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Development of thermostable protein-refolding catalysis and characterization of the kinetic properties

Research Project

Project/Area Number 21580112
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Applied biochemistry
Research InstitutionOkayama University

Principal Investigator

TAMURA Takashi  岡山大学, 大学院・自然科学研究科, 准教授 (40253009)

Co-Investigator(Renkei-kenkyūsha) KURAMITSU Seiki  大阪大学, 大学院・理学部研究科, 教授 (60153368)
Project Period (FY) 2009 – 2011
Project Status Completed (Fiscal Year 2011)
Budget Amount *help
¥4,810,000 (Direct Cost: ¥3,700,000、Indirect Cost: ¥1,110,000)
Fiscal Year 2011: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2010: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
Fiscal Year 2009: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Keywords酵素化学 / ジスルフィド架橋 / 蛋白質フォールディング / 酸化還元電位 / 平衡論支配 / 速度論支配 / シグナルペプチド配列 / ペリプラズム空間 / ジスルフィドイソメラーゼ / ジスルフイド架橋 / ジスルフィト架橋 / シグナルペブチド配列 / ペリープラズム空間
Research Abstract

The present study assessed the contribution of sctive site sequence of Escherichia coli DsbA by screening a library of mutant dsbA genes with the genetically randomized active-site sequence CXXC. Alleles of 24 dsbA mutants gave significant variation in the cellular functions, and a mutant dsbA gene that encodes Cys-Asp-Ile-Cys sequence enhanced pahge sensitivity by 40-fold more than the wild-type dsbA. The redox potential of DsbA[CDIC] was determined to be. 171. 8 mV, which suggested less oxidizing catalyst than the wild type DsbA(-125. 9 mV) and the redox potential was close to that of yeast protein disulfide isomerase(175 mV). It was suggested that DsbA[CDIC] improved the net yield of the correctly folded periplasmic proteins through the disulfide isomerase catalysis. Thermostable homologs were also characterized for application of folding catalysis at high temperature.

Report

(4 results)
  • 2011 Annual Research Report   Final Research Report ( PDF )
  • 2010 Annual Research Report
  • 2009 Annual Research Report
  • Research Products

    (41 results)

All 2012 2011 2010 2009 Other

All Journal Article (24 results) (of which Peer Reviewed: 19 results) Presentation (10 results) Book (2 results) Remarks (4 results) Patent(Industrial Property Rights) (1 results)

  • [Journal Article] Selenite reduction by thioredoxin system : kinetics and identification of protein-bound selenide2011

    • Author(s)
      T. Tamura, K. Sato, T. Okugochi, K. Komori, T. Imai, M. Kuwahara, H. Mihara, N. Esaki, and K. Inagaki
    • Journal Title

      Biosci. Biotech. Biochem

      Volume: 75 Pages: 1184-1187

    • NAID

      10029328515

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Identification and conformer analysis of a novel redox-active motif, Pro-Ala-Ser-Cys-Cys-Ser, in Drosophila thioredoxin reductase by semiempirical molecular orbital calculation2011

    • Author(s)
      M. Kuwahra, T. Tamura, K. Kawamura, K. Inagaki
    • Journal Title

      Biosci. Biotech. Biochem

      Volume: 75 Pages: 516-521

    • NAID

      10028201773

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Arg305 of Streptomyces L-glutamate oxidase plays a crucial role for substrate recognition2011

    • Author(s)
      T. Utsumi, J. Arima, C. Sakaguchi, T. Tamura, C. Sasaki, H. Kusakabe, S. Sugio, K. Inagaki
    • Journal Title

      Biochem. Biophys. Res. Commun

      Volume: 417 Pages: 951-955

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Selenite reduction by the thioredoxin system : kinetic and identification of protein-bound selenite2011

    • Author(s)
      T.Tamura, K.Sato, K.Komori, T.Imai, M.Kuwahara, T.Okugochi, H.Mihara, N.Esaki, K.Inagaki
    • Journal Title

      Biosci.Biotechnol.Biochem.

