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Genomic analysis of the S-locus region and identification of the S determinant in wild barley, Hordeum bulbosum

Research Project

Project/Area Number 21580006
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Breeding science
Research InstitutionMie University

Principal Investigator

KAKEDA Katsuyuki  三重大学, 大学院・生物資源学研究科, 教授 (50221867)

Co-Investigator(Renkei-kenkyūsha) KOMATSUDA Takao  独立行政法人農業生物資源研究所, 基盤研究領域植物ゲノム研究ユニット, 上級研究員 (60370657)
Project Period (FY) 2009 – 2011
Project Status Completed (Fiscal Year 2011)
Budget Amount *help
¥4,940,000 (Direct Cost: ¥3,800,000、Indirect Cost: ¥1,140,000)
Fiscal Year 2011: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Fiscal Year 2010: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Fiscal Year 2009: ¥2,600,000 (Direct Cost: ¥2,000,000、Indirect Cost: ¥600,000)
Keywords自家不和合性 / イネ科 / S遺伝子 / ゲノム解析 / 自家不和合成
Research Abstract

Hordeum bulbosum, a wild species of barley, possesses self-incompatibility(SI) controlled by unlinked two loci, S and Z. To search for a new candidate gene encoding the pollen S determinant, we conducted sequence analysis of the genomic region around the HPS10 gene, a promising candidate of the pistil S gene. DNA sequences of genomic clone contigs obtained from S1 and S3 haplotypes(50kb and 67kb, respectively) were completely determined and then subjected for prediction of genes and expression analysis. The results showed the presence of polymorphic genomic regions around HPS10 gene between two S haplotypes, where several genes expressed in reproductive tissues were detected. Furthermore, proteome analysis of the pollen proteins combined with the above-mentioned sequence data newly identified putative pollen proteins that may function as a recognition molecule of the SI.

Report

(4 results)
  • 2011 Annual Research Report   Final Research Report ( PDF )
  • 2010 Annual Research Report
  • 2009 Annual Research Report
  • Research Products

    (22 results)

All 2012 2011 2010 2009

All Journal Article (7 results) (of which Peer Reviewed: 7 results) Presentation (15 results)

  • [Journal Article] Expression and functional analysis of the barley Nud gene using transgenic rice2011

    • Author(s)
      K. Kakeda, N. Ishihara, Y. Izumi, K. Sato, S. Taketa
    • Journal Title

      Breeding Science

      Volume: 61 Pages: 35-42

    • Related Report
      2011 Final Research Report 2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Deletion mutations of the self-incompatibility(S) locus induced by gamma irradiation in a wild diploid species of sweet potato2010

    • Author(s)
      K. Kakeda, M. Tsutsumi, Y. Kowyama
    • Journal Title

      Ipomoea trifida、JARQ

      Volume: 44 Pages: 127-131

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Deletion mutations of the self-incompatibility (S) locus induced by gamma irradiation in a wild diploid species of sweet potato, Ipomoea trifida2010

    • Author(s)
      K.Kakeda
    • Journal Title

      Jpn.Agr.Res.Qtr.(JARQ)

      Volume: 44 Pages: 127-131

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Molecular phylogeny of the genus Hordeum using thioredoxin-like gene sequences2009

    • Author(s)
      K. Kakeda, S. Taketa, T. Komatsuda
    • Journal Title

      Breeding Science

      Volume: 59 Pages: 595-601

    • NAID

      10025925016

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Slocus-linked F-box genes expressed in anthers of Hordeum bulbosum2009

    • Author(s)
      K. Kakeda
    • Journal Title

      Plant Cell Reports

      Volume: 28 Pages: 1453-1460

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] S locus-linked F-box genes expressed in anthers of Hordeum bulbosum2009

    • Author(s)
      K.Kakeda
    • Journal Title

      Plant Cell Reports 28

      Pages: 1453-1460

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Molecular phylogeny of the genus Hordeum using thioredoxin-like gene sequences2009

    • Author(s)
      K.Kakeda
    • Journal Title

      Breeding Science 59

      Pages: 595-601

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Presentation] BSMV-VIGSによるオオムギNud遺伝子の発現抑制と皮裸性の変化2012

    • Author(s)
      掛田克行
    • Organizer
      日本育種学会第121回講演会
    • Place of Presentation
      宇都宮市
    • Year and Date
      2012-03-30
    • Related Report
      2011 Final Research Report
  • [Presentation] オオムギ野生種における雌蕊側S因子候補HPS10のin vitro花粉発芽阻害効果の検定2011

