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Detection of bovine PNLIP DNA polymorphism and association study of the polymorphism with marbling trait

Research Project

Project/Area Number 21580347
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Applied animal science
Research InstitutionNiigata University

Principal Investigator

YAMADA Takahisa  新潟大学, 自然科学系, 教授 (40253207)

Project Period (FY) 2009 – 2011
Project Status Completed (Fiscal Year 2011)
Budget Amount *help
¥4,940,000 (Direct Cost: ¥3,800,000、Indirect Cost: ¥1,140,000)
Fiscal Year 2011: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2010: ¥2,470,000 (Direct Cost: ¥1,900,000、Indirect Cost: ¥570,000)
Fiscal Year 2009: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Keywords家畜ゲノム / 脂肪交雑 / 原因遺伝子 / PNLIP / DNA多型 / SNP / 相関解析 / 候補遺伝子 / 黒毛和種 / 侯補遺伝子 / EDG1 / RPL27A / プロモーター / レポーターアッセイ
Research Abstract

We showed that rs41648172、rs41648176 and rs41648178 SNPs have differences in allele frequency distribution between high-marbled and low-marbled cattle groups of Japanese Black breed, by performing detection of PNLIP polymorphism with direct-sequencing and establishment of genotyping method with PCR-RFLP. We further clarified that rs41648172 SNP is useful marker for marker-assisted selection to increase marbling level, using association study for individual SNP effect, analysis of comparison of allele frequency distribution between various cattle breeds, and association study for combined marker effect.

Report

(4 results)
  • 2011 Annual Research Report   Final Research Report ( PDF )
  • 2010 Annual Research Report
  • 2009 Annual Research Report
  • Research Products

    (33 results)

All 2012 2011 2010 2009 Other

All Journal Article (29 results) (of which Peer Reviewed: 28 results) Presentation (4 results)

  • [Journal Article] Distribution of allele frequencies at TTN g. 231054C> T, RPL27A g. 3109537C> T and AKIRIN2 c. 188G> A between Japanese Black and four other cattle breeds with differing historical selection for marbling2011

    • Author(s)
      N. Watanabe, Y. Satoh, T. Fujita, T. Ohta, H. Kose, Y. Muramatsu, T. Yamamoto, T. Yamada
    • Journal Title

      BMC Res. Notes

      Volume: 4 Pages: 10-10

    • NAID

      120006748892

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Quantitative trait gene responsible for intramuscular fat content in the rat2011

    • Author(s)
      H. Tanomura, T. Yamamoto, Y. Muramatsu, T. Ohta, T. Yamada
    • Journal Title

      J. Anim. Vet. Adv.

      Volume: 10 Pages: 841-846

    • NAID

      120006748899

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Difference in PNLIP allele frequency distribution between high-marbled and low-marbled cattle2011

    • Author(s)
      H. Tanomura, Y. Muramatsu, T. Yamamoto, T. Ohta, H. Kose, T. Yamada
    • Journal Title

      J. Anim. Vet. Adv.

      Volume: 10 Pages: 1714-1718

    • NAID

      120006748898

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] The pancreatic lipase gene is associated with marbling in Japanese Black beef cattle2011

    • Author(s)
      H. Tanomura, T. Yamamoto, Y. Muramatsu, T. Ohta, H. Kose, T. Yamada
    • Journal Title

      J. Anim. Vet. Adv.

      Volume: 10 Pages: 1719-1723

    • NAID

      120006748897

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Possible association of single nucleotide polymorphism in titin gene with growth-related trait in Japanese Black beef cattle2011

    • Author(s)
      T. Yamada, S. Sasaki, S. Sukegawa, Y. Takahagi, M. Morita, H. Murakami, F. Morimatsu, T. Fujita
    • Journal Title

      J. Anim. Vet. Adv.

      Volume: 10 Pages: 2603-2606

    • NAID

      120006748896

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Distribution of allele frequencies at TTN g.231054C>T, RPL27A g.3109537C>T and AKIRJN2 c.*188G>A between Japanese Black and four other cattle breeds with differing historical selection for marbling2011

    • Author(s)
      Watanabe N, Satoh Y, Fujita T, Ohta T, Kose H, Muramatsu Y, Yamamoto T, Yamada T
    • Journal Title

      BMC Research Notes

      Volume: 4 Issue: 1 Pages: 10-10

    • DOI

      10.1186/1756-0500-4-10

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Quantitative trait gene responsible for intramuscular fat content in the rat2011

    • Author(s)
      Tanomura H, Yamamoto T, Muramatsu Y, Ohta T, Yamada T
    • Journal Title

      Journal of Animal and Veterinary Advances

      Volume: 10 Issue: 7 Pages: 841-846

    • DOI

      10.3923/javaa.2011.841.846

    • NAID

      120006748899

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Difference in PNLIP allele frequency distribution between high-marbled and low-marbled cattle2011

    • Author(s)
      Tanomura H, Muramatsu Y, Yamamoto T Ohta T, Kose H, Yamada T
    • Journal Title