      Volume: 75(6) Pages: 1184-1187

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Identification and conformer analysis of a novel redox-active motif, Pro-Ala-Ser-Cys-Cys-Ser, in Drosophila thiredoxin reductase by semiempirical molecular orbital calculation2011

    • Author(s)
      M.Kuwahara, T.Tamura, K.Kawamura, K.Inagaki
    • Journal Title

      Biosci.Biotechnol.Biochem.

      Volume: 75(3) Pages: 516-521

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Arg305 of Streptomyces L-glutamate oxidase plays a crucial role for substrate recognition2011

    • Author(s)
      T.Utsumi, J.Arima, C.Sakaguchi, T.Tamura, C.Sasaki, H.Kusakabe, S.Sugio, K.Inagakai
    • Journal Title

      Biochem.Biophys.Res.Commun.

      Volume: 417 Pages: 951-955

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] か弱気者よ,汝の名は酵素なり2011

    • Author(s)
      田村隆
    • Journal Title

      生物工学会誌

      Volume: 89 Pages: 750-750

    • Related Report
      2011 Annual Research Report
  • [Journal Article] 水素で車が走る未来へ~新しいヒドロゲナーゼの発見~2011

    • Author(s)
      田村隆
    • Journal Title

      生物工学会誌

      Volume: 89 Pages: 81-81

    • NAID

      110008460966

    • Related Report
      2011 Annual Research Report
  • [Journal Article] ERストレスとセレンタンパク質Sep152011

    • Author(s)
      田村隆
    • Journal Title

      ビタミン

      Volume: 85 Pages: 27-27

    • NAID

      110008440795

    • Related Report
      2011 Annual Research Report
  • [Journal Article] セレン代謝の初期過程に関わる蛋白質群2011

    • Author(s)
      田村隆
    • Journal Title

      ビタミン

      Volume: 85 Pages: 346-348

    • Related Report
      2011 Annual Research Report
  • [Journal Article] Production improvement of antifungal, antitrypanosomal nucleoside sinefungin by rpoB mutation and optimization of resting cell system of Streptomyces incarnatus NRRL 80892010

    • Author(s)
      K. Fukuda, T. Tamura, H. Ito, S. Yamamoto, K. Ochi, K. Inagaki
    • Journal Title

      J. Biosci. Bioeng

      Volume: 109 Pages: 459-465

    • NAID

      110007618921

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Identification of ornithine-lactam as a biosynthetic intermediate for sinefungin biosynthesis in Streptomyces incarnatus NRRL80892010

    • Author(s)
      K. Fukuda, T. Tamura, K. Sato, K. Inagaki
    • Journal Title

      Actinomycetologica

      Volume: 24 Pages: 63-65

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Production improvement of antifungal, antitrypanosomal nucleoside sinefungin by rpoB mutation and optimization of resting cell system of Streptomyces incarnatus NRRL80892010

    • Author(s)
      K.Fukuda, T.Tamura, H.Ito, S.Yamamoto, K.Ochi, K.Inagaki
    • Journal Title

      J.Biosci.Bioeng.

      Volume: 106 Pages: 459-465

    • NAID

      110007618921

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Identification and purification of an L-alanine dehydrogenase homolog that catalyzes the formation of L-ornithine lactam from sinefungin-producing Streptomyces incarnatus NRRL80892010

    • Author(s)
      K.Fukuda, T.Tamura, Kumi Sato, K.Inagaki
    • Journal Title

      Actinomycetologica

      Volume: 24 Pages: 63-65

    • NAID

      10027123111

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 計算化学を取り入れた生体高分子の新機能解析法2010

    • Author(s)
      田村隆
    • Journal Title

      生化学

      Volume: 82 Pages: 863-867

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 含セレンタンパク質はセレン代謝のバイオマーカーになり得るか2010

    • Author(s)
      田村隆
    • Journal Title

      ビタミン

      Volume: 2 Pages: 77-79

    • NAID

      110007575042

    • Related Report
      2010 Annual Research Report
  • [Journal Article] Cuckoo fungus mimics termite eggs by producing the cellulose-digeting enzyme beta-glucosidase2009

    • Author(s)
      K. Matsuura, T. Yashiro, K. Shimizu, S. Tatsumi, and T. Tamura
    • Journal Title