    • Author(s)
      橋本翔
    • Organizer
      育種学会中部地区談話会第19回講演会
    • Place of Presentation
      津市
    • Year and Date
      2011-12-10
    • Related Report
      2011 Annual Research Report 2011 Final Research Report
  • [Presentation] BSMV-VIGSによるオオムギNud遺伝子の発現抑制と皮裸性の変化2011

    • Author(s)
      掛田克行
    • Organizer
      日本育種学会第121回講演会
    • Place of Presentation
      福井市
    • Year and Date
      2011-09-24
    • Related Report
      2011 Annual Research Report
  • [Presentation] イネ科植物の受粉過程における二遺伝子座自家不和合性システム2010

    • Author(s)
      掛田克行
    • Organizer
      日本分子生物学会第33回年会
    • Place of Presentation
      神戸市
    • Year and Date
      2010-12-07
    • Related Report
      2011 Final Research Report 2010 Annual Research Report
  • [Presentation] オオムギ属野生種におけるCly1ホモログの解析2010

    • Author(s)
      掛田克行
    • Organizer
      日本育種学会第118回講演会
    • Place of Presentation
      秋田市
    • Year and Date
      2010-09-25
    • Related Report
      2011 Final Research Report 2010 Annual Research Report
  • [Presentation] Molecular and genomic analysis of the S locus region in wild barley, Hordeum bulbosum2010

    • Author(s)
      K. Kakeda
    • Organizer
      11th International Congress on Sexual Plant Reproduction
    • Place of Presentation
      Bristol(UK)
    • Year and Date
      2010-08-05
    • Related Report
      2011 Final Research Report
  • [Presentation] Molecular and genomic analysis of the S locus region in wild barley, Hordeum bulbosum2010

    • Author(s)
      K.Kakeda
    • Organizer
      11th International Congress on Sexual Plant Reproduction
    • Place of Presentation
      Bristol (U.K.)
    • Year and Date
      2010-08-05
    • Related Report
      2010 Annual Research Report
  • [Presentation] Two-locus allorecognition system in the self-incompatibility of wild barley, Hordeum bulbosum2010

    • Author(s)
      K. Kakeda
    • Organizer
      International Symposium Intercellular recognition and allogeneric authentication
    • Place of Presentation
      Nagoya
    • Year and Date
      2010-01-14
    • Related Report
      2011 Final Research Report 2009 Annual Research Report
  • [Presentation] オオムギ皮裸性遺伝子(Nud)を導入した形質転換イネの組織化学的解析2009

    • Author(s)
      石原倫光
    • Organizer
      育種学会中部地区談話会第17回講演会
    • Place of Presentation
      静岡市
    • Year and Date
      2009-12-05
    • Related Report
      2011 Final Research Report
  • [Presentation] オオムギ皮裸性遺伝子(Nud)のを導入した形質転換イネの組織化学的解析2009

    • Author(s)
      石原倫光
    • Organizer
      育種学会中部地区談話会第17回講演会
    • Place of Presentation
      静岡
    • Year and Date
      2009-12-05
    • Related Report
      2009 Annual Research Report
  • [Presentation] Comparative analysis of the S locus region in wild barley, Hordeum bulbosum2009

    • Author(s)
      K. Kakeda
    • Organizer
      9th International Plant Molecular Biology Congress
    • Place of Presentation
      St. Louis(USA)
    • Year and Date
      2009-10-28
    • Related Report
      2011 Final Research Report
  • [Presentation] Comparative analysis of the S locus region in wild barley, Hordeum bulbosunz2009

    • Author(s)
      K.Kakeda
    • Organizer
      9th International Plant Molecular Biology Congress
    • Place of Presentation
      St. Louis (USA)
    • Year and Date
      2009-10-28
    • Related Report
      2009 Annual Research Report
  • [Presentation] オオムギ属における穎花の開閉性に関する種間変異2009

    • Author(s)
      石原倫光
    • Organizer
      日本育種学会第116回講演会
    • Place of Presentation
      札幌市
    • Year and Date
      2009-09-25
    • Related Report
      2011 Final Research Report
  • [Presentation] オオムギ属における穎花の開閉性に関する種間変異2009

    • Author(s)
      石原倫光
    • Organizer
      日本育種学会第116回講演会
    • Place of Presentation
      札幌
    • Year and Date
      2009-09-25
    • Related Report
      2009 Annual Research Report
  • [Presentation] Molecular phylogeny of the genus Hordeum using thioredoxin-like gene sequences2009

    • Author(s)
      K. Kakeda
    • Organizer
      6th International Triticeae Symposium
    • Place of Presentation
      Kyoto
    • Year and Date
      2009-06-01
    • Related Report
      2011 Final Research Report 2009 Annual Research Report

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Published: 2009-04-01   Modified: 2016-04-21  

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