      Journal of Animal and Veterinary Advances

      Volume: 10 Issue: 13 Pages: 1714-1718

    • DOI

      10.3923/javaa.2011.1714.1718

    • NAID

      120006748898

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] The pancreatic lipase gene is associated with marbling in Japanese Blackbeef cattle2011

    • Author(s)
      Tanomura H, Yamamoto T, Muramatsu Y, Ohta T, Kose H, Yamada T
    • Journal Title

      Journal of Animal and Veterinary Advances

      Volume: 10 Issue: 13 Pages: 1719-1723

    • DOI

      10.3923/javaa.2011.1719.1723

    • NAID

      120006748897

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Possible association of single nucleotide polymorphism in titin gene with growth-related trait in Japanese Black beef cattle2011

    • Author(s)
      Yamada T, Sasaki S, Sukegawa S, Takahagi Y, Morita M, Murakami H, Morimatsu F, Fujita T
    • Journal Title

      Journal of Animal and Veterinary Advances

      Volume: 10 Issue: 19 Pages: 2603-2606

    • DOI

      10.3923/javaa.2011.2603.2606

    • NAID

      120006748896

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Replicated association of the single nucleotide polymorphism in EDG1 with marbling in three general populations of Japanese Black beef cattle2010

    • Author(s)
      S. Sukegawa, T. Miyake, Y. Takahagi, H. Murakami, F. Morimatsu, T. Yamada, Y. Sasaki
    • Journal Title

      BMC Res. Notes

      Volume: 3 Pages: 66-66

    • NAID

      120006748891

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] The T allele at the g. 1471620G> T in the EDG1 gene associated with high marbling in Japanese Black cattle is at a low frequency in breeds not selected for marbling2010

    • Author(s)
      N. Watanabe, T. Yamada, S. Yoshioka, M. Itoh, Y. Satoh, M. Furuta, S. Komatsu, Y. Sumio, T. Fujita, Y. Sasaki
    • Journal Title

      Anim. Sci. J.

      Volume: 81 Pages: 142-144

    • NAID

      10027888890

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Association study on marbling trait in Japanese Black beef cattle, based on extrapolation from rat study2010

    • Author(s)
      Y. Muramatsu, T. Yamada
    • Journal Title

      Res. Adv. Anim. Sci.

      Volume: 1 Pages: 1-8

    • Related Report
      2011 Final Research Report
  • [Journal Article] 佐賀県黒毛和種牛におけるAkirin2遺伝子の1塩基置換と枝肉形質との関連性2010

    • Author(s)
      林田瑠美子, 前田友香, 片渕直人, 大坪利豪, 山田宜永, 佐々木義之, 和田康彦
    • Journal Title

      日暖畜報

      Volume: 53 Pages: 51-56

    • NAID

      130004555622

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] The T allele at the g.1471620G>T in the EDGI gene associated with high marbling in Japanese Black cattle is at a low frequency in breeds not selected for marbling.2010

    • Author(s)
      Watanabe, et al.
    • Journal Title

      Anim.Sci.J.

      Volume: 81 Pages: 142-144

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Characteristics of proliferation and differentiation-dependent C/EBP. PPARy and leptm gene expression patterns intrinsic to bovine mtramuscular, penrenal and subcutaneous preadipocytes.2010

    • Author(s)
      Yamamoto, et al.
    • Journal Title

      J.Anim.Vet.Adv.

      Volume: 9 Pages: 1639-1645

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Replicated association of the single nucleotide polymorphism in EDG1 with marbling in three general populations of Japanese Black beef cattle.2010

    • Author(s)
      Sukegawa, et al.
    • Journal Title

      BMC Res.Notes

      Volume: 3 Pages: 66-66

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Association of a single nucleotide polymorphism in ribosomal protein L27a gene with marbling in Japanese Black beef cattle2009

    • Author(s)
      T. Yamada, S. Sasaki, S. Sukegawa, T. Miyake, T. Fujita, H. Kose, M. Morita, Y. Takahagi, H. Murakami, F. Morimatsu, Y. Sasaki
    • Journal Title

      Anim. Sci. J.

      Volume: 80 Pages: 631-635

    • NAID

      10027887826

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Association of a single nucleotide polymorphism in akirin2 gene with marbling in Japanese Black beef cattle2009

    • Author(s)
      S. Sasaki, T. Yamada, S. Sukegawa, T. Miyake, T. Fujita, M. Morita, T. Ohta, Y. Takahagi, H. Murakami, F. Morimatsu, Y. Sasaki
    • Journal Title

      BMC Res. Notes

      Volume: 2 Pages: 131-131

    • NAID

      120006748890

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Association of a single nucleotide polymorphism in titin gene with marbling in Japanese Black beef cattle2009

    • Author(s)
      T. Yamada, S. Sasaki, S. Sukegawa, S. Yoshioka, Y. Takahagi, M. Morita, H. Murakami, F. Morimatsu, T. Fujita, T. Miyake, Y. Sasaki
    • Journal Title

      BMC Res. Notes

      Volume: 2 Pages: 78-78

    • NAID

      120006748889

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Association of single nucleotide polymorphisms in the endothelial differentiation sphingolipid G-protein-coupled receptor 1 gene with marbling in Japanese Black beef cattle2009

    • Author(s)
      T. Yamada, M. Itoh, S. Nishimura, Y. Taniguchi, T. Miyake, S. Sasaki, S. Yoshioka, T. Fujita, K. Shiga, M. Morita, Y. Sasaki
    • Journal Title

      Anim. Genet.