      Currnt Biology

      Volume: 19 Pages: 30-36

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Structural characterization of L-glutamate oxidase from Streptomyces sp. X-119-62009

    • Author(s)
      J. Arima, C. Sasaki, C. Sakaguchi, H. Mizuno, T. Tamura, A. Kashima, H. Kusakabe, S. Sugio, and K. Inagaki
    • Journal Title

      FEBS Journal

      Volume: 276 Pages: 3894-3903

    • NAID

      110008440793

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Conflicting Two Hypotheses on Reductive Selenite Assimilation in Escharichia coli2009

    • Author(s)
      T. Tamura
    • Journal Title

      Biomed. Res. Trace Elem

      Volume: 20 Pages: 226-231

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Enhanced production of fluorinated nucleoside antibiotic nucleocidin by rifampicin-resistant mutant of Streptomyces calvus IFO132002009

    • Author(s)
      K. Fukuda, T. Tamura, Y. Segawa, Y. Mutaguchi, K. Inagaki
    • Journal Title

      Actinomycetologica

      Volume: 23 Pages: 51-55

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Cuckoo fungus mimics termite eggs by producing the cellulose-digeting enzyme beta-glucosidase2009

    • Author(s)
      K.Matsuura, T.Yashiro, K.Shimizu, S.Tatsumi, T.Tamura
    • Journal Title

      Currnt Biology 19

      Pages: 30-36

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Structural characterization of L-glutamate oxidase from Streptomyces sp. X-119-62009

    • Author(s)
      J.Arima, C.Sasaki, C.Sakaguchi, H.Mizuno, T.Tamura, A.Kashima, H.Kusakabe, S.Sugio, K.Inagaki
    • Journal Title

      FEBS Journal 276

      Pages: 3894-3903

    • NAID

      110008440793

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Conflicting Two Hypothesec on Reductive Selenite Assimilation in Escharichia coli2009

    • Author(s)
      T.Tamura
    • Journal Title

      Biomed. Res. Trace Elem. 20

      Pages: 226-231

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Enhanced production of fluorinated nucleoside antibiotic nucleocidin by rifampicin-resistant mutant of Streptomyces calvus IFO132002009

    • Author(s)
      K.Fukuda, T.Tamura, Y.Segawa, Y.Mutaguchi, K.Inagaki
    • Journal Title

      Actinomycetologica 23

      Pages: 51-55

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Presentation] ジスルフィドイソメラーゼの酸化還元電位を持つDsbAの活性測定2011

    • Author(s)
      清遠亜沙子, 田村隆, 吉田隆真, 稲垣賢二
    • Organizer
      第63回日本生物工学会大会
    • Place of Presentation
      東京
    • Year and Date
      2011-09-26
    • Related Report
      2011 Final Research Report
  • [Presentation] ジスルフィドイソメラーゼの酸化還元電位を持つDsbAの活性測定2011

    • Author(s)
      清遠亜沙子, 田村隆, 古田隆真, 稲垣賢二
    • Organizer
      第63回日本生物工学会大会
    • Place of Presentation
      東京農工大学
    • Year and Date
      2011-09-22
    • Related Report
      2011 Annual Research Report
  • [Presentation] Thermus thermophilus HB8のペリプラズムフォールディングシステムTthA0610/1422系の発現と機能解析2011

    • Author(s)
      田村隆, 古田隆真, 森祐磨, 海老原章郎, 倉光成紀, 稲垣賢二
    • Organizer
      第10回「高度好熱菌丸ごと一匹プロジェクト」
    • Place of Presentation
      理化学研究所播磨研究所
    • Year and Date
      2011-08-22
    • Related Report
      2011 Annual Research Report
  • [Presentation] Thermus thermophilus HB8のペリプラズムフォールディングシステムTthA0610/1422系の発現と機能解析2011

    • Author(s)
      田村隆, 吉田隆真, 森祐磨, 海老原章郎, 倉光成紀, 稲垣賢二
    • Organizer
      第10回「高度好熱菌丸ごと一匹プロジェクト」連携研究会
    • Place of Presentation
      理化学研究所,播磨研究所
    • Year and Date
      2011-08-20
    • Related Report
      2011 Final Research Report
  • [Presentation] ジスルフィドイソメラーゼの酸化還元電位を持つDsbA[CRIC]の発現系検討2010

