化学会
    • Place of Presentation
      京都大学
    • Year and Date
      2011-07-30
    • Related Report
      2011 Annual Research Report
  • [Presentation] Evolution of protein function : the mechanism of egg envelope digestion by fish hatching enzymes as a model2011

    • Author(s)
      Kaori Sano, Mari Kawaguchi, and Shigeki Yasumasu
    • Organizer
      Annual Conference of Society for Molecular Biology and Evolution
    • Place of Presentation
      京都大学
    • Year and Date
      2011-07-27
    • Related Report
      2011 Annual Research Report 2011 Final Research Report
  • [Presentation] Molecular co-evolution of protease and proteinaceous substrate : hatching enzyme and egg envelope protein as a model system2011

    • Author(s)
      Mari Kawaguchi, Mutsumi Nishida, Shigeki Yasumasu
    • Organizer
      Annual Conference of Society for Molecular Biology and Evolution
    • Place of Presentation
      京都大学
    • Year and Date
      2011-07-27
    • Related Report
      2011 Annual Research Report
  • [Presentation] アユ孵化酵素遺伝子群のゲノム構造の探査2011

    • Author(s)
      野村健太郎・川口眞理・竹花佑介・成瀬清・安増茂樹
    • Organizer
      第64回日本動物学会関東支部大会
    • Place of Presentation
      東邦大学習志野キャンパス
    • Year and Date
      2011-03-17
    • Related Report
      2011 Annual Research Report 2011 Final Research Report
  • [Presentation] ハタハタ孵化酵素遺伝子のクローン化と発現局在2011

    • Author(s)
      松山葵、川口眞理、安増茂樹
    • Organizer
      日本動物学会関東支部会
    • Place of Presentation
      慶応大学(地震のためインターネット公開)
    • Related Report
      2010 Annual Research Report
  • [Presentation] 孵化酵素と卵膜の分子共進化:Fundulusとメダカ間における種特異的な卵膜分解2010

    • Author(s)
      川口眞理・安増茂樹・西田睦
    • Organizer
      日本進化学会第12回東京大会
    • Place of Presentation
      東京工業大学大岡山キャンパス
    • Related Report
      2010 Annual Research Report
  • [Presentation] 2種の孵化酵素をもつミルクフィッシュChanos chanosの卵膜分解機構とその進化2010

    • Author(s)
      佐野香織、川口眞理、渡部諭史、井内一郎、安増茂樹
    • Organizer
      日本進化学会第12回東京大会
    • Place of Presentation
      東京工業大学大岡山キャンパス
    • Related Report
      2010 Annual Research Report
  • [Presentation] Fundulusとメダカ間の種特異的な卵膜分解からわかった孵化酵素と卵膜の分子共進化2010

    • Author(s)
      川口眞理、安増茂樹、井内一郎、西田睦
    • Organizer
      日本動物学会第81回東京大会
    • Place of Presentation
      東京大学駒場キャンパス
    • Related Report
      2010 Annual Research Report
  • [Presentation] ミルクフィッシュの2種の孵化酵素による卵膜分解機構2010

    • Author(s)
      佐野香織、川口眞理、渡部諭史、井内一郎、安増茂樹
    • Organizer
      日本動物学会第81回東京大会
    • Place of Presentation
      東京大学駒場キャンパス
    • Related Report
      2010 Annual Research Report
  • [Presentation] Species specificity of egg envelope digestion by hatching enzymes of sticklebacks Gasterosteus aculeatus and Pungitius sinensis : a molecular aspect of coevolution of protease and proteinous substrate2009

    • Author(s)
      Mari Kawaguchi, Shigeki Yasumasu, Hiroshi Takahashi, Ichiro Iuchi, Mutsumi Nishida
    • Organizer
      International Conference on Stickleback Behaviour and Evolution
    • Place of Presentation
      Leicester, United Kingdom
    • Year and Date
      2009-07-14
    • Related Report
      2009 Annual Research Report
  • [Presentation] Phylogeny-dependent intron-loss evolution of hatching enzyme genes in Teleostei2009

    • Author(s)
      Mari Kawaguchi, Shigeki Yasumasu, Junya Hiroi, Ichiro Tuchi, Masaki Miya, Mutsumi Nishida
    • Organizer
      14th Evolutionary Biology Meeting
    • Place of Presentation
      Marseilles, France
    • Related Report
      2009 Annual Research Report
  • [Presentation] Hatching enzyme of ovoviviparous black rockfish Sebastes schlegelii : environmental adaptation of hatching enzyme and evolutionary aspects of formation of pseudogene2009

    • Author(s)
      Shigeki Yasumasu, Mari Kawaguchi, Junya Hiroi, Ichiro Iuchi
    • Organizer
      14th Evolutionary Biology Meeting
    • Place of Presentation
      Marseilles, France
    • Related Report
      2009 Annual Research Report
  • [Presentation] Evolution of the mechanism of egg envelope digestion by fish hatching enzyme2009

    • Author(s)
      Sano Kaori, Mari Kawaguchi, Ichiro Iuchi, Shigeki Yasumasu
    • Organizer
      14th Evolutionary Biology Meeting
    • Place of Presentation
      Marseilles, France
    • Related Report
      2009 Annual Research Report
  • [Presentation] 硬骨魚類卵膜構成タンパク質の合成場所の起源2009

    • Author(s)
      佐野香織, 川口真理, 井内一郎, 安増茂樹
    • Organizer
      日本動物学会第80回静岡大会
    • Place of Presentation
      静岡
    • Related Report
      2009 Annual Research Report
  • [Presentation] 孵化酵素と卵膜の分子共進化:Fundulus とメダカ間における種特異的卵膜分解機構2009

    • Author(s)
      川口眞理, 安増茂樹, 清水昭男, 井内一郎, 西田睦
    • Organizer
      日本動物学会第80回静岡大会
    • Place of Presentation
      静岡
    • Related Report
      2009 Annual Research Report
  • [Book] Molecular evolution of teleostean hatching enzymes and their egg envelope digestion mechanism : an aspect of co-evolution of protease and substrate. In Medaka : A Model for Organogenesis, Human Disease and Evolution2011

    • Author(s)
      Yasumasu S, Sano K, Kawaguchi M
    • Publisher
      Springer
    • Related Report
      2011 Final Research Report

URL: 

Published: 2009-04-01   Modified: 2016-04-21  

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