      Volume: 40 Pages: 209-216

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Novel SNP in 5' flanking region of EDG1 associated with marbling in Japanese Black beef cattle2009

    • Author(s)
      T. Yamada, S. Sasaki, S. Sukegawa, T. Miyake, T. Fujita, H. Kose, M. Morita, Y. Takahagi, H. Murakami, F. Morimatsu, Y. Sasaki
    • Journal Title

      Anim. Sci. J.

      Volume: 80 Pages: 486-489

    • NAID

      10027887239

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] The G allele at the c.-312A> G in the EDG1 gene associated with high marbling in Japanese Black cattle is at a low frequency in breeds not selected for marbling2009

    • Author(s)
      N. Watanabe, S. Yoshioka, M. Itoh, Y. Satoh, M. Furuta, S. Komatsu, Y. Sumio, T. Fujita, T. Yamada, Y. Sasaki
    • Journal Title

      Anim. Genet.

      Volume: 40 Pages: 579-579

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] 佐賀県黒毛和種牛におけるEDG1遺伝子の1塩基置換と枝肉形質との関連性2009

    • Author(s)
      和田康彦, 林田瑠美子, 礒兼妙子, 片渕直人, 大坪利豪, 山田宜永, 佐々木義之
    • Journal Title

      日暖畜報

      Volume: 52 Pages: 37-41

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Association of single nucleotide polymorphisms in the endothelial differentiation sphingolipid G-protein-coupled receptor 1 gene with marbling in Japanese Black beef cattle.2009

    • Author(s)
      Yamada, et al.
    • Journal Title

      Animal Genetics 40

      Pages: 209-216

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Association of a single nucleotide polymorphism in titin gene with marbling in Japanese Black beef cattle.2009

    • Author(s)
      Yamada, et al.
    • Journal Title

      BMC Research Notes 2

      Pages: 78-78

    • NAID

      120006748889

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Novel SNP in 5' flanking region of EDG1 associated with marbling in Japanese Black beef cattle.2009

    • Author(s)
      Yamada, et al.
    • Journal Title

      Animal Science Journal 80

      Pages: 486-489

    • NAID

      10027887239

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Association of single nucleotide polymorphism in pancreatic lipase gene with growth-related traits in Japanese Black beef cattle

    • Author(s)
      H. Tanomura, Y. Muramatsu, T. Yamamoto, T. Ohta, H. Kose, T. Yamada
    • Journal Title

      J. Anim. Vet. Adv.

      Volume: (in press)

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Distribution of allele frequency at PNLIP rs41648172 between Japanese Black and four other cattle breeds with differing historical selection for marbling

    • Author(s)
      H. Tanomura, Y. Muramatsu, T. Yamamoto, T. Ohta, H. Kose, T. Yamada
    • Journal Title

      J. Anim. Vet. Adv.

      Volume: (in press)

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Presentation] 新潟県黒毛和種集団における脂肪交雑関連EDG1多型のアリル頻度分布2012

    • Author(s)
      福家成美,日水唯衣,山田宜永,波田野雅人,小林英和,加藤博幸
    • Organizer
      第50回北信越畜産学会新潟県分会
    • Place of Presentation
      新潟市
    • Year and Date
      2012-03-16
    • Related Report
      2011 Final Research Report
  • [Presentation] OLETFラットを用いた筋肉内脂肪蓄積に関わる遺伝子の探索:ポジショナルキャンディデートの探索2011

    • Author(s)
      田之村秀樹,山本卓司,村松陽治,山田宜永
    • Organizer
      第60回北信越畜産学会大会
    • Place of Presentation
      長野市
    • Year and Date
      2011-11-11
    • Related Report
      2011 Annual Research Report 2011 Final Research Report
  • [Presentation] OLETFを用いた筋肉内脂肪蓄積に関わる遺伝子の探索:ポジショナルキャン.ギイデートの探索2011

    • Author(s)
      田之村, ら
    • Organizer
      第50回北信越畜産学会新潟県分会
    • Place of Presentation
      新潟大学
    • Year and Date
      2011-03-17
    • Related Report
      2010 Annual Research Report
  • [Presentation] Association of single nucleotide polymorphisms in Pnlip with marbling in Japanese Black beef cattle.2009

    • Author(s)
      Muramatsu, Yamada, et al.
    • Organizer
      第32回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜
    • Year and Date
      2009-12-11
    • Related Report
      2009 Annual Research Report

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Published: 2009-04-01   Modified: 2016-04-21  

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