    • Author(s)
      清遠亜沙子, 田村隆, 吉田隆真, 稲垣賢二
    • Organizer
      日本生物工学会
    • Place of Presentation
      宮崎
    • Year and Date
      2010-10-27
    • Related Report
      2011 Final Research Report
  • [Presentation] Combinatorial Mutation of the Active-site Dipeptide Sequence Revealed No Correlation between the Redox Potentials and Biological Functionality of DsbA[CXXC]2010

    • Author(s)
      T. Tamura, A. Kiyoto, T. Yoshida, K. Ito K. Inagaki
    • Organizer
      The 3rd International Symposium on Protein Community
    • Place of Presentation
      奈良
    • Year and Date
      2010-09-13
    • Related Report
      2011 Final Research Report
  • [Presentation] 高度好熱菌Thermus thermophilusのジスルフィド架橋形成酵素群の解析2010

    • Author(s)
      吉田隆真, 田村隆, 清遠亜沙子, 稲垣賢二
    • Organizer
      第33回日本分子生物学会年会・第83回日本生化学会大会 合同大会
    • Place of Presentation
      神戸ポートアイランド
    • Related Report
      2010 Annual Research Report
  • [Presentation] 耐熱性ジスルフィド形成蛋白質TthA0610, TthA1422の発現と機能解析2009

    • Author(s)
      吉田隆真, 田村隆, 海老原章郎, 倉光成紀, 稲垣賢二
    • Organizer
      2009年度日本農芸化学会関西・中四国・西日本支部、日本栄養・食糧学会九州・沖縄支部および日本食品科学工学会西日本支部合同大会
    • Place of Presentation
      那覇市
    • Year and Date
      2009-10-30
    • Related Report
      2011 Final Research Report
  • [Presentation] A novel active-site sequence Cys-Asp-Ile-Cys altered E. coli DsbA into a potent protein disulfide isomerase2009

    • Author(s)
      T. Tamura
    • Organizer
      The 4th International Congress on Stress Responses in Biology and Medicine
    • Place of Presentation
      札幌
    • Year and Date
      2009-10-06
    • Related Report
      2011 Final Research Report
  • [Presentation] A novel active-site sequence Cys-Asp-Ile-Cys altered E. coli DsbA into a potent protein disulfide isomerase2009

    • Author(s)
      Takashi Tamrura
    • Organizer
      国際ストレス生物医学会(CSSI2009)
    • Place of Presentation
      札幌
    • Related Report
      2009 Annual Research Report
  • [Book] 放線菌と生きる2011

    • Author(s)
      田村隆, 他
    • Publisher
      医学評論社
    • Related Report
      2011 Final Research Report
  • [Book] 放線菌と生きる2011

    • Author(s)
      田村隆(分担)
    • Publisher
      医学評論社
    • Related Report
      2011 Annual Research Report
  • [Remarks]

    • URL

      http://www.agr.okayama-u.ac.jp/ApplEnz/

    • Related Report
      2011 Final Research Report
  • [Remarks]

    • URL

      http://www.agr.okayama-u.ac.jp/ApplEnz/

    • Related Report
      2011 Annual Research Report
  • [Remarks]

    • URL

      http://www.agr.okayama-u.ac.jp/ApplEnz/

    • Related Report
      2010 Annual Research Report
  • [Remarks]

    • URL

      http://www.agr.okayama-u.ac.jp/ApplEnz/

    • Related Report
      2009 Annual Research Report
  • [Patent(Industrial Property Rights)] 変異型RNAポリメラーゼβ-サブユニット遺伝子2012

    • Inventor(s)
      田村隆
    • Industrial Property Rights Holder
      岡山大学
    • Industrial Property Number
      2012-002943
    • Filing Date
      2012-01-11
    • Related Report
      2011 Annual Research Report 2011 Final Research Report

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Published: 2009-04-01   Modified: 2016-04-21